mRNA_P-canaliculata_contig10142.233.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10142.233.1
Unique NamemRNA_P-canaliculata_contig10142.233.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10142.233.1 vs. uniprot
Match: D7FYL5_ECTSI (MFAP1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL5_ECTSI)

HSP 1 Score: 318 bits (816), Expect = 8.670e-102
Identity = 160/194 (82.47%), Postives = 181/194 (93.30%), Query Frame = 1 
Query:  754 MTENHLGDNDSEGDAPDDDDDLDEELAFEEWKIRELNRVRREKDEREKAIKEREDTLRRRNMTEDERRLEDMMLGKHAVKDKAKIKFMQKYYHKGAFYMDEDSVETPDDVRKRSYHEPTLEDKFDKSQMPRVMQVKNFGRSGQTKWTHLANEDTTQWGSPWSQESHLATKMQHKMSGIGDIDGAF-RRKRKNED 1332
            MTENHLGDN+SEGDAPDDDDDLDEELAFEEWK+REL+RVR+EK+ERE AIKEREDTLRRRNMT+DERR+EDMMLGKH  KDK  IKFMQKYYHKGAFYMD+DS++  DDVR+RSY+EPTLEDKFDK+QMP+ MQVKNFGRSGQTKWTHLANEDTTQW S W+QE+H+ATKMQHKMSG+G+ID AF RRK+KN +
Sbjct:    1 MTENHLGDNESEGDAPDDDDDLDEELAFEEWKVRELSRVRKEKEERESAIKEREDTLRRRNMTDDERRMEDMMLGKHVGKDKGTIKFMQKYYHKGAFYMDDDSLKVEDDVRRRSYNEPTLEDKFDKTQMPKPMQVKNFGRSGQTKWTHLANEDTTQWDSAWAQETHVATKMQHKMSGVGNIDAAFKRRKKKNPE 194
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BLAST of mRNA_P-canaliculata_contig10142.233.1 vs. uniprot
Match: A0A7S2CMS0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMS0_9STRA)

HSP 1 Score: 229 bits (585), Expect = 1.850e-64
Identity = 128/253 (50.59%), Postives = 175/253 (69.17%), Query Frame = 1 
Query:  565 DEADGEQVLKPVFVPKARRETAAERARLEQEAKYKEHRRNIDKDIRIRETRQLAAQVVRREEEMTENHLGDNDSEGDAPDDDDDLDEELAFEEWKIRELNRVRREKDEREKAIKEREDTLRRRNMTEDERRLEDMMLGKHAVKDKAKIKFMQKYYHKGAFYMDEDSVETPDDVRKRSYHEPTLEDKFDKSQMPRVMQVKNFGRSGQTKWTHLANEDTTQWGSPWSQESHLATKMQHKMSGIGDIDGAFRRKRK 1323
            +  +  Q++KPVFV + +R T  E  R  +  + K     +  + R  ETR + A+ +RREE+M EN +GDNDS+ + P D DDLD+ +A+E WK+REL R+ R+   +EK  KE+E+T RRR +T+++R  ED+ LGK   +DKAK KF+QKYYHKGAFYMD++  E  D VR+R Y +PTLEDKFDK+ +PRVMQVK FG +GQTK+THL ++DTT+W SPW Q S L      KMSG+GDID   R++ K
Sbjct:  187 ESEEESQLMKPVFVSRNKRATILEAERKVKVEETKRKAAAVKLEQRKIETRNMVAEKIRREEQMVENQVGDNDSDDNMPSDTDDLDDPVAYEAWKVRELQRLTRDNAIKEKMKKEKEETERRRALTDEQRGAEDLALGKVKTEDKAKWKFLQKYYHKGAFYMDDEEHEKKD-VRQRKYDQPTLEDKFDKAALPRVMQVKKFGFAGQTKYTHLLDQDTTEWDSPWMQNSALRQTTDSKMSGLGDIDSGGRKRIK 438
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BLAST of mRNA_P-canaliculata_contig10142.233.1 vs. uniprot
Match: A0A7S2CP46_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CP46_9STRA)

HSP 1 Score: 210 bits (535), Expect = 7.520e-60
Identity = 117/232 (50.43%), Postives = 164/232 (70.69%), Query Frame = 1 
Query:  628 AAERARLEQEAKYKEHRRNIDKDIRIRETRQLAAQVVRREEEMTENHLGDNDSEGDAPDDDDDLDEELAFEEWKIRELNRVRREKDEREKAIKEREDTLRRRNMTEDERRLEDMMLGKHAVKDKAKIKFMQKYYHKGAFYMDEDSVETPDDVRKRSYHEPTLEDKFDKSQMPRVMQVKNFGRSGQTKWTHLANEDTTQWGSPWSQESHLATKMQHKMSGIGDIDGAFRRKRK 1323
            A E A+  QE + +E  R    + R  ETR + A+ +RR+EE  ENH+  NDS+ + P D DDLD+ +A+E WK+REL RV+R++D R    +E+ +T RRR +T+++R  ED  LGK+ V+DK K KFMQKYYHKGAFYMDE  ++  +DVRKR +   TL+DKFDK  +P+VMQVK FG SGQTK+THL ++DTT + +PW+Q++ L      KM+G+GDID A R+++K
Sbjct:    3 AGEGAKAAQEEE-RERARAAQLEKRKAETRNMVAEQIRRDEEQVENHVDGNDSDANMPSDTDDLDDPMAYEAWKVRELQRVKRDRDLRLVHEQEKAETERRRGLTDEQRAAEDAALGKNKVEDKGKWKFMQKYYHKGAFYMDETEMDA-EDVRKREFDGATLDDKFDKQALPKVMQVKKFGFSGQTKYTHLKDQDTTDFDNPWNQKNQLRANYDSKMAGVGDIDSAGRKRKK 232
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BLAST of mRNA_P-canaliculata_contig10142.233.1 vs. uniprot
Match: A0A7S2SCR4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCR4_9STRA)

HSP 1 Score: 211 bits (538), Expect = 2.670e-59
Identity = 124/249 (49.80%), Postives = 171/249 (68.67%), Query Frame = 1 
Query:  583 QVLKPVFVPKARRETAAERARLEQEAKYKEHRRNIDKDIRIRETRQLAAQVVRREEE--MTENHL--GDNDSEGDAPDDDDDLDEELAFEEWKIRELNRVRREKDEREKAIKEREDTLRRRNMTEDERRLEDMMLGKHAVKDKAKIKFMQKYYHKGAFYMDEDSVETPDDVRKRSYHEPTLEDKFDKSQMPRVMQVKNFGRSGQTKWTHLANEDTTQWGSPWSQESHLATKMQHKMSGIGDIDGAFRRK 1317
            Q+LKPVFVP+ +R T AER   E+    ++       + R  ETR + A+ VRRE++  M E     G NDS+   P D DD D+ + F  W++RE+ RV+R+ D R     ++ +T RRRN+T+ ER  ED  LGK+A KDK K +FMQKYYHKGAFYMD+++++  +DVRKRSY E TLEDKFDK  +P+V+QVK FG +G+TK+THLA++DTT W +PW Q+S+L  K   K+SG+GDID A R++
Sbjct:   53 QLLKPVFVPRTKRGTVAEREMQEKREASRQLIHEAALEQRKIETRNMVAEQVRREDDEGMLEPGSIGGGNDSDAGMPSDTDDADDPVVFASWRLREIQRVKRDVDARRAFDLDKAETERRRNLTDAERAAEDAALGKNAEKDKEKWRFMQKYYHKGAFYMDDETMDK-NDVRKRSYGEATLEDKFDKQALPKVLQVKKFGFAGRTKYTHLADQDTTDWNNPWMQKSNLREKYDSKLSGVGDIDRAGRKR 300
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BLAST of mRNA_P-canaliculata_contig10142.233.1 vs. uniprot
Match: A0A5D6XW28_9STRA (MFAP1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW28_9STRA)

HSP 1 Score: 195 bits (495), Expect = 3.090e-51
Identity = 113/253 (44.66%), Postives = 162/253 (64.03%), Query Frame = 1 
Query:  565 DEADGEQVLKPVFVPKARRETAAERARLEQEAKYKEHRRNIDKDIRIRETRQLAAQVVRREEEMTENHLGDNDSEGDAPDDDDDLDEELAFEEWKIRELNRVRREKDEREKAIKEREDTLRRRNMTEDERRLEDMMLGKHAVKDKAKIKFMQKYYHKGAFYMDEDSVETPDDVRKRSYHEPTLEDKFDKSQMPRVMQVKNFGRSGQTKWTHLANEDTTQWGSPWSQESHLATKMQHKMSGIGDIDGAFRRKRK 1323
            D   GE +LKPVFVPK  RET   +                  + R      L A+ +RRE+E  E   G   ++ + PDD D +D    + +W++RE+ R++R++D +E+  +E E+ LRRRNMTE+ER+ ED  L K    +KAK KFMQKY+HKG FY+DE SV+  DDVR+R     TLEDKF+K  +P+VMQVKNFGRSGQTK+THLA++DT+   S W++   +  K ++K+SG+ DI+G+ +R++K
Sbjct:  230 DSGAGEALLKPVFVPKKARETLKRQEXXXXXXXXXXQLEAARLESRXXXXXXLVAEEIRREQE--EGDAGGGATDVEMPDDTDGVDPAQEYRDWELREMRRIKRDRDRKEQKRQEAEEILRRRNMTEEERQAEDRKLKKDVRTEKAKWKFMQKYHHKGVFYVDETSVKDKDDVRRRDVSGATLEDKFNKEMLPKVMQVKNFGRSGQTKYTHLADQDTSHRDSLWARNDSIREKFKNKLSGVRDIEGSLKRRKK 480
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BLAST of mRNA_P-canaliculata_contig10142.233.1 vs. uniprot
Match: UPI00053C8333 (microfibrillar-associated protein 1-like n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C8333)

HSP 1 Score: 192 bits (489), Expect = 7.490e-51
Identity = 118/245 (48.16%), Postives = 158/245 (64.49%), Query Frame = 1 
Query:  565 DEADGEQVLKPVFVPKARRETAAERARLEQEAKYKEHRRNIDKDIRIRETRQLAAQVVRREEEMTENHLGDNDSEGDAPDDDDDLDEELAFEEWKIRELNRVRREKDEREKAIKEREDTLRRRNMTEDERRLEDMMLGKHAVKDKAKIKFMQKYYHKGAFYM-DEDSVETP---DDVRKRSYHEPTLEDKFDKSQMPRVMQVKNFGRSGQTKWTHLANEDTTQWGSPWSQESHLATKMQHKMSGI 1287
            +E  G  ++KPVFVPKA R+T AER RLE E +  E       +IR +ET+Q+  + VR++EE+ +N   D  +  D  D DD+++E   +E WK RE+ R++RE+D RE  +KERE+  + RNMTE ERR  +    K A   K K KFMQKYYHKGAF+  D D V      DD+ +R +  PT ED+ D+S +P+VMQVK+FGRSG+TKWTHL NEDTT W SPW+    L  K   KM+G+
Sbjct:  173 EEMPGMAMVKPVFVPKAERDTIAERERLEAEERALEELAKRKLEIRKKETKQIVVEEVRKDEEIQKNMEMDEANIADV-DTDDEMNEAEEYEVWKTREIARIKRERDAREAMVKEREEIEKLRNMTEQERREWERKNPKPAGPQKQKWKFMQKYYHKGAFFQSDVDDVAASVGTDDIFQRDFSAPTGEDRLDRSILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNSPWTSNDPLRDKYNSKMAGM 416
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BLAST of mRNA_P-canaliculata_contig10142.233.1 vs. uniprot
Match: A0A485L535_9STRA (Aste57867_15717 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L535_9STRA)

HSP 1 Score: 191 bits (486), Expect = 2.270e-50
Identity = 117/260 (45.00%), Postives = 179/260 (68.85%), Query Frame = 1 
Query:  565 DEADGEQVLKPVFVPKARRETAAERARLEQEAKYKEHR------RNIDKDIRIRETRQLAAQVVRREEEMTENHLGDNDSEGDAPDDDDDLDEELAFEEWKIRELNRVRREKDEREKAIKEREDTLRRRNMTEDERRLEDMMLGKHAVKDKAKIKFMQKYYHKGAFYMDEDSVETPDDVRKRSYHEPTLEDKFDKSQMPRVMQVKNFGRSGQTKWTHLANEDTTQWGSPWSQESHLATKMQHKMSGIGDID-GAFRRKRK 1323
            DE++GEQ+LKP+FVPK  R+T  E+   E++ K  E R      R ++K     E+R++ A+V++REE   + HL +  ++ + PDD D +  E   +EW++RE+ R++R++D RE   ++ ++TLRRRNMT++ER  ED+ LGK   K+K K KF+QKYYHKGAFY+D+ SV+T  DVR+R   EPTLEDK ++  +P VMQVKNFG+SG+TK+THL ++DTT + +P  Q+  L  +   K+SG+  I+   ++R+R+
Sbjct:  189 DESEGEQMLKPIFVPKKARDTIREQ---EEKLKAMEERDQEAAKRAVEKKA---ESRKMVAEVLQREEAEAQ-HLMEVATDSEMPDDSDGVHPEQERQEWELREMRRLKRDRDARETRERDIQETLRRRNMTDEEREKEDLALGKLQEKEKKKWKFLQKYYHKGAFYVDDKSVKTDTDVRRRDADEPTLEDKLNRENLPTVMQVKNFGKSGRTKYTHLTDQDTTNFINPL-QDDELRAQYATKLSGLKPINPNPYKRQRR 440
[Close]
BLAST of mRNA_P-canaliculata_contig10142.233.1 vs. uniprot
Match: D5A929_PICSI (MFAP1 domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5A929_PICSI)

HSP 1 Score: 181 bits (458), Expect = 1.580e-48
Identity = 110/238 (46.22%), Postives = 154/238 (64.71%), Query Frame = 1 
Query:  586 VLKPVFVPKARRETAAERARLEQEAKYKEHRRNIDKDIRIRETRQLAAQVVRREEEMTENHLGDNDSEGDAPDDDDDLDEELAFEEWKIRELNRVRREKDEREKAIKEREDTLRRRNMTEDERRLEDMMLGKHAVKDKAKIKFMQKYYHKGAFYMD--EDSVETP--DDVRKRSYHEPTLEDKFDKSQMPRVMQVKNFGRSGQTKWTHLANEDTTQWGSPWSQESHLATKMQHKMSGI 1287
            ++KPVFVPKA R+T AER RLE E K  E       + R  ET+Q+  + +R++EE+ +N   + +  G   D DD+++E   +E WK RE+ R++R++D+RE  +KE+E+  + RNM EDERR  +    K   + K K KFMQKY+HKGAF+    +D V T   DD+ KR +  PT EDK DK+ +P+VMQVK+FGRSG+TKWTHL  EDTT W +PW+    L  K   KM+G+
Sbjct:    1 MIKPVFVPKAERDTIAERERLEAEEKALEEAMKKRLEERKVETKQILVEEIRKDEEIQKNLEAEGN--GGEIDTDDEINEAEEYEAWKAREIARIKRDRDDREAMLKEKEEIEKVRNMAEDERREWERKNPKSLPQPKQKWKFMQKYFHKGAFFQTPADDHVATAGEDDIFKRDFSSPTGEDKMDKTILPKVMQVKHFGRSGRTKWTHLVAEDTTDWNNPWTYNDPLRAKYNTKMAGM 236
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BLAST of mRNA_P-canaliculata_contig10142.233.1 vs. uniprot
Match: A0A0K9NTB2_ZOSMR (Microfibrillar-associated protein 1 n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NTB2_ZOSMR)

HSP 1 Score: 186 bits (471), Expect = 2.540e-48
Identity = 115/246 (46.75%), Postives = 162/246 (65.85%), Query Frame = 1 
Query:  565 DEADGEQVLKPVFVPKARRETAAERARLEQEAKYKEHRRNIDKDIRIRETRQLAAQVVRREEEMTENHLGDNDSEGDAPDDDDDLDEELAFEEWKIRELNRVRREKDEREKAIKEREDTLRRRNMTEDERRLEDMMLGKHAV-KDKAKIKFMQKYYHKGAFYM----DEDSVETPDDVRKRSYHEPTLEDKFDKSQMPRVMQVKNFGRSGQTKWTHLANEDTTQWGSPWSQESHLATKMQHKMSGI 1287
            DE  G  ++KPVFVPK+ R+T AER R+E E K  E R     + R  ET+Q+  + +R++E++ +N   D D+ GD  + DDDL+E   +E WK RE+ R++R+++ER+  +KE+E+  R RNMTE+ERR  +    K    ++K K +FMQKY+HKGAFY     D + V   DD+ +R +  PT EDK DKS +P+VMQVK+FGRSG+TKWTHL NEDTT W +PW+    L  K   KM+G+
Sbjct:  173 DEQMGIAMVKPVFVPKSERDTVAERERIEAEEKALEDRIKKRLEERKIETKQIVVEEIRKDEQIQKNLEVDADA-GDV-ETDDDLNEAEEYEAWKSREIARIKRDREERDARLKEKEEIERVRNMTEEERREWERKNPKTLPPQNKQKWRFMQKYFHKGAFYQTEADDRNGVPESDDIFRRDFSAPTGEDKMDKSILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNNPWTSTGPLQDKYHAKMAGM 416
[Close]
BLAST of mRNA_P-canaliculata_contig10142.233.1 vs. uniprot
Match: A0A3M6V8B9_9STRA (MFAP1 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V8B9_9STRA)

HSP 1 Score: 187 bits (474), Expect = 3.350e-48
Identity = 114/275 (41.45%), Postives = 168/275 (61.09%), Query Frame = 1 
Query:  565 DEADGEQVLKPVFVPKARRETAAERARLEQEAKYKEHRRNIDKDIRIRETRQLAAQVVRREEEMTENHLGDNDSEGDAPDDDDDLDEELAFEEWKIRELNRVRREKDEREKAIKEREDTLRRRNMTEDERRLEDMM----------------------LGKHAVKDKAKIKFMQKYYHKGAFYMDEDSVETPDDVRKRSYHEPTLEDKFDKSQMPRVMQVKNFGRSGQTKWTHLANEDTTQWGSPWSQESHLATKMQHKMSGIGDIDGAFRRKRK 1323
            D   GE+ +KPVFVPK  R T   +  L  E + +              +R+L A+  +RE+     + GD D++ + PDD D LD    + +W++RE+ R++R++D +E+ +KE E+ LRRRNMT++ER  ED                        L K+  K K K+KFMQKYYHKGAFY+D+DSV + +DVRKR   E TLEDKF+K  +P VMQVKNFGR+G+TK+THLA++DT+   S W+++  +  K + ++ G+ DIDG+ +R+RK
Sbjct:  221 DSEPGEEFMKPVFVPKRARGTIKRQEELAAEEERRXXXXXXXXXXXXXXSRRLVAEDTQREQNGA--NKGD-DTDVEMPDDTDGLDPVQEYRDWELREMRRIKRDRDRKEQRVKEEEEALRRRNMTQEERTAEDAYVLLCNNEEADCDLLRYFLTVSKLKKNEPKQKHKLKFMQKYYHKGAFYVDDDSVGSKNDVRKRDATEATLEDKFNKEMLPTVMQVKNFGRAGRTKYTHLADQDTSSRDSLWARDDGIREKYKSRLGGMKDIDGSTKRRRK 492
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10142.233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYL5_ECTSI8.670e-10282.47MFAP1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S2CMS0_9STRA1.850e-6450.59Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2CP46_9STRA7.520e-6050.43Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2SCR4_9STRA2.670e-5949.80Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A5D6XW28_9STRA3.090e-5144.66MFAP1 domain-containing protein n=1 Tax=Pythium br... [more]
UPI00053C83337.490e-5148.16microfibrillar-associated protein 1-like n=2 Tax=T... [more]
A0A485L535_9STRA2.270e-5045.00Aste57867_15717 protein n=1 Tax=Aphanomyces stella... [more]
D5A929_PICSI1.580e-4846.22MFAP1 domain-containing protein n=1 Tax=Picea sitc... [more]
A0A0K9NTB2_ZOSMR2.540e-4846.75Microfibrillar-associated protein 1 n=1 Tax=Zoster... [more]
A0A3M6V8B9_9STRA3.350e-4841.45MFAP1 domain-containing protein n=2 Tax=Peronospor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10142contigP-canaliculata_contig10142:1490..7252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score324.3
Seed ortholog evalue3.9e-86
Seed eggNOG ortholog2880.D7FYL5
Preferred nameMFAP1
KEGG koko:K13110
GOsGO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0001527,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007346,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010389,GO:0010467,GO:0010468,GO:0010564,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0031012,GO:0031323,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043484,GO:0044237,GO:0044238,GO:0044420,GO:0044421,GO:0044424,GO:0044464,GO:0046483,GO:0048024,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051726,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0099080,GO:0099081,GO:0099512,GO:1901360,GO:1901987,GO:1901990,GO:1902749,GO:1903311
EggNOG free text desc.RNA splicing
EggNOG OGsKOG1425@1,KOG1425@2759
Ec32 ortholog descriptionSplicing factor, Prp19-binding domain containing protein
Ec32 orthologEc-26_002680.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Hectar predicted targeting categoryother localisation
Exons11
Model size2102
Cds size597
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.7471404-UTR-P-canaliculata_contig10142:1489..22411622815587.7471404-UTR-P-canaliculata_contig10142:1489..2241Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10142 1490..2241 -
1693494152.634304-UTR-P-canaliculata_contig10142:1489..22411693494152.634304-UTR-P-canaliculata_contig10142:1489..2241Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10142 1490..2241 -
1622815587.8396766-UTR-P-canaliculata_contig10142:4057..41171622815587.8396766-UTR-P-canaliculata_contig10142:4057..4117Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10142 4058..4117 -
1693494152.6926765-UTR-P-canaliculata_contig10142:4057..41171693494152.6926765-UTR-P-canaliculata_contig10142:4057..4117Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10142 4058..4117 -
1622815587.858487-UTR-P-canaliculata_contig10142:4421..45291622815587.858487-UTR-P-canaliculata_contig10142:4421..4529Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10142 4422..4529 -
1693494152.707182-UTR-P-canaliculata_contig10142:4421..45291693494152.707182-UTR-P-canaliculata_contig10142:4421..4529Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10142 4422..4529 -
1622815587.8746412-UTR-P-canaliculata_contig10142:4944..50231622815587.8746412-UTR-P-canaliculata_contig10142:4944..5023Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10142 4945..5023 -
1693494152.7184248-UTR-P-canaliculata_contig10142:4944..50231693494152.7184248-UTR-P-canaliculata_contig10142:4944..5023Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10142 4945..5023 -
1622815587.885806-UTR-P-canaliculata_contig10142:5736..59231622815587.885806-UTR-P-canaliculata_contig10142:5736..5923Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10142 5737..5923 -
1693494152.7292383-UTR-P-canaliculata_contig10142:5736..59231693494152.7292383-UTR-P-canaliculata_contig10142:5736..5923Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10142 5737..5923 -
1622815587.8962944-UTR-P-canaliculata_contig10142:6724..68531622815587.8962944-UTR-P-canaliculata_contig10142:6724..6853Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10142 6725..6853 -
1693494152.7422702-UTR-P-canaliculata_contig10142:6724..68531693494152.7422702-UTR-P-canaliculata_contig10142:6724..6853Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10142 6725..6853 -
1622815587.911878-UTR-P-canaliculata_contig10142:7062..72521622815587.911878-UTR-P-canaliculata_contig10142:7062..7252Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10142 7063..7252 -
1693494152.7522576-UTR-P-canaliculata_contig10142:7062..72521693494152.7522576-UTR-P-canaliculata_contig10142:7062..7252Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10142 7063..7252 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.7588418-CDS-P-canaliculata_contig10142:2241..23411622815587.7588418-CDS-P-canaliculata_contig10142:2241..2341Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10142 2242..2341 -
1693494152.645695-CDS-P-canaliculata_contig10142:2241..23411693494152.645695-CDS-P-canaliculata_contig10142:2241..2341Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10142 2242..2341 -
1622815587.7729237-CDS-P-canaliculata_contig10142:2763..28581622815587.7729237-CDS-P-canaliculata_contig10142:2763..2858Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10142 2764..2858 -
1693494152.653294-CDS-P-canaliculata_contig10142:2763..28581693494152.653294-CDS-P-canaliculata_contig10142:2763..2858Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10142 2764..2858 -
1622815587.784373-CDS-P-canaliculata_contig10142:3025..31301622815587.784373-CDS-P-canaliculata_contig10142:3025..3130Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10142 3026..3130 -
1693494152.6607056-CDS-P-canaliculata_contig10142:3025..31301693494152.6607056-CDS-P-canaliculata_contig10142:3025..3130Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10142 3026..3130 -
1622815587.7979417-CDS-P-canaliculata_contig10142:3279..34231622815587.7979417-CDS-P-canaliculata_contig10142:3279..3423Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10142 3280..3423 -
1693494152.6683571-CDS-P-canaliculata_contig10142:3279..34231693494152.6683571-CDS-P-canaliculata_contig10142:3279..3423Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10142 3280..3423 -
1622815587.8148854-CDS-P-canaliculata_contig10142:3640..37211622815587.8148854-CDS-P-canaliculata_contig10142:3640..3721Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10142 3641..3721 -
1693494152.6761992-CDS-P-canaliculata_contig10142:3640..37211693494152.6761992-CDS-P-canaliculata_contig10142:3640..3721Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10142 3641..3721 -
1622815587.8271646-CDS-P-canaliculata_contig10142:3985..40571622815587.8271646-CDS-P-canaliculata_contig10142:3985..4057Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10142 3986..4057 -
1693494152.6848338-CDS-P-canaliculata_contig10142:3985..40571693494152.6848338-CDS-P-canaliculata_contig10142:3985..4057Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10142 3986..4057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10142.233.1prot_P-canaliculata_contig10142.233.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10142 2242..4057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10142.233.1

>prot_P-canaliculata_contig10142.233.1 ID=prot_P-canaliculata_contig10142.233.1|Name=mRNA_P-canaliculata_contig10142.233.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=199bp
MTENHLGDNDSEGDAPDDDDDLDEELAFEEWKIRELNRVRREKDEREKAI
KEREDTLRRRNMTEDERRLEDMMLGKHAVKDKAKIKFMQKYYHKGAFYMD
EDSVETPDDVRKRSYHEPTLEDKFDKSQMPRVMQVKNFGRSGQTKWTHLA
NEDTTQWGSPWSQESHLATKMQHKMSGIGDIDGAFRRKRKNEDPKFPE*
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mRNA from alignment at P-canaliculata_contig10142:1490..7252-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10142.233.1 ID=mRNA_P-canaliculata_contig10142.233.1|Name=mRNA_P-canaliculata_contig10142.233.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=5763bp|location=Sequence derived from alignment at P-canaliculata_contig10142:1490..7252- (Pelvetia canaliculata dioecious)
ACCAGTGAGCTAAATGACAATCATGAAACCCTCAAGCCGAAACGCGACCC
TTCCAAGAAGATTTATATCTACCGAGCGGGTCAAGTTCCGGGATGGGTTC
ACGAAGAGGAGAAGATCGAGGCACCCGCCGCCAAGTCCAAGAAAGTCAAG
CAGAAGCAGAGGGTTGCTGTGGAACGAGCGCGTGCCGAAGGTGATAAATA
GTTATGAATAGTTGAAAGGCCGTACTTGTATGCAGCATGACCGCGAAGAA
TGACCCAGCATCGAGGCTGTAAACTGATCTGGTATGTCACGTACGTTCTC
GACAAGTGCTCGTCAGACGTATCGCATCTCAGTTTGTATTACTCCGGAAC
CGTATCGTTGTAATTGCGTACCCTTCCATACCTTCCCGTGACACGGCAGA
TTATGCAGCAGCTTCAGCTGGAGGATGGTCACGTTCAATCCGAGAAGCTC
ACGTGCTCGATGAAGACAGCGACAGTGCTGATAGTGATGATAGCGGTCCC
GTTTTTGGAGGCCGTTCGGACGATGAAGGTAATGATGGCCAACGTGCAGG
TAACTTTGCACAACAGTACTACTGTACTGTACCAGCTATTTTTAATAATA
CTATAATTACGAACTTGGGGCAGTTCATAATAATAATTATACTAAAAGCT
CTATTAATACGTATCTCGCAGAAAACGCTATTGATATTACATGGTAACAT
TTAATACTTTTGGACACAGGCGTTCTTGACCCTCATTGACATTGGGGATT
GACATCGGAAGCGGGTGGAAAGAGTAGTAAGGCCTTTGTCTTTGTCCTTG
TCCTCCCTCGCTCTCTTGTGGCACGCGGGGTCTTCGTCATGCAGCGCTCA
TGGGCAGGCAGCCGCCTAATCCCCCCCAGGGTTGGGAATATCTGCCCCTT
ACCCCGACTCTAGCCTATAGAGTTGTTAATAGTACTGTACCTGGTGTACT
GTACTCGTAACCCTACATTTATAATTACTGACATGACGATGTGTTGCAGT
TATTGCTGTAGAGCTAATATATTAGTAATAGTAAGTTATAGTAATAGTGC
TATTGATTATCCTTGCATGTCGAGCGATCCCATCGGCAGGAAAGTAAAGA
AAATCCAAACATAGTTTTGTGGCGATGTTGCGATGTTGCGACACTCGATG
ATGCTGTCGCGCTCCGAGGCTGTGCTGTGCTGTCGTGACTCGATCGTATT
CTTCGCCCAGGAAGGAAAGAAAGAAGAAGAAAGAAAAACACTCCATTCCA
GTCGGTGTACCCCATATTATATATGATCATTGACTTCTGTCGACGTGGTT
GATTTCTTGCCGATACGGGTGCGCATCAGTCGATGGCGACGTGGCTTATC
GTCCAACGGGCGAGGCGGCGGACGCGGGACAAGTTGAAGAAGACGAGGAT
GACGATGCTATCGCAGCTCGCAGGGCGCGCGTGAGGGACCGGCTTAGAGC
TCGCAGGGCACGAGAGGCGGAGGTGCTAGAGGTGCAACAAGAGGAACAAG
AGGACGAGATCGCCAAGTAAGAAAAGCTCACCTTATATTCATATTTGTAT
TTGTATTTGTACTATTGTAGTCTATTAATACTATAGTACCGTATAACTCT
TGTACAATGTACAAACCACAGCAGTTTAAGATCGAACGCTGTTGATCGCC
TTGGAAAATAAAATGGAGGTTGTTCGTATGGACGGCCGGTCCCCCAGGTG
GTTCAGTTGGTAACCTCGAAACTTCTGACGTTGGGACGTGGGTTCGAATC
TCGGTGCAGTCACACGAACTGGGATTTTTCCTCACAAAAAAAAAGTGGAA
AACGATCACTTCGTGGGTACACGAAATTCGACTTCACGGTCGACGGGGAA
AAAAATTACTGAATCCTTCTCGCGAGAAAAAATTAAGGCAAGCACCGCAG
AAAGAAGGTGGAGAAAACCTGCGTGACCCCGGCTGGTGCGTCCACAAGTC
TGACATCCAGAATCAATGGGATGACACACATCCACACACTACAGATTAAG
GTGGTGCCCGACTTGCCCAAGAAGGATGTTTTCGGTGTCGAATGTGTTGT
TTGTATGTTGATTTCCTCCCCTTTGTTACGAGTAAGGAACGTACAGGGTT
TACCCGTCGCTGGAGTTTTGTGCGGGCCCACCGCGTGAGCGCTGACTAGG
AGAAAACAATGTTGAAGAAATTGGGTGGTCGATGTGGCGAGAGCTCACAG
ACATCTCGTGGTCATTTCAACCGATCCAGGCCTGAAGAAGAGTCGGAGTC
TTCGGAATGGGAGACTGATACCGACGCAAGCGACGATGATGAAGCGGACG
GAGAGCAGGTTTGTTTTTGGGATGCCCTTGGAAATCCACTGGCACAGGAT
GTGTTCTTCATAATGCGTGAGCCAGAGCTGTTTGTCGATAGTACTGCTGA
GATGACAGCCACCGCCGGGCAACGACGATAGTCCAGTCGGAGGGAGTCGA
AAGGGAGTGGTTTACCGTCGGAGACGCACTTGTGCACTTACTTGTTGTCA
TTGTTTTATGTAGCTCATAACGTCCTTGGACAGTTGGTTTTATGAAGAAT
GTACTAATCCGATCTAGAGAGCTCCAGACCTGAACATAGCTTTCCAAGAT
ACAGTACACTCTTTATTTGTCGGACTTCGCACGATGGGTTATTTACTGCC
TGGTACTTATTTGCCTCAGTTACGAGCTAGCCCCTAGACTTCGTTTTACG
CCCGCGATCCCGGCATGTGGCAGGTGCTAAAACCCGTTTTCGTGCCAAAG
GCAAGGAGGGAGACTGCTGCTGAGAGGGCTCGACTTGAACAGGAAGCAAA
ATACAAAGAACACAGAAGAAATATTGATAAGGTACACAATTAATACAATA
CACTTTGGTAGACAAGAACACTAAGCCGTTGTACTAATTATAATAAGATT
ACAGTACATGCTCCAGCTGGGTGAAGTATAAAGTATGAAGTACTGTATGA
ATCAAGAAGTATCAATAGCTGTAGCTGCTGCACACTCCATTACCATCATC
TTGATGACCGTCATGTTGATGACGTGACGTGTCCGTTCACATGATATGAT
ATGATATGATATGATATGATATCACCACTTGGGCCGCACCGTGCGTACGA
CCTGCCAACACCAACACCAACACTTACACATACAGGATATCCGAATACGC
GAGACGAGGCAGCTAGCGGCGCAGGTGGTCCGCCGAGAGGAGGAAATGAC
GGAGAACCACCTGGGTGACAACGATAGTGAAGGAGATGCCCCTGACGACG
ATGACGATCTCGACGAGGTAAACGTACCCTGTTCAGCCCCAACGAAAATT
TGCATACTTCGCGGTGCTCCCTTACGTGTTGCATCTATTGGTGTATTCGT
TATTCGTGAATGGTACAAATGGGCCTCGGTAGGGGCTACGCAACCTTTGG
CAGTTCTTCCGCTTATATGCCCGCACTCAGTCACCACTCAGGATACAGGA
ATGTCCGCACTATTAACAGCTGAGTGTTGTCAGGACTGCTCCACTTGGCT
ATTGTTTATTGGTTATTGGTTATCGAAACAGGAGCTGGCATTCGAGGAGT
GGAAAATTCGCGAGCTGAATCGAGTGCGGAGGGAAAAAGACGAACGGGAA
AAAGCAATCAAGGTACAGTTGTCACATTTCTCTAGTGTACGAGTACAACG
TACTCATGTTATTAATACACTAGTTTATACAGTAGTTTAGTTGCACGTCT
GGCGAGGGGCGGACGCTGTGTCGCGATTTCGTGATGTCGTGATTTCGAGC
GAAAGCGGTTCAGACCACTTTATTTACGGCATTCCCACCCTTGACTGCGA
CTATGTCCACTGTATTTAAAATAAAAAAGGAACGGGAGGACACCCTTCGA
AGGAGAAATATGACTGAAGATGAACGCCGGCTGGAAGATATGATGCTCGG
CAAGCACGCCGTAAAAGATAAGGCTAAGATCAAGTTCATGCAAAAATACT
ACCACAAAGGTGCCTTCTACATGGTGAGTTTGCCGCGACGCGTTTTGGAA
CGGTATGGTTTGGTTCGGTTGTTTGGCTGTTTTAAAGATATGGGTTCAAC
CTTGCGAGACTTTCCCTGAGCACAACTTGCAACCGTGCCTCCTTTGTCTG
TTTAAATTGACATTTATAACAGGACGAAGACTCCGTTGAAACGCCAGACG
ACGTACGGAAACGGAGCTACCACGAGCCTACTCTTGAGGATAAATTCGAC
AAATCGCAGATGCCAAGAGTTATGCAGGTGACCAAGGGAAGGGAAGGAAG
ACTTTGTTCATTCTCGTGTTCTCGAGAAGTCAATTCTAGGGTTGCAGCCA
GTCTACTTGCATCGGGTGTACCAGGAGACGTGACCGTCCCTCATCCCCGT
CGCTGCTTGCGCCTGTGCTGTACTCCTCTGAACTCTTTGAAAAGGTCAAA
AATTTCGGGCGCTCTGGGCAAACCAAATGGACGCACCTGGCAAATGAAGA
CACAACACAGTGGGGTTCGCCTTGGTCGCAAGAATCACAGTGAGTCAATC
TCACCAACTCAAGTCATGCTCGTCTTGCTCAACGGCCACAACCCCTACCG
GCCCTACCGGCACTACTACTGTATTTGTTATTAATACCTGGTATCATAAT
AGTATAATAGTGGCGGTATCACTATTTAATACTCCGTTATAGCAGTGACT
GCGGCCTCGCCTGTAACATTCAAGTTTCTAATTTGCTTCTAAGTGTCCAA
TTTTTCAGTAGCATGTACCATGTAACATGTAACTTACTTCTTCCACGTAT
GAAAACCTATAGCTCGATGTGATGTATCTGGTAGTATCTGGTGTGCCTGA
ATCCAGCGTTCAACCGTCGCCGTTCCCCCGTCTCCCTCGTTCACCTTCAT
TGTCCCGCTGACTCGTTGACTCATTGACTCGCTGCAATATTACTGCTATT
TCTGCCACAAGCCTCGCGACCAAGATGCAACACAAAATGTCAGGGATTGG
CGACATCGATGGGGCCTTCAGGCGCAAGAGAAAGAACGAAGACCCCAAGT
TCCCCGAGTGAAGTCCAAACCAGGCCCAACACCTTTTGCTGGGTCTTTAG
CGTGGGTTCAGTGGTTTGTCTCGAGTTTGTACGCATGGTGGCTAGAAAAA
ACTCGCCATTTCCTAAGGAAGACAAGATCTGGATACATACCCGTTTGCCC
AAACAGGTCTCTAGGGGGTTGTCAACCCAAAAAGTGGCATGAATGGAGCA
ATCCAACTTGTACTAAATACAACGTACTTATTTCCTTCGTTAAGAGCGCA
ATAATTGCGGTCATCTGCCTGAATAAGGTCGGCGGAAAGATCCTATGGTG
TATTTTGCCGGAAAATAAAGCGACGTGTTGAACGTATTGAAAATATCGGG
GGAAGGGGACGGGGTATCATCCACCGGGAAAACCGTGCTTCCTGATGTTC
TAGGTGTTTATTTTTTTTAATCTGTCGATTTTTGCCTCAAGAGTCGGCGG
TTAAATCCGATACCACAGAGAAAAATCGCCACCAAAAACTATAAAAGCGA
TACTGTATATATATATGCCAGTTGTTCAAGTCTCGAGCGAAAAGTTGCCG
GCGGAAGCCTTCCAAGTGAAATTCAGGTCATAAAATCGCACACGAAGAAC
CAACCCTCCAAGCTCGATAACAAGTATTTAAAGTGGTTTACGATCGACCC
ATTCGACATGGTACGTAACGTATAAACTTCCTCGTACCAGAGATACTCGT
ACCTCTCCCAAGGAGTCAGGTCGTTCGTTGTTTTGCCGTATACATCCTGG
AGATGAAGTCGCC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10142:1490..7252-

>mRNA_P-canaliculata_contig10142.233.1 ID=mRNA_P-canaliculata_contig10142.233.1|Name=mRNA_P-canaliculata_contig10142.233.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1194bp|location=Sequence derived from alignment at P-canaliculata_contig10142:1490..7252- (Pelvetia canaliculata dioecious)
ATGACGGAGAACCACCTGGGTGACAACGATAGTGAAGGAGATGCCCCTGA
CGACGATGACGATCTCGACGAGATGACGGAGAACCACCTGGGTGACAACG
ATAGTGAAGGAGATGCCCCTGACGACGATGACGATCTCGACGAGGAGCTG
GCATTCGAGGAGTGGAAAATTCGCGAGCTGAATCGAGTGCGGAGGGAAAA
AGACGAACGGGAAAAAGCAATCAAGGAGCTGGCATTCGAGGAGTGGAAAA
TTCGCGAGCTGAATCGAGTGCGGAGGGAAAAAGACGAACGGGAAAAAGCA
ATCAAGGAACGGGAGGACACCCTTCGAAGGAGAAATATGACTGAAGATGA
ACGCCGGCTGGAAGATATGATGCTCGGCAAGCACGCCGTAAAAGATAAGG
CTAAGATCAAGTTCATGCAAAAATACTACCACAAAGGTGCCTTCTACATG
GAACGGGAGGACACCCTTCGAAGGAGAAATATGACTGAAGATGAACGCCG
GCTGGAAGATATGATGCTCGGCAAGCACGCCGTAAAAGATAAGGCTAAGA
TCAAGTTCATGCAAAAATACTACCACAAAGGTGCCTTCTACATGGACGAA
GACTCCGTTGAAACGCCAGACGACGTACGGAAACGGAGCTACCACGAGCC
TACTCTTGAGGATAAATTCGACAAATCGCAGATGCCAAGAGTTATGCAGG
ACGAAGACTCCGTTGAAACGCCAGACGACGTACGGAAACGGAGCTACCAC
GAGCCTACTCTTGAGGATAAATTCGACAAATCGCAGATGCCAAGAGTTAT
GCAGGTCAAAAATTTCGGGCGCTCTGGGCAAACCAAATGGACGCACCTGG
CAAATGAAGACACAACACAGTGGGGTTCGCCTTGGTCGCAAGAATCACAG
TCAAAAATTTCGGGCGCTCTGGGCAAACCAAATGGACGCACCTGGCAAAT
GAAGACACAACACAGTGGGGTTCGCCTTGGTCGCAAGAATCACACCTCGC
GACCAAGATGCAACACAAAATGTCAGGGATTGGCGACATCGATGGGGCCT
TCAGGCGCAAGAGAAAGAACGAAGACCCCAAGTTCCCCGAGTGACCTCGC
GACCAAGATGCAACACAAAATGTCAGGGATTGGCGACATCGATGGGGCCT
TCAGGCGCAAGAGAAAGAACGAAGACCCCAAGTTCCCCGAGTGA
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