mRNA_P-canaliculata_contig10142.233.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10142.233.1 vs. uniprot
Match: D7FYL5_ECTSI (MFAP1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL5_ECTSI) HSP 1 Score: 318 bits (816), Expect = 8.670e-102 Identity = 160/194 (82.47%), Postives = 181/194 (93.30%), Query Frame = 1 Query: 754 MTENHLGDNDSEGDAPDDDDDLDEELAFEEWKIRELNRVRREKDEREKAIKEREDTLRRRNMTEDERRLEDMMLGKHAVKDKAKIKFMQKYYHKGAFYMDEDSVETPDDVRKRSYHEPTLEDKFDKSQMPRVMQVKNFGRSGQTKWTHLANEDTTQWGSPWSQESHLATKMQHKMSGIGDIDGAF-RRKRKNED 1332
MTENHLGDN+SEGDAPDDDDDLDEELAFEEWK+REL+RVR+EK+ERE AIKEREDTLRRRNMT+DERR+EDMMLGKH KDK IKFMQKYYHKGAFYMD+DS++ DDVR+RSY+EPTLEDKFDK+QMP+ MQVKNFGRSGQTKWTHLANEDTTQW S W+QE+H+ATKMQHKMSG+G+ID AF RRK+KN +
Sbjct: 1 MTENHLGDNESEGDAPDDDDDLDEELAFEEWKVRELSRVRKEKEERESAIKEREDTLRRRNMTDDERRMEDMMLGKHVGKDKGTIKFMQKYYHKGAFYMDDDSLKVEDDVRRRSYNEPTLEDKFDKTQMPKPMQVKNFGRSGQTKWTHLANEDTTQWDSAWAQETHVATKMQHKMSGVGNIDAAFKRRKKKNPE 194
BLAST of mRNA_P-canaliculata_contig10142.233.1 vs. uniprot
Match: A0A7S2CMS0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMS0_9STRA) HSP 1 Score: 229 bits (585), Expect = 1.850e-64 Identity = 128/253 (50.59%), Postives = 175/253 (69.17%), Query Frame = 1 Query: 565 DEADGEQVLKPVFVPKARRETAAERARLEQEAKYKEHRRNIDKDIRIRETRQLAAQVVRREEEMTENHLGDNDSEGDAPDDDDDLDEELAFEEWKIRELNRVRREKDEREKAIKEREDTLRRRNMTEDERRLEDMMLGKHAVKDKAKIKFMQKYYHKGAFYMDEDSVETPDDVRKRSYHEPTLEDKFDKSQMPRVMQVKNFGRSGQTKWTHLANEDTTQWGSPWSQESHLATKMQHKMSGIGDIDGAFRRKRK 1323
+ + Q++KPVFV + +R T E R + + K + + R ETR + A+ +RREE+M EN +GDNDS+ + P D DDLD+ +A+E WK+REL R+ R+ +EK KE+E+T RRR +T+++R ED+ LGK +DKAK KF+QKYYHKGAFYMD++ E D VR+R Y +PTLEDKFDK+ +PRVMQVK FG +GQTK+THL ++DTT+W SPW Q S L KMSG+GDID R++ K
Sbjct: 187 ESEEESQLMKPVFVSRNKRATILEAERKVKVEETKRKAAAVKLEQRKIETRNMVAEKIRREEQMVENQVGDNDSDDNMPSDTDDLDDPVAYEAWKVRELQRLTRDNAIKEKMKKEKEETERRRALTDEQRGAEDLALGKVKTEDKAKWKFLQKYYHKGAFYMDDEEHEKKD-VRQRKYDQPTLEDKFDKAALPRVMQVKKFGFAGQTKYTHLLDQDTTEWDSPWMQNSALRQTTDSKMSGLGDIDSGGRKRIK 438
BLAST of mRNA_P-canaliculata_contig10142.233.1 vs. uniprot
Match: A0A7S2CP46_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CP46_9STRA) HSP 1 Score: 210 bits (535), Expect = 7.520e-60 Identity = 117/232 (50.43%), Postives = 164/232 (70.69%), Query Frame = 1 Query: 628 AAERARLEQEAKYKEHRRNIDKDIRIRETRQLAAQVVRREEEMTENHLGDNDSEGDAPDDDDDLDEELAFEEWKIRELNRVRREKDEREKAIKEREDTLRRRNMTEDERRLEDMMLGKHAVKDKAKIKFMQKYYHKGAFYMDEDSVETPDDVRKRSYHEPTLEDKFDKSQMPRVMQVKNFGRSGQTKWTHLANEDTTQWGSPWSQESHLATKMQHKMSGIGDIDGAFRRKRK 1323
A E A+ QE + +E R + R ETR + A+ +RR+EE ENH+ NDS+ + P D DDLD+ +A+E WK+REL RV+R++D R +E+ +T RRR +T+++R ED LGK+ V+DK K KFMQKYYHKGAFYMDE ++ +DVRKR + TL+DKFDK +P+VMQVK FG SGQTK+THL ++DTT + +PW+Q++ L KM+G+GDID A R+++K
Sbjct: 3 AGEGAKAAQEEE-RERARAAQLEKRKAETRNMVAEQIRRDEEQVENHVDGNDSDANMPSDTDDLDDPMAYEAWKVRELQRVKRDRDLRLVHEQEKAETERRRGLTDEQRAAEDAALGKNKVEDKGKWKFMQKYYHKGAFYMDETEMDA-EDVRKREFDGATLDDKFDKQALPKVMQVKKFGFSGQTKYTHLKDQDTTDFDNPWNQKNQLRANYDSKMAGVGDIDSAGRKRKK 232
BLAST of mRNA_P-canaliculata_contig10142.233.1 vs. uniprot
Match: A0A7S2SCR4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCR4_9STRA) HSP 1 Score: 211 bits (538), Expect = 2.670e-59 Identity = 124/249 (49.80%), Postives = 171/249 (68.67%), Query Frame = 1 Query: 583 QVLKPVFVPKARRETAAERARLEQEAKYKEHRRNIDKDIRIRETRQLAAQVVRREEE--MTENHL--GDNDSEGDAPDDDDDLDEELAFEEWKIRELNRVRREKDEREKAIKEREDTLRRRNMTEDERRLEDMMLGKHAVKDKAKIKFMQKYYHKGAFYMDEDSVETPDDVRKRSYHEPTLEDKFDKSQMPRVMQVKNFGRSGQTKWTHLANEDTTQWGSPWSQESHLATKMQHKMSGIGDIDGAFRRK 1317
Q+LKPVFVP+ +R T AER E+ ++ + R ETR + A+ VRRE++ M E G NDS+ P D DD D+ + F W++RE+ RV+R+ D R ++ +T RRRN+T+ ER ED LGK+A KDK K +FMQKYYHKGAFYMD+++++ +DVRKRSY E TLEDKFDK +P+V+QVK FG +G+TK+THLA++DTT W +PW Q+S+L K K+SG+GDID A R++
Sbjct: 53 QLLKPVFVPRTKRGTVAEREMQEKREASRQLIHEAALEQRKIETRNMVAEQVRREDDEGMLEPGSIGGGNDSDAGMPSDTDDADDPVVFASWRLREIQRVKRDVDARRAFDLDKAETERRRNLTDAERAAEDAALGKNAEKDKEKWRFMQKYYHKGAFYMDDETMDK-NDVRKRSYGEATLEDKFDKQALPKVLQVKKFGFAGRTKYTHLADQDTTDWNNPWMQKSNLREKYDSKLSGVGDIDRAGRKR 300
BLAST of mRNA_P-canaliculata_contig10142.233.1 vs. uniprot
Match: A0A5D6XW28_9STRA (MFAP1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW28_9STRA) HSP 1 Score: 195 bits (495), Expect = 3.090e-51 Identity = 113/253 (44.66%), Postives = 162/253 (64.03%), Query Frame = 1 Query: 565 DEADGEQVLKPVFVPKARRETAAERARLEQEAKYKEHRRNIDKDIRIRETRQLAAQVVRREEEMTENHLGDNDSEGDAPDDDDDLDEELAFEEWKIRELNRVRREKDEREKAIKEREDTLRRRNMTEDERRLEDMMLGKHAVKDKAKIKFMQKYYHKGAFYMDEDSVETPDDVRKRSYHEPTLEDKFDKSQMPRVMQVKNFGRSGQTKWTHLANEDTTQWGSPWSQESHLATKMQHKMSGIGDIDGAFRRKRK 1323
D GE +LKPVFVPK RET + + R L A+ +RRE+E E G ++ + PDD D +D + +W++RE+ R++R++D +E+ +E E+ LRRRNMTE+ER+ ED L K +KAK KFMQKY+HKG FY+DE SV+ DDVR+R TLEDKF+K +P+VMQVKNFGRSGQTK+THLA++DT+ S W++ + K ++K+SG+ DI+G+ +R++K
Sbjct: 230 DSGAGEALLKPVFVPKKARETLKRQEXXXXXXXXXXQLEAARLESRXXXXXXLVAEEIRREQE--EGDAGGGATDVEMPDDTDGVDPAQEYRDWELREMRRIKRDRDRKEQKRQEAEEILRRRNMTEEERQAEDRKLKKDVRTEKAKWKFMQKYHHKGVFYVDETSVKDKDDVRRRDVSGATLEDKFNKEMLPKVMQVKNFGRSGQTKYTHLADQDTSHRDSLWARNDSIREKFKNKLSGVRDIEGSLKRRKK 480
BLAST of mRNA_P-canaliculata_contig10142.233.1 vs. uniprot
Match: UPI00053C8333 (microfibrillar-associated protein 1-like n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C8333) HSP 1 Score: 192 bits (489), Expect = 7.490e-51 Identity = 118/245 (48.16%), Postives = 158/245 (64.49%), Query Frame = 1 Query: 565 DEADGEQVLKPVFVPKARRETAAERARLEQEAKYKEHRRNIDKDIRIRETRQLAAQVVRREEEMTENHLGDNDSEGDAPDDDDDLDEELAFEEWKIRELNRVRREKDEREKAIKEREDTLRRRNMTEDERRLEDMMLGKHAVKDKAKIKFMQKYYHKGAFYM-DEDSVETP---DDVRKRSYHEPTLEDKFDKSQMPRVMQVKNFGRSGQTKWTHLANEDTTQWGSPWSQESHLATKMQHKMSGI 1287
+E G ++KPVFVPKA R+T AER RLE E + E +IR +ET+Q+ + VR++EE+ +N D + D D DD+++E +E WK RE+ R++RE+D RE +KERE+ + RNMTE ERR + K A K K KFMQKYYHKGAF+ D D V DD+ +R + PT ED+ D+S +P+VMQVK+FGRSG+TKWTHL NEDTT W SPW+ L K KM+G+
Sbjct: 173 EEMPGMAMVKPVFVPKAERDTIAERERLEAEERALEELAKRKLEIRKKETKQIVVEEVRKDEEIQKNMEMDEANIADV-DTDDEMNEAEEYEVWKTREIARIKRERDAREAMVKEREEIEKLRNMTEQERREWERKNPKPAGPQKQKWKFMQKYYHKGAFFQSDVDDVAASVGTDDIFQRDFSAPTGEDRLDRSILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNSPWTSNDPLRDKYNSKMAGM 416
BLAST of mRNA_P-canaliculata_contig10142.233.1 vs. uniprot
Match: A0A485L535_9STRA (Aste57867_15717 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L535_9STRA) HSP 1 Score: 191 bits (486), Expect = 2.270e-50 Identity = 117/260 (45.00%), Postives = 179/260 (68.85%), Query Frame = 1 Query: 565 DEADGEQVLKPVFVPKARRETAAERARLEQEAKYKEHR------RNIDKDIRIRETRQLAAQVVRREEEMTENHLGDNDSEGDAPDDDDDLDEELAFEEWKIRELNRVRREKDEREKAIKEREDTLRRRNMTEDERRLEDMMLGKHAVKDKAKIKFMQKYYHKGAFYMDEDSVETPDDVRKRSYHEPTLEDKFDKSQMPRVMQVKNFGRSGQTKWTHLANEDTTQWGSPWSQESHLATKMQHKMSGIGDID-GAFRRKRK 1323
DE++GEQ+LKP+FVPK R+T E+ E++ K E R R ++K E+R++ A+V++REE + HL + ++ + PDD D + E +EW++RE+ R++R++D RE ++ ++TLRRRNMT++ER ED+ LGK K+K K KF+QKYYHKGAFY+D+ SV+T DVR+R EPTLEDK ++ +P VMQVKNFG+SG+TK+THL ++DTT + +P Q+ L + K+SG+ I+ ++R+R+
Sbjct: 189 DESEGEQMLKPIFVPKKARDTIREQ---EEKLKAMEERDQEAAKRAVEKKA---ESRKMVAEVLQREEAEAQ-HLMEVATDSEMPDDSDGVHPEQERQEWELREMRRLKRDRDARETRERDIQETLRRRNMTDEEREKEDLALGKLQEKEKKKWKFLQKYYHKGAFYVDDKSVKTDTDVRRRDADEPTLEDKLNRENLPTVMQVKNFGKSGRTKYTHLTDQDTTNFINPL-QDDELRAQYATKLSGLKPINPNPYKRQRR 440
BLAST of mRNA_P-canaliculata_contig10142.233.1 vs. uniprot
Match: D5A929_PICSI (MFAP1 domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5A929_PICSI) HSP 1 Score: 181 bits (458), Expect = 1.580e-48 Identity = 110/238 (46.22%), Postives = 154/238 (64.71%), Query Frame = 1 Query: 586 VLKPVFVPKARRETAAERARLEQEAKYKEHRRNIDKDIRIRETRQLAAQVVRREEEMTENHLGDNDSEGDAPDDDDDLDEELAFEEWKIRELNRVRREKDEREKAIKEREDTLRRRNMTEDERRLEDMMLGKHAVKDKAKIKFMQKYYHKGAFYMD--EDSVETP--DDVRKRSYHEPTLEDKFDKSQMPRVMQVKNFGRSGQTKWTHLANEDTTQWGSPWSQESHLATKMQHKMSGI 1287
++KPVFVPKA R+T AER RLE E K E + R ET+Q+ + +R++EE+ +N + + G D DD+++E +E WK RE+ R++R++D+RE +KE+E+ + RNM EDERR + K + K K KFMQKY+HKGAF+ +D V T DD+ KR + PT EDK DK+ +P+VMQVK+FGRSG+TKWTHL EDTT W +PW+ L K KM+G+
Sbjct: 1 MIKPVFVPKAERDTIAERERLEAEEKALEEAMKKRLEERKVETKQILVEEIRKDEEIQKNLEAEGN--GGEIDTDDEINEAEEYEAWKAREIARIKRDRDDREAMLKEKEEIEKVRNMAEDERREWERKNPKSLPQPKQKWKFMQKYFHKGAFFQTPADDHVATAGEDDIFKRDFSSPTGEDKMDKTILPKVMQVKHFGRSGRTKWTHLVAEDTTDWNNPWTYNDPLRAKYNTKMAGM 236
BLAST of mRNA_P-canaliculata_contig10142.233.1 vs. uniprot
Match: A0A0K9NTB2_ZOSMR (Microfibrillar-associated protein 1 n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NTB2_ZOSMR) HSP 1 Score: 186 bits (471), Expect = 2.540e-48 Identity = 115/246 (46.75%), Postives = 162/246 (65.85%), Query Frame = 1 Query: 565 DEADGEQVLKPVFVPKARRETAAERARLEQEAKYKEHRRNIDKDIRIRETRQLAAQVVRREEEMTENHLGDNDSEGDAPDDDDDLDEELAFEEWKIRELNRVRREKDEREKAIKEREDTLRRRNMTEDERRLEDMMLGKHAV-KDKAKIKFMQKYYHKGAFYM----DEDSVETPDDVRKRSYHEPTLEDKFDKSQMPRVMQVKNFGRSGQTKWTHLANEDTTQWGSPWSQESHLATKMQHKMSGI 1287
DE G ++KPVFVPK+ R+T AER R+E E K E R + R ET+Q+ + +R++E++ +N D D+ GD + DDDL+E +E WK RE+ R++R+++ER+ +KE+E+ R RNMTE+ERR + K ++K K +FMQKY+HKGAFY D + V DD+ +R + PT EDK DKS +P+VMQVK+FGRSG+TKWTHL NEDTT W +PW+ L K KM+G+
Sbjct: 173 DEQMGIAMVKPVFVPKSERDTVAERERIEAEEKALEDRIKKRLEERKIETKQIVVEEIRKDEQIQKNLEVDADA-GDV-ETDDDLNEAEEYEAWKSREIARIKRDREERDARLKEKEEIERVRNMTEEERREWERKNPKTLPPQNKQKWRFMQKYFHKGAFYQTEADDRNGVPESDDIFRRDFSAPTGEDKMDKSILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNNPWTSTGPLQDKYHAKMAGM 416
BLAST of mRNA_P-canaliculata_contig10142.233.1 vs. uniprot
Match: A0A3M6V8B9_9STRA (MFAP1 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V8B9_9STRA) HSP 1 Score: 187 bits (474), Expect = 3.350e-48 Identity = 114/275 (41.45%), Postives = 168/275 (61.09%), Query Frame = 1 Query: 565 DEADGEQVLKPVFVPKARRETAAERARLEQEAKYKEHRRNIDKDIRIRETRQLAAQVVRREEEMTENHLGDNDSEGDAPDDDDDLDEELAFEEWKIRELNRVRREKDEREKAIKEREDTLRRRNMTEDERRLEDMM----------------------LGKHAVKDKAKIKFMQKYYHKGAFYMDEDSVETPDDVRKRSYHEPTLEDKFDKSQMPRVMQVKNFGRSGQTKWTHLANEDTTQWGSPWSQESHLATKMQHKMSGIGDIDGAFRRKRK 1323
D GE+ +KPVFVPK R T + L E + + +R+L A+ +RE+ + GD D++ + PDD D LD + +W++RE+ R++R++D +E+ +KE E+ LRRRNMT++ER ED L K+ K K K+KFMQKYYHKGAFY+D+DSV + +DVRKR E TLEDKF+K +P VMQVKNFGR+G+TK+THLA++DT+ S W+++ + K + ++ G+ DIDG+ +R+RK
Sbjct: 221 DSEPGEEFMKPVFVPKRARGTIKRQEELAAEEERRXXXXXXXXXXXXXXSRRLVAEDTQREQNGA--NKGD-DTDVEMPDDTDGLDPVQEYRDWELREMRRIKRDRDRKEQRVKEEEEALRRRNMTQEERTAEDAYVLLCNNEEADCDLLRYFLTVSKLKKNEPKQKHKLKFMQKYYHKGAFYVDDDSVGSKNDVRKRDATEATLEDKFNKEMLPTVMQVKNFGRAGRTKYTHLADQDTSSRDSLWARDDGIREKYKSRLGGMKDIDGSTKRRRK 492 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10142.233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10142.233.1 >prot_P-canaliculata_contig10142.233.1 ID=prot_P-canaliculata_contig10142.233.1|Name=mRNA_P-canaliculata_contig10142.233.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=199bp MTENHLGDNDSEGDAPDDDDDLDEELAFEEWKIRELNRVRREKDEREKAIback to top mRNA from alignment at P-canaliculata_contig10142:1490..7252- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10142.233.1 ID=mRNA_P-canaliculata_contig10142.233.1|Name=mRNA_P-canaliculata_contig10142.233.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=5763bp|location=Sequence derived from alignment at P-canaliculata_contig10142:1490..7252- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10142:1490..7252- >mRNA_P-canaliculata_contig10142.233.1 ID=mRNA_P-canaliculata_contig10142.233.1|Name=mRNA_P-canaliculata_contig10142.233.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1194bp|location=Sequence derived from alignment at P-canaliculata_contig10142:1490..7252- (Pelvetia canaliculata dioecious)back to top |