mRNA_P-canaliculata_contig101543.242.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101543.242.1
Unique NamemRNA_P-canaliculata_contig101543.242.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig101543.242.1 vs. uniprot
Match: A0A4P5ZB65_9BACT (Transposase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A4P5ZB65_9BACT)

HSP 1 Score: 169 bits (429), Expect = 1.770e-51
Identity = 77/142 (54.23%), Postives = 110/142 (77.46%), Query Frame = 1
Query:    1 MGSFTKLTYHVVLSTKFHQPTITEDIQQEFNEYVGGTVCGQKGNLV*ISGIEDHVHLLLNIPPTKSVSNFIRDLKSSVSKWVNDSKLIEQEFRWQNGYGAFTVSHSQVEHVQRYIQNQEEHHRKLTFKEEYVAILKRHNIQF 426
            MGSFT+LTYH+V +TK+ + TITE IQ+   EY+GGT+ G+KG+L+ I G+EDHVHLL  + P+ +VS+ IRD+K+S S W+ + + I   F WQ GYGAFTVS+ +++ +++YIQNQ+EHHR  TF+EEY+  L+RH I+F
Sbjct:    1 MGSFTRLTYHIVFATKYRKRTITEQIQERLYEYIGGTLRGKKGHLIEIGGVEDHVHLLAGLSPSLAVSDVIRDVKASSSLWMKEERQIAG-FEWQKGYGAFTVSYDRIDAIRKYIQNQKEHHRTKTFQEEYIDFLQRHGIEF 141          
BLAST of mRNA_P-canaliculata_contig101543.242.1 vs. uniprot
Match: A0A4P5YDY1_9BACT (Transposase n=1 Tax=Planctomycetia bacterium TaxID=2052181 RepID=A0A4P5YDY1_9BACT)

HSP 1 Score: 168 bits (425), Expect = 7.180e-51
Identity = 79/146 (54.11%), Postives = 110/146 (75.34%), Query Frame = 1
Query:    1 MGSFTKLTYHVVLSTKFHQPTITEDIQQEFNEYVGGTVCGQKGNLV*ISGIEDHVHLLLNIPPTKSVSNFIRDLKSSVSKWVNDSKLIEQEFRWQNGYGAFTVSHSQVEHVQRYIQNQEEHHRKLTFKEEYVAILKRHNIQFEDHY 438
            MGSFT LTYHVV +TK+ + +IT +IQ+   EY+GGT+ G+KG+L+ I GIEDHVHLL  + P  +VS+ IRD+K+S SKW+ +   ++Q F WQ GYGAFTVS+ +VE +++YI+NQ EHH+  TF+EEY+  L+RH I+F   Y
Sbjct:    1 MGSFTLLTYHVVFATKYRKRSITAEIQERLYEYMGGTLRGKKGHLIEIGGIEDHVHLLAGLSPVLAVSDVIRDVKASSSKWMREVGCVDQ-FEWQKGYGAFTVSYDRVEAIRKYIRNQVEHHKTKTFQEEYIDFLQRHGIEFRTEY 145          
BLAST of mRNA_P-canaliculata_contig101543.242.1 vs. uniprot
Match: A0A5C6ALG4_9BACT (Transposase IS200 like protein n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C6ALG4_9BACT)

HSP 1 Score: 167 bits (422), Expect = 2.120e-50
Identity = 78/143 (54.55%), Postives = 107/143 (74.83%), Query Frame = 1
Query:    1 MGSFTKLTYHVVLSTKFHQPTITEDIQQEFNEYVGGTVCGQKGNLV*ISGIEDHVHLLLNIPPTKSVSNFIRDLKSSVSKWVNDSKLIEQEFRWQNGYGAFTVSHSQVEHVQRYIQNQEEHHRKLTFKEEYVAILKRHNIQFE 429
            M SFTKLTYH V STK+ +P I + +++   EY+GG V  + G L+ I GIEDH+HLLL++  T++VSN IRD+K++ S+WVN+   I++ F WQ GY AFTVS+ Q+  V+RYI NQ +HHRKLTF EEY + LKRH+I+F+
Sbjct:    1 MSSFTKLTYHAVWSTKYRKPIIVDSLRERLYEYIGGIVRQKDGVLLEIGGIEDHIHLLLHVSATQTVSNAIRDIKANASRWVNELPEIKRRFEWQKGYSAFTVSYPQLPKVRRYIINQRKHHRKLTFAEEYRSFLKRHDIEFD 143          
BLAST of mRNA_P-canaliculata_contig101543.242.1 vs. uniprot
Match: A0A3E0Q938_9BACT (IS200/IS605 family transposase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0Q938_9BACT)

HSP 1 Score: 167 bits (422), Expect = 2.120e-50
Identity = 70/143 (48.95%), Postives = 105/143 (73.43%), Query Frame = 1
Query:    1 MGSFTKLTYHVVLSTKFHQPTITEDIQQEFNEYVGGTVCGQKGNLV*ISGIEDHVHLLLNIPPTKSVSNFIRDLKSSVSKWVNDSKLIEQEFRWQNGYGAFTVSHSQVEHVQRYIQNQEEHHRKLTFKEEYVAILKRHNIQFE 429
            MG++TKLTYHV+  TK  +P+I E +++   EY+GGT+    G+L+ I G+EDH+H+L N+ P ++VS+ IRD+K++ S+W+N    ++ +F WQ GY  FTVSHS V  VQ YIQ Q +HHR  TF+EEY+A L+RH+++F+
Sbjct:    1 MGAYTKLTYHVIFGTKHRRPSIREQLRERLYEYIGGTIRELNGHLIQIGGVEDHLHILTNLTPARAVSDMIRDVKANASRWMNQLPQVKSQFEWQKGYAEFTVSHSNVPSVQAYIQKQRQHHRTTTFEEEYIAFLRRHDVEFK 143          
BLAST of mRNA_P-canaliculata_contig101543.242.1 vs. uniprot
Match: M5RL54_9BACT (Transposase IS200-family protein n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5RL54_9BACT)

HSP 1 Score: 165 bits (417), Expect = 1.220e-49
Identity = 71/146 (48.63%), Postives = 111/146 (76.03%), Query Frame = 1
Query:    1 MGSFTKLTYHVVLSTKFHQPTITEDIQQEFNEYVGGTVCGQKGNLV*ISGIEDHVHLLLNIPPTKSVSNFIRDLKSSVSKWVNDSKLIEQEFRWQNGYGAFTVSHSQVEHVQRYIQNQEEHHRKLTFKEEYVAILKRHNIQFEDHY 438
            MGS+T+LTYHVV +TK+  P+I  +I+++  E++GG + G+KG L+ I G+ DHVH+L  +  T +V++ IRD+K++ S+W+++   +++ F WQ GYGAFTVS+S++  V+ YIQNQE HHR++TF++EY+  LKRH+IQF   Y
Sbjct:    1 MGSYTQLTYHVVYATKYRDPSIIAEIREKLYEFIGGIIRGKKGRLIEIGGVADHVHILAQLSATLAVADVIRDVKANSSRWMHEQTAVKRTFEWQKGYGAFTVSYSRIPKVRSYIQNQETHHRRVTFQDEYINFLKRHDIQFRLEY 146          
BLAST of mRNA_P-canaliculata_contig101543.242.1 vs. uniprot
Match: A0A5C6CC69_9BACT (Transposase IS200 like protein n=1 Tax=Novipirellula galeiformis TaxID=2528004 RepID=A0A5C6CC69_9BACT)

HSP 1 Score: 159 bits (402), Expect = 2.320e-47
Identity = 72/146 (49.32%), Postives = 103/146 (70.55%), Query Frame = 1
Query:    1 MGSFTKLTYHVVLSTKFHQPTITEDIQQEFNEYVGGTVCGQKGNLV*ISGIEDHVHLLLNIPPTKSVSNFIRDLKSSVSKWVNDSKLIEQEFRWQNGYGAFTVSHSQVEHVQRYIQNQEEHHRKLTFKEEYVAILKRHNIQFEDHY 438
            M +FT   +H++ STK+ +PTI  D Q +   Y+GG V GQ+G L+ I G+EDHVHLL  + PT ++S+ +R +KS+ SKW+N+   + ++F WQ+GY AF+VS SQ+  V  YI NQ EHHRK TF+EE++ ILK+HNI F+  Y
Sbjct:    1 MSTFTNRLFHIIYSTKYRKPTIRPDWQDDLYGYIGGIVRGQQGTLLKIGGVEDHVHLLAKLSPTVAISDVLRKIKSNSSKWINERPDVSRKFEWQSGYAAFSVSESQMPSVSEYIANQAEHHRKKTFEEEFLDILKKHNIDFDVRY 146          
BLAST of mRNA_P-canaliculata_contig101543.242.1 vs. uniprot
Match: A0A5C5YZD1_9BACT (Transposase IS200 like protein n=1 Tax=Planctomycetes bacterium CA13 TaxID=2527986 RepID=A0A5C5YZD1_9BACT)

HSP 1 Score: 159 bits (401), Expect = 3.290e-47
Identity = 71/146 (48.63%), Postives = 104/146 (71.23%), Query Frame = 1
Query:    1 MGSFTKLTYHVVLSTKFHQPTITEDIQQEFNEYVGGTVCGQKGNLV*ISGIEDHVHLLLNIPPTKSVSNFIRDLKSSVSKWVNDSKLIEQEFRWQNGYGAFTVSHSQVEHVQRYIQNQEEHHRKLTFKEEYVAILKRHNIQFEDHY 438
            M +FT L +H++ STK+ +P +  D Q +   Y+GG V  QKG L+ I G+EDHVHLL  + PT ++S+ +R +K++ SKW+N+   + ++F WQ+GY AF+VS SQ+  V  YI NQ EHHRK TF+EE++AILK+HNI+F+  Y
Sbjct:    1 MSTFTNLLFHIIYSTKYRKPAVCADWQDDLYGYIGGIVRDQKGTLLRIGGVEDHVHLLAKLSPTVAISDVLRTIKANSSKWINERSDVSRKFEWQSGYAAFSVSESQMPVVGEYIANQAEHHRKATFEEEFLAILKKHNIKFDMRY 146          
BLAST of mRNA_P-canaliculata_contig101543.242.1 vs. uniprot
Match: UPI0011F24332 (IS200/IS605 family transposase n=1 Tax=Roseiconus lacunae TaxID=2605694 RepID=UPI0011F24332)

HSP 1 Score: 153 bits (387), Expect = 4.390e-45
Identity = 71/146 (48.63%), Postives = 102/146 (69.86%), Query Frame = 1
Query:    1 MGSFTKLTYHVVLSTKFHQPTITEDIQQEFNEYVGGTVCGQKGNLV*ISGIEDHVHLLLNIPPTKSVSNFIRDLKSSVSKWVNDSKLIEQEFRWQNGYGAFTVSHSQVEHVQRYIQNQEEHHRKLTFKEEYVAILKRHNIQFEDHY 438
            M +FT L +H++ STK+ +PTI  + Q +   YVGG V  QKG L+ I G+EDHVHLL  + PT ++S+ +R  KS+ SKW+N+   + ++F WQ+GY AF+VS SQ+  V  Y  NQ EHHRK TF+EE++AIL +H+I+F+  Y
Sbjct:    1 MSAFTNLLFHIIHSTKYREPTIRSEWQDDLYAYVGGIVRDQKGTLLKIGGVEDHVHLLAKLSPTIAISDVLRTPKSNSSKWINERSDVTRKFEWQSGYAAFSVSESQLPAVAEYTANQAEHHRKKTFQEEFLAILPKHHIEFDMRY 146          
BLAST of mRNA_P-canaliculata_contig101543.242.1 vs. uniprot
Match: A0A0J1BJP8_RHOIS (Transposase n=3 Tax=Rhodopirellula TaxID=265488 RepID=A0A0J1BJP8_RHOIS)

HSP 1 Score: 152 bits (383), Expect = 1.780e-44
Identity = 66/146 (45.21%), Postives = 103/146 (70.55%), Query Frame = 1
Query:    1 MGSFTKLTYHVVLSTKFHQPTITEDIQQEFNEYVGGTVCGQKGNLV*ISGIEDHVHLLLNIPPTKSVSNFIRDLKSSVSKWVNDSKLIEQEFRWQNGYGAFTVSHSQVEHVQRYIQNQEEHHRKLTFKEEYVAILKRHNIQFEDHY 438
            M +FT L +H++ STK+ +P I  + Q E + Y+GG V  QKG L+ I G++DH+H+L  + PT ++S+ +R +KS+ SKW+N+   + ++F WQ+GY AF+VS SQ   V  YI NQ +HHRK TF++E+++ILKRH I+++  Y
Sbjct:    1 MSTFTNLLFHLIYSTKYRKPAIRSEWQDELHGYMGGIVRDQKGTLLRIGGVDDHIHMLAKLSPTIAISDVLRTIKSNSSKWINERSDVHRKFEWQSGYAAFSVSESQAPAVADYIANQADHHRKKTFEDEFLSILKRHRIEYDPRY 146          
BLAST of mRNA_P-canaliculata_contig101543.242.1 vs. uniprot
Match: A0A518AJP1_9BACT (Transposase IS200 like protein n=1 Tax=Aeoliella mucimassa TaxID=2527972 RepID=A0A518AJP1_9BACT)

HSP 1 Score: 150 bits (379), Expect = 6.370e-44
Identity = 73/145 (50.34%), Postives = 103/145 (71.03%), Query Frame = 1
Query:    4 GSFTKLTYHVVLSTKFHQPTITEDIQQEFNEYVGGTVCGQKGNLV*ISGIEDHVHLLLNIPPTKSVSNFIRDLKSSVSKWVNDSKLIEQEFRWQNGYGAFTVSHSQVEHVQRYIQNQEEHHRKLTFKEEYVAILKRHNIQFEDHY 438
             +FT L YHVV STK+ +PTI E+++++   YVGG V  + G L  + G+ DH+HLLL +PPT +VS+ IR +K++ SKWVN+       F+WQ GYGAF+VS SQ E V+ YI+NQEEHHRK  F EE++ +L+RH+I ++  Y
Sbjct:    3 STFTCLDYHVVFSTKYRKPTIREELREKLYRYVGGIVRAENGCLREVGGMPDHIHLLLALPPTIAVSDAIRMVKTNSSKWVNERGDQPTRFQWQTGYGAFSVSASQREVVRHYIRNQEEHHRKRDFNEEFLEMLERHHIDYDPKY 147          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101543.242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4P5ZB65_9BACT1.770e-5154.23Transposase n=1 Tax=Verrucomicrobia bacterium TaxI... [more]
A0A4P5YDY1_9BACT7.180e-5154.11Transposase n=1 Tax=Planctomycetia bacterium TaxID... [more]
A0A5C6ALG4_9BACT2.120e-5054.55Transposase IS200 like protein n=1 Tax=Rhodopirell... [more]
A0A3E0Q938_9BACT2.120e-5048.95IS200/IS605 family transposase n=1 Tax=Planctomyce... [more]
M5RL54_9BACT1.220e-4948.63Transposase IS200-family protein n=2 Tax=Rhodopire... [more]
A0A5C6CC69_9BACT2.320e-4749.32Transposase IS200 like protein n=1 Tax=Novipirellu... [more]
A0A5C5YZD1_9BACT3.290e-4748.63Transposase IS200 like protein n=1 Tax=Planctomyce... [more]
UPI0011F243324.390e-4548.63IS200/IS605 family transposase n=1 Tax=Roseiconus ... [more]
A0A0J1BJP8_RHOIS1.780e-4445.21Transposase n=3 Tax=Rhodopirellula TaxID=265488 Re... [more]
A0A518AJP1_9BACT6.370e-4450.34Transposase IS200 like protein n=1 Tax=Aeoliella m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101543contigP-canaliculata_contig101543:572..1009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size438
Cds size141
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.6300073-CDS-P-canaliculata_contig101543:571..7121622815588.6300073-CDS-P-canaliculata_contig101543:571..712Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101543 572..712 +
1693494153.1128142-CDS-P-canaliculata_contig101543:571..7121693494153.1128142-CDS-P-canaliculata_contig101543:571..712Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101543 572..712 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.641061-UTR-P-canaliculata_contig101543:712..10091622815588.641061-UTR-P-canaliculata_contig101543:712..1009Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101543 713..1009 +
1693494153.126161-UTR-P-canaliculata_contig101543:712..10091693494153.126161-UTR-P-canaliculata_contig101543:712..1009Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101543 713..1009 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101543.242.1prot_P-canaliculata_contig101543.242.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101543 572..712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101543.242.1

>prot_P-canaliculata_contig101543.242.1 ID=prot_P-canaliculata_contig101543.242.1|Name=mRNA_P-canaliculata_contig101543.242.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=47bp
MGSFTKLTYHVVLSTKFHQPTITEDIQQEFNEYVGGTVCGQKGNLV*
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mRNA from alignment at P-canaliculata_contig101543:572..1009+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101543.242.1 ID=mRNA_P-canaliculata_contig101543.242.1|Name=mRNA_P-canaliculata_contig101543.242.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=438bp|location=Sequence derived from alignment at P-canaliculata_contig101543:572..1009+ (Pelvetia canaliculata dioecious)
ATGGGATCATTTACTAAACTAACCTACCATGTCGTCCTCAGCACAAAATT TCATCAACCGACGATCACCGAAGATATCCAACAGGAATTTAACGAGTACG TCGGCGGAACAGTCTGCGGTCAAAAGGGAAACCTCGTTTAAATTAGCGGT ATCGAAGACCACGTCCACCTTTTGCTAAACATCCCCCCAACAAAATCCGT TTCAAATTTCATTCGTGATCTGAAATCAAGCGTTTCAAAATGGGTCAATG ATTCAAAATTAATAGAACAGGAATTTCGATGGCAAAACGGGTACGGTGCG TTCACCGTCAGTCACTCGCAAGTTGAACATGTCCAGCGATACATTCAAAA CCAAGAAGAGCATCATCGCAAATTAACATTTAAAGAGGAATACGTGGCGA TCTTGAAACGACACAACATTCAGTTCGAAGATCATTAT
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Coding sequence (CDS) from alignment at P-canaliculata_contig101543:572..1009+

>mRNA_P-canaliculata_contig101543.242.1 ID=mRNA_P-canaliculata_contig101543.242.1|Name=mRNA_P-canaliculata_contig101543.242.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at P-canaliculata_contig101543:572..1009+ (Pelvetia canaliculata dioecious)
ATGGGATCATTTACTAAACTAACCTACCATGTCGTCCTCAGCACAAAATT
TCATCAACCGACGATCACCGAAGATATCCAACAGGAATTTAACGAGTACG
TCGGCGGAACAGTCTGCGGTCAAAAGGGAAACCTCGTTTAAATGGGATCA
TTTACTAAACTAACCTACCATGTCGTCCTCAGCACAAAATTTCATCAACC
GACGATCACCGAAGATATCCAACAGGAATTTAACGAGTACGTCGGCGGAA
CAGTCTGCGGTCAAAAGGGAAACCTCGTTTAA
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