mRNA_P-canaliculata_contig101543.242.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig101543.242.1 vs. uniprot
Match: A0A4P5ZB65_9BACT (Transposase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A4P5ZB65_9BACT) HSP 1 Score: 169 bits (429), Expect = 1.770e-51 Identity = 77/142 (54.23%), Postives = 110/142 (77.46%), Query Frame = 1 Query: 1 MGSFTKLTYHVVLSTKFHQPTITEDIQQEFNEYVGGTVCGQKGNLV*ISGIEDHVHLLLNIPPTKSVSNFIRDLKSSVSKWVNDSKLIEQEFRWQNGYGAFTVSHSQVEHVQRYIQNQEEHHRKLTFKEEYVAILKRHNIQF 426 MGSFT+LTYH+V +TK+ + TITE IQ+ EY+GGT+ G+KG+L+ I G+EDHVHLL + P+ +VS+ IRD+K+S S W+ + + I F WQ GYGAFTVS+ +++ +++YIQNQ+EHHR TF+EEY+ L+RH I+F Sbjct: 1 MGSFTRLTYHIVFATKYRKRTITEQIQERLYEYIGGTLRGKKGHLIEIGGVEDHVHLLAGLSPSLAVSDVIRDVKASSSLWMKEERQIAG-FEWQKGYGAFTVSYDRIDAIRKYIQNQKEHHRTKTFQEEYIDFLQRHGIEF 141
BLAST of mRNA_P-canaliculata_contig101543.242.1 vs. uniprot
Match: A0A4P5YDY1_9BACT (Transposase n=1 Tax=Planctomycetia bacterium TaxID=2052181 RepID=A0A4P5YDY1_9BACT) HSP 1 Score: 168 bits (425), Expect = 7.180e-51 Identity = 79/146 (54.11%), Postives = 110/146 (75.34%), Query Frame = 1 Query: 1 MGSFTKLTYHVVLSTKFHQPTITEDIQQEFNEYVGGTVCGQKGNLV*ISGIEDHVHLLLNIPPTKSVSNFIRDLKSSVSKWVNDSKLIEQEFRWQNGYGAFTVSHSQVEHVQRYIQNQEEHHRKLTFKEEYVAILKRHNIQFEDHY 438 MGSFT LTYHVV +TK+ + +IT +IQ+ EY+GGT+ G+KG+L+ I GIEDHVHLL + P +VS+ IRD+K+S SKW+ + ++Q F WQ GYGAFTVS+ +VE +++YI+NQ EHH+ TF+EEY+ L+RH I+F Y Sbjct: 1 MGSFTLLTYHVVFATKYRKRSITAEIQERLYEYMGGTLRGKKGHLIEIGGIEDHVHLLAGLSPVLAVSDVIRDVKASSSKWMREVGCVDQ-FEWQKGYGAFTVSYDRVEAIRKYIRNQVEHHKTKTFQEEYIDFLQRHGIEFRTEY 145
BLAST of mRNA_P-canaliculata_contig101543.242.1 vs. uniprot
Match: A0A5C6ALG4_9BACT (Transposase IS200 like protein n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C6ALG4_9BACT) HSP 1 Score: 167 bits (422), Expect = 2.120e-50 Identity = 78/143 (54.55%), Postives = 107/143 (74.83%), Query Frame = 1 Query: 1 MGSFTKLTYHVVLSTKFHQPTITEDIQQEFNEYVGGTVCGQKGNLV*ISGIEDHVHLLLNIPPTKSVSNFIRDLKSSVSKWVNDSKLIEQEFRWQNGYGAFTVSHSQVEHVQRYIQNQEEHHRKLTFKEEYVAILKRHNIQFE 429 M SFTKLTYH V STK+ +P I + +++ EY+GG V + G L+ I GIEDH+HLLL++ T++VSN IRD+K++ S+WVN+ I++ F WQ GY AFTVS+ Q+ V+RYI NQ +HHRKLTF EEY + LKRH+I+F+ Sbjct: 1 MSSFTKLTYHAVWSTKYRKPIIVDSLRERLYEYIGGIVRQKDGVLLEIGGIEDHIHLLLHVSATQTVSNAIRDIKANASRWVNELPEIKRRFEWQKGYSAFTVSYPQLPKVRRYIINQRKHHRKLTFAEEYRSFLKRHDIEFD 143
BLAST of mRNA_P-canaliculata_contig101543.242.1 vs. uniprot
Match: A0A3E0Q938_9BACT (IS200/IS605 family transposase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0Q938_9BACT) HSP 1 Score: 167 bits (422), Expect = 2.120e-50 Identity = 70/143 (48.95%), Postives = 105/143 (73.43%), Query Frame = 1 Query: 1 MGSFTKLTYHVVLSTKFHQPTITEDIQQEFNEYVGGTVCGQKGNLV*ISGIEDHVHLLLNIPPTKSVSNFIRDLKSSVSKWVNDSKLIEQEFRWQNGYGAFTVSHSQVEHVQRYIQNQEEHHRKLTFKEEYVAILKRHNIQFE 429 MG++TKLTYHV+ TK +P+I E +++ EY+GGT+ G+L+ I G+EDH+H+L N+ P ++VS+ IRD+K++ S+W+N ++ +F WQ GY FTVSHS V VQ YIQ Q +HHR TF+EEY+A L+RH+++F+ Sbjct: 1 MGAYTKLTYHVIFGTKHRRPSIREQLRERLYEYIGGTIRELNGHLIQIGGVEDHLHILTNLTPARAVSDMIRDVKANASRWMNQLPQVKSQFEWQKGYAEFTVSHSNVPSVQAYIQKQRQHHRTTTFEEEYIAFLRRHDVEFK 143
BLAST of mRNA_P-canaliculata_contig101543.242.1 vs. uniprot
Match: M5RL54_9BACT (Transposase IS200-family protein n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5RL54_9BACT) HSP 1 Score: 165 bits (417), Expect = 1.220e-49 Identity = 71/146 (48.63%), Postives = 111/146 (76.03%), Query Frame = 1 Query: 1 MGSFTKLTYHVVLSTKFHQPTITEDIQQEFNEYVGGTVCGQKGNLV*ISGIEDHVHLLLNIPPTKSVSNFIRDLKSSVSKWVNDSKLIEQEFRWQNGYGAFTVSHSQVEHVQRYIQNQEEHHRKLTFKEEYVAILKRHNIQFEDHY 438 MGS+T+LTYHVV +TK+ P+I +I+++ E++GG + G+KG L+ I G+ DHVH+L + T +V++ IRD+K++ S+W+++ +++ F WQ GYGAFTVS+S++ V+ YIQNQE HHR++TF++EY+ LKRH+IQF Y Sbjct: 1 MGSYTQLTYHVVYATKYRDPSIIAEIREKLYEFIGGIIRGKKGRLIEIGGVADHVHILAQLSATLAVADVIRDVKANSSRWMHEQTAVKRTFEWQKGYGAFTVSYSRIPKVRSYIQNQETHHRRVTFQDEYINFLKRHDIQFRLEY 146
BLAST of mRNA_P-canaliculata_contig101543.242.1 vs. uniprot
Match: A0A5C6CC69_9BACT (Transposase IS200 like protein n=1 Tax=Novipirellula galeiformis TaxID=2528004 RepID=A0A5C6CC69_9BACT) HSP 1 Score: 159 bits (402), Expect = 2.320e-47 Identity = 72/146 (49.32%), Postives = 103/146 (70.55%), Query Frame = 1 Query: 1 MGSFTKLTYHVVLSTKFHQPTITEDIQQEFNEYVGGTVCGQKGNLV*ISGIEDHVHLLLNIPPTKSVSNFIRDLKSSVSKWVNDSKLIEQEFRWQNGYGAFTVSHSQVEHVQRYIQNQEEHHRKLTFKEEYVAILKRHNIQFEDHY 438 M +FT +H++ STK+ +PTI D Q + Y+GG V GQ+G L+ I G+EDHVHLL + PT ++S+ +R +KS+ SKW+N+ + ++F WQ+GY AF+VS SQ+ V YI NQ EHHRK TF+EE++ ILK+HNI F+ Y Sbjct: 1 MSTFTNRLFHIIYSTKYRKPTIRPDWQDDLYGYIGGIVRGQQGTLLKIGGVEDHVHLLAKLSPTVAISDVLRKIKSNSSKWINERPDVSRKFEWQSGYAAFSVSESQMPSVSEYIANQAEHHRKKTFEEEFLDILKKHNIDFDVRY 146
BLAST of mRNA_P-canaliculata_contig101543.242.1 vs. uniprot
Match: A0A5C5YZD1_9BACT (Transposase IS200 like protein n=1 Tax=Planctomycetes bacterium CA13 TaxID=2527986 RepID=A0A5C5YZD1_9BACT) HSP 1 Score: 159 bits (401), Expect = 3.290e-47 Identity = 71/146 (48.63%), Postives = 104/146 (71.23%), Query Frame = 1 Query: 1 MGSFTKLTYHVVLSTKFHQPTITEDIQQEFNEYVGGTVCGQKGNLV*ISGIEDHVHLLLNIPPTKSVSNFIRDLKSSVSKWVNDSKLIEQEFRWQNGYGAFTVSHSQVEHVQRYIQNQEEHHRKLTFKEEYVAILKRHNIQFEDHY 438 M +FT L +H++ STK+ +P + D Q + Y+GG V QKG L+ I G+EDHVHLL + PT ++S+ +R +K++ SKW+N+ + ++F WQ+GY AF+VS SQ+ V YI NQ EHHRK TF+EE++AILK+HNI+F+ Y Sbjct: 1 MSTFTNLLFHIIYSTKYRKPAVCADWQDDLYGYIGGIVRDQKGTLLRIGGVEDHVHLLAKLSPTVAISDVLRTIKANSSKWINERSDVSRKFEWQSGYAAFSVSESQMPVVGEYIANQAEHHRKATFEEEFLAILKKHNIKFDMRY 146
BLAST of mRNA_P-canaliculata_contig101543.242.1 vs. uniprot
Match: UPI0011F24332 (IS200/IS605 family transposase n=1 Tax=Roseiconus lacunae TaxID=2605694 RepID=UPI0011F24332) HSP 1 Score: 153 bits (387), Expect = 4.390e-45 Identity = 71/146 (48.63%), Postives = 102/146 (69.86%), Query Frame = 1 Query: 1 MGSFTKLTYHVVLSTKFHQPTITEDIQQEFNEYVGGTVCGQKGNLV*ISGIEDHVHLLLNIPPTKSVSNFIRDLKSSVSKWVNDSKLIEQEFRWQNGYGAFTVSHSQVEHVQRYIQNQEEHHRKLTFKEEYVAILKRHNIQFEDHY 438 M +FT L +H++ STK+ +PTI + Q + YVGG V QKG L+ I G+EDHVHLL + PT ++S+ +R KS+ SKW+N+ + ++F WQ+GY AF+VS SQ+ V Y NQ EHHRK TF+EE++AIL +H+I+F+ Y Sbjct: 1 MSAFTNLLFHIIHSTKYREPTIRSEWQDDLYAYVGGIVRDQKGTLLKIGGVEDHVHLLAKLSPTIAISDVLRTPKSNSSKWINERSDVTRKFEWQSGYAAFSVSESQLPAVAEYTANQAEHHRKKTFQEEFLAILPKHHIEFDMRY 146
BLAST of mRNA_P-canaliculata_contig101543.242.1 vs. uniprot
Match: A0A0J1BJP8_RHOIS (Transposase n=3 Tax=Rhodopirellula TaxID=265488 RepID=A0A0J1BJP8_RHOIS) HSP 1 Score: 152 bits (383), Expect = 1.780e-44 Identity = 66/146 (45.21%), Postives = 103/146 (70.55%), Query Frame = 1 Query: 1 MGSFTKLTYHVVLSTKFHQPTITEDIQQEFNEYVGGTVCGQKGNLV*ISGIEDHVHLLLNIPPTKSVSNFIRDLKSSVSKWVNDSKLIEQEFRWQNGYGAFTVSHSQVEHVQRYIQNQEEHHRKLTFKEEYVAILKRHNIQFEDHY 438 M +FT L +H++ STK+ +P I + Q E + Y+GG V QKG L+ I G++DH+H+L + PT ++S+ +R +KS+ SKW+N+ + ++F WQ+GY AF+VS SQ V YI NQ +HHRK TF++E+++ILKRH I+++ Y Sbjct: 1 MSTFTNLLFHLIYSTKYRKPAIRSEWQDELHGYMGGIVRDQKGTLLRIGGVDDHIHMLAKLSPTIAISDVLRTIKSNSSKWINERSDVHRKFEWQSGYAAFSVSESQAPAVADYIANQADHHRKKTFEDEFLSILKRHRIEYDPRY 146
BLAST of mRNA_P-canaliculata_contig101543.242.1 vs. uniprot
Match: A0A518AJP1_9BACT (Transposase IS200 like protein n=1 Tax=Aeoliella mucimassa TaxID=2527972 RepID=A0A518AJP1_9BACT) HSP 1 Score: 150 bits (379), Expect = 6.370e-44 Identity = 73/145 (50.34%), Postives = 103/145 (71.03%), Query Frame = 1 Query: 4 GSFTKLTYHVVLSTKFHQPTITEDIQQEFNEYVGGTVCGQKGNLV*ISGIEDHVHLLLNIPPTKSVSNFIRDLKSSVSKWVNDSKLIEQEFRWQNGYGAFTVSHSQVEHVQRYIQNQEEHHRKLTFKEEYVAILKRHNIQFEDHY 438 +FT L YHVV STK+ +PTI E+++++ YVGG V + G L + G+ DH+HLLL +PPT +VS+ IR +K++ SKWVN+ F+WQ GYGAF+VS SQ E V+ YI+NQEEHHRK F EE++ +L+RH+I ++ Y Sbjct: 3 STFTCLDYHVVFSTKYRKPTIREELREKLYRYVGGIVRAENGCLREVGGMPDHIHLLLALPPTIAVSDAIRMVKTNSSKWVNERGDQPTRFQWQTGYGAFSVSASQREVVRHYIRNQEEHHRKRDFNEEFLEMLERHHIDYDPKY 147 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101543.242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101543.242.1 >prot_P-canaliculata_contig101543.242.1 ID=prot_P-canaliculata_contig101543.242.1|Name=mRNA_P-canaliculata_contig101543.242.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=47bp MGSFTKLTYHVVLSTKFHQPTITEDIQQEFNEYVGGTVCGQKGNLV*back to top mRNA from alignment at P-canaliculata_contig101543:572..1009+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig101543.242.1 ID=mRNA_P-canaliculata_contig101543.242.1|Name=mRNA_P-canaliculata_contig101543.242.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=438bp|location=Sequence derived from alignment at P-canaliculata_contig101543:572..1009+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig101543:572..1009+ >mRNA_P-canaliculata_contig101543.242.1 ID=mRNA_P-canaliculata_contig101543.242.1|Name=mRNA_P-canaliculata_contig101543.242.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at P-canaliculata_contig101543:572..1009+ (Pelvetia canaliculata dioecious)back to top |