mRNA_P-canaliculata_contig101428.234.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-canaliculata_contig101428.234.1
Unique Name	mRNA_P-canaliculata_contig101428.234.1
Type	mRNA
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))

Homology

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BLAST of mRNA_P-canaliculata_contig101428.234.1 vs. uniprot
Match: A0A7X0LKU8_9BACT (PilZ domain-containing protein n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0LKU8_9BACT)

HSP 1 Score: 92.8 bits (229), Expect = 3.120e-20
Identity = 50/128 (39.06%), Postives = 75/128 (58.59%), Query Frame = 1

Query:   31 LKRAWTEALIALSGQNTPLQVVPMSEQGEAMPQARLRLL-AQRDDGGLVIECPRGPGPASALRPGVEVVLYLMHGTQRMKAGSRVVDRDPHALNAEMTVPAASLEPSYDVASAQRRECYRLPTGHLDL 411
            ++  W   +  L+ QN  ++V P++E+GE +P  R RLL A   DG L++E P     A  +  GV V +Y++ G+ RMKA SRV+D    +LN +  V A  LEP   ++SAQRR C+RL T  + +
Sbjct:   10 IETTWHTTVAELASQNKTVEVRPLTERGEELPSFRARLLQADEKDGSLIVEKPANVEQAQVIAKGVAVQVYVITGSTRMKADSRVIDVGRFSLNKQTKVMAVRLEPMKKISSAQRRACFRLSTAGMGM 137

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig101428.234.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig101428.234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1

ZOOM

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POSITION

0


Match Name	E-value	Identity	Description
A0A7X0LKU8_9BACT	3.120e-20	39.06	PilZ domain-containing protein n=1 Tax=Algisphaera...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig101428	contig	P-canaliculata_contig101428:426..863 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	438
Cds size	438
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815587.9631617-CDS-P-canaliculata_contig101428:425..863	1622815587.9631617-CDS-P-canaliculata_contig101428:425..863	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig101428 426..863 -
1693494152.7614644-CDS-P-canaliculata_contig101428:425..863	1693494152.7614644-CDS-P-canaliculata_contig101428:425..863	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig101428 426..863 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig101428.234.1	prot_P-canaliculata_contig101428.234.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig101428 426..863 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-canaliculata_contig101428:426..863-
coding sequence from alignment at P-canaliculata_contig101428:426..863-

protein sequence of mRNA_P-canaliculata_contig101428.234.1

>prot_P-canaliculata_contig101428.234.1 ID=prot_P-canaliculata_contig101428.234.1|Name=mRNA_P-canaliculata_contig101428.234.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=146bp
MKQSPAQSDRLKRAWTEALIALSGQNTPLQVVPMSEQGEAMPQARLRLLA
QRDDGGLVIECPRGPGPASALRPGVEVVLYLMHGTQRMKAGSRVVDRDPH
ALNAEMTVPAASLEPSYDVASAQRRECYRLPTGHLDLPPVRLTPLV

mRNA from alignment at P-canaliculata_contig101428:426..863-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-canaliculata_contig101428.234.1 ID=mRNA_P-canaliculata_contig101428.234.1|Name=mRNA_P-canaliculata_contig101428.234.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=438bp|location=Sequence derived from alignment at P-canaliculata_contig101428:426..863- (Pelvetia canaliculata dioecious)
ATGAAGCAGTCCCCCGCGCAATCCGATCGCCTGAAGCGGGCCTGGACGGA
GGCATTGATTGCGTTATCGGGCCAGAACACCCCGCTGCAGGTGGTCCCGA
TGTCGGAGCAGGGCGAGGCGATGCCCCAGGCCCGGCTGCGTTTGTTGGCC
CAAAGGGACGACGGGGGACTGGTCATTGAGTGTCCCCGCGGCCCCGGCCC
GGCGTCGGCCCTTCGTCCGGGCGTCGAAGTGGTTTTGTATCTGATGCACG
GCACGCAGCGGATGAAGGCGGGATCACGTGTGGTCGACCGGGACCCGCAC
GCACTCAACGCCGAGATGACGGTTCCGGCGGCATCCCTCGAGCCTTCGTA
CGACGTTGCTTCGGCTCAGCGACGGGAGTGTTACCGCCTGCCGACCGGCC
ACCTGGATCTGCCCCCGGTTCGGCTGACCCCGCTGGTG

Coding sequence (CDS) from alignment at P-canaliculata_contig101428:426..863-

>mRNA_P-canaliculata_contig101428.234.1 ID=mRNA_P-canaliculata_contig101428.234.1|Name=mRNA_P-canaliculata_contig101428.234.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at P-canaliculata_contig101428:426..863- (Pelvetia canaliculata dioecious)
ATGAAGCAGTCCCCCGCGCAATCCGATCGCCTGAAGCGGGCCTGGACGGA
GGCATTGATTGCGTTATCGGGCCAGAACACCCCGCTGCAGGTGGTCCCGA
TGTCGGAGCAGGGCGAGGCGATGCCCCAGGCCCGGCTGCGTTTGTTGGCC
CAAAGGGACGACGGGGGACTGGTCATTGAGTGTCCCCGCGGCCCCGGCCC
GGCGTCGGCCCTTCGTCCGGGCGTCGAAGTGGTTTTGTATCTGATGCACG
GCACGCAGCGGATGAAGGCGGGATCACGTGTGGTCGACCGGGACCCGCAC
GCACTCAACGCCGAGATGACGGTTCCGGCGGCATCCCTCGAGCCTTCGTA
CGACGTTGCTTCGGCTCAGCGACGGGAGTGTTACCGCCTGCCGACCGGCC
ACCTGGATCTGCCCCCGGTTCGGCTGACCCCGCTGGTGATGAAGCAGTCC
CCCGCGCAATCCGATCGCCTGAAGCGGGCCTGGACGGAGGCATTGATTGC
GTTATCGGGCCAGAACACCCCGCTGCAGGTGGTCCCGATGTCGGAGCAGG
GCGAGGCGATGCCCCAGGCCCGGCTGCGTTTGTTGGCCCAAAGGGACGAC
GGGGGACTGGTCATTGAGTGTCCCCGCGGCCCCGGCCCGGCGTCGGCCCT
TCGTCCGGGCGTCGAAGTGGTTTTGTATCTGATGCACGGCACGCAGCGGA
TGAAGGCGGGATCACGTGTGGTCGACCGGGACCCGCACGCACTCAACGCC
GAGATGACGGTTCCGGCGGCATCCCTCGAGCCTTCGTACGACGTTGCTTC
GGCTCAGCGACGGGAGTGTTACCGCCTGCCGACCGGCCACCTGGATCTGC
CCCCGGTTCGGCTGACCCCGCTGGTG