Homology
BLAST of mRNA_P-canaliculata_contig101428.234.1 vs. uniprot
Match: A0A7X0LKU8_9BACT (PilZ domain-containing protein n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0LKU8_9BACT) HSP 1 Score: 92.8 bits (229), Expect = 3.120e-20 Identity = 50/128 (39.06%), Postives = 75/128 (58.59%), Query Frame = 1 Query: 31 LKRAWTEALIALSGQNTPLQVVPMSEQGEAMPQARLRLL-AQRDDGGLVIECPRGPGPASALRPGVEVVLYLMHGTQRMKAGSRVVDRDPHALNAEMTVPAASLEPSYDVASAQRRECYRLPTGHLDL 411
++ W + L+ QN ++V P++E+GE +P R RLL A DG L++E P A + GV V +Y++ G+ RMKA SRV+D +LN + V A LEP ++SAQRR C+RL T + +
Sbjct: 10 IETTWHTTVAELASQNKTVEVRPLTERGEELPSFRARLLQADEKDGSLIVEKPANVEQAQVIAKGVAVQVYVITGSTRMKADSRVIDVGRFSLNKQTKVMAVRLEPMKKISSAQRRACFRLSTAGMGM 137
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 438 |
| Cds size | 438 |
| Stop | 0 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815587.9631617-CDS-P-canaliculata_contig101428:425..863 | 1622815587.9631617-CDS-P-canaliculata_contig101428:425..863 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig101428 426..863 - |
| 1693494152.7614644-CDS-P-canaliculata_contig101428:425..863 | 1693494152.7614644-CDS-P-canaliculata_contig101428:425..863 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig101428 426..863 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101428.234.1 >prot_P-canaliculata_contig101428.234.1 ID=prot_P-canaliculata_contig101428.234.1|Name=mRNA_P-canaliculata_contig101428.234.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=146bp
MKQSPAQSDRLKRAWTEALIALSGQNTPLQVVPMSEQGEAMPQARLRLLA
QRDDGGLVIECPRGPGPASALRPGVEVVLYLMHGTQRMKAGSRVVDRDPH
ALNAEMTVPAASLEPSYDVASAQRRECYRLPTGHLDLPPVRLTPLV back to topmRNA from alignment at P-canaliculata_contig101428:426..863- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig101428.234.1 ID=mRNA_P-canaliculata_contig101428.234.1|Name=mRNA_P-canaliculata_contig101428.234.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=438bp|location=Sequence derived from alignment at P-canaliculata_contig101428:426..863- (Pelvetia canaliculata dioecious)
ATGAAGCAGTCCCCCGCGCAATCCGATCGCCTGAAGCGGGCCTGGACGGA
GGCATTGATTGCGTTATCGGGCCAGAACACCCCGCTGCAGGTGGTCCCGA
TGTCGGAGCAGGGCGAGGCGATGCCCCAGGCCCGGCTGCGTTTGTTGGCC
CAAAGGGACGACGGGGGACTGGTCATTGAGTGTCCCCGCGGCCCCGGCCC
GGCGTCGGCCCTTCGTCCGGGCGTCGAAGTGGTTTTGTATCTGATGCACG
GCACGCAGCGGATGAAGGCGGGATCACGTGTGGTCGACCGGGACCCGCAC
GCACTCAACGCCGAGATGACGGTTCCGGCGGCATCCCTCGAGCCTTCGTA
CGACGTTGCTTCGGCTCAGCGACGGGAGTGTTACCGCCTGCCGACCGGCC
ACCTGGATCTGCCCCCGGTTCGGCTGACCCCGCTGGTG back to topCoding sequence (CDS) from alignment at P-canaliculata_contig101428:426..863- >mRNA_P-canaliculata_contig101428.234.1 ID=mRNA_P-canaliculata_contig101428.234.1|Name=mRNA_P-canaliculata_contig101428.234.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at P-canaliculata_contig101428:426..863- (Pelvetia canaliculata dioecious)
ATGAAGCAGTCCCCCGCGCAATCCGATCGCCTGAAGCGGGCCTGGACGGA
GGCATTGATTGCGTTATCGGGCCAGAACACCCCGCTGCAGGTGGTCCCGA
TGTCGGAGCAGGGCGAGGCGATGCCCCAGGCCCGGCTGCGTTTGTTGGCC
CAAAGGGACGACGGGGGACTGGTCATTGAGTGTCCCCGCGGCCCCGGCCC
GGCGTCGGCCCTTCGTCCGGGCGTCGAAGTGGTTTTGTATCTGATGCACG
GCACGCAGCGGATGAAGGCGGGATCACGTGTGGTCGACCGGGACCCGCAC
GCACTCAACGCCGAGATGACGGTTCCGGCGGCATCCCTCGAGCCTTCGTA
CGACGTTGCTTCGGCTCAGCGACGGGAGTGTTACCGCCTGCCGACCGGCC
ACCTGGATCTGCCCCCGGTTCGGCTGACCCCGCTGGTGATGAAGCAGTCC
CCCGCGCAATCCGATCGCCTGAAGCGGGCCTGGACGGAGGCATTGATTGC
GTTATCGGGCCAGAACACCCCGCTGCAGGTGGTCCCGATGTCGGAGCAGG
GCGAGGCGATGCCCCAGGCCCGGCTGCGTTTGTTGGCCCAAAGGGACGAC
GGGGGACTGGTCATTGAGTGTCCCCGCGGCCCCGGCCCGGCGTCGGCCCT
TCGTCCGGGCGTCGAAGTGGTTTTGTATCTGATGCACGGCACGCAGCGGA
TGAAGGCGGGATCACGTGTGGTCGACCGGGACCCGCACGCACTCAACGCC
GAGATGACGGTTCCGGCGGCATCCCTCGAGCCTTCGTACGACGTTGCTTC
GGCTCAGCGACGGGAGTGTTACCGCCTGCCGACCGGCCACCTGGATCTGC
CCCCGGTTCGGCTGACCCCGCTGGTG back to top
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