mRNA_P-canaliculata_contig101361.226.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig101361.226.1 vs. uniprot
Match: A0A518EZB5_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EZB5_9BACT) HSP 1 Score: 218 bits (556), Expect = 3.430e-69 Identity = 101/182 (55.49%), Postives = 137/182 (75.27%), Query Frame = 1 Query: 1 MEASAPRRPAVPAYSVTALMQAPEQKLGETLSLAVQFHSEVEEWNPFLSRFDPAEFRCVKVWADEQWLWIKEEYESPATRLFVRRGTIAEAMMDGAKAHDRLRVYAVVREMHAGEAWIEVTDAERTEEQTPEGTVLHAISAMKLIDRDGWALAVSELDRALRPTLPGHVRRELEQIRDQCQA 546
+EA+AP P +P YS++AL+ PE+KLGE + Q H E+++W+PFL+RF ++RC+ WADEQWLWIKEE+++PA FVRRG+ + + + HDRL++ VRE+HAG WIE+T A TE QTPEGT+LHAI A+ +I+R+GWALA SEL+RAL+P LPGHVRREL I +QC+A
Sbjct: 28 VEAAAPVPPVIPTYSISALLYQPERKLGEEHRVFAQLHGEIDDWHPFLTRFHSGDYRCLTFWADEQWLWIKEEFDAPAVDFFVRRGSEVDRRLRQCRKHDRLQLDLEVREVHAGRTWIEITGATLTEAQTPEGTILHAIRALDMIEREGWALAASELERALKPDLPGHVRRELRTILEQCRA 209
BLAST of mRNA_P-canaliculata_contig101361.226.1 vs. uniprot
Match: A0A7C7YUK0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C7YUK0_9BACT) HSP 1 Score: 114 bits (285), Expect = 2.940e-28 Identity = 55/150 (36.67%), Postives = 85/150 (56.67%), Query Frame = 1 Query: 79 LGETLSLAVQFHSEVEEWNPFLSRFDPAEFRCVKVWADEQWLWIKEEYESPATRLFVRRGTIAEAMMDGAKAHDRLRVYAVVREMHAGEAWIEVTDAERTEEQTPEGTVLHAISAMKLIDRDGWALAVSELDRALRPTLPGHVRRELEQI 528
LG + + VQ HS E WNPFL+RF P EF C++ W+D Q+ W++ ++E P R+F RRG+ AE + AK + R + VR + G+ W+EV+ + G VLHA ++ +++ W A E +RA LP R EL+++
Sbjct: 61 LGNRVQITVQMHSYQESWNPFLTRFGPREFVCLRGWSDAQFPWLRGDFEQPLMRVFARRGSAAEWALADAKRYQRFELTCAVRAVFGGQPWLEVSAVKPLARNLGTGCVLHAARGLEFMEKGLWQAARLEFERATAGALPRVAREELQRL 210
BLAST of mRNA_P-canaliculata_contig101361.226.1 vs. uniprot
Match: A0A7Y4WIV0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7Y4WIV0_9BACT) HSP 1 Score: 111 bits (278), Expect = 3.750e-27 Identity = 64/164 (39.02%), Postives = 96/164 (58.54%), Query Frame = 1 Query: 43 SVTALMQAPEQKLGETLSLAVQFHSEVEEWNPFLSRFDPAEFRCVKVWADEQWLWIKEEYESPATRLFVRRGTIAEAMMDGAKAHDRLRVYAVVREMHAGEAWIEVTDAERTEEQTPEGTVLHAISAMKLIDRDGWALAVSELDRALRPTLPGH-VRRELEQIR 531
+++AL P + LG + +QF + VE+WNP+LSRF+PA + ++VW DE W + +E+PA RLFVRRG E ++ A+ + R V A VRE GEAW+E+ + E + EGT+LH A +L + LA+ + +RA L H + LE+IR
Sbjct: 39 TLSALRAQPGRYLGLEVRFVLQFRALVEDWNPYLSRFEPARWLALEVWPDEALNWERAAFETPARRLFVRRGGGFEPLVRRARIYQRFEVRARVREAFLGEAWLELLELVPLEGEVGEGTILHVTRARELAAEGQFDLALDQYERARSAPLSPHALAAVLEEIR 202
BLAST of mRNA_P-canaliculata_contig101361.226.1 vs. uniprot
Match: A0A518CW80_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518CW80_9BACT) HSP 1 Score: 96.7 bits (239), Expect = 2.010e-21 Identity = 54/146 (36.99%), Postives = 79/146 (54.11%), Query Frame = 1 Query: 130 WNPFLSRFDPAEFRCVKVWADEQWLWIKEEYESPATRLFVRRGTIAEAMMDGAKAHDRLRVYAVVREMHAGEAWIEVTDAERTEEQTPEGTVLHAISAMKLIDRDGWALAVSELDRALRPTLPGHVRRELEQIRDQCQATIDAQNA 567
W+P L+RFD A + ++ W+D+ LW + +E+PA LF RRGT A + A +DR+ V VR++ AGE WIE+ R E TV HA A +L LA SE++RAL +P H R L I ++ + D ++
Sbjct: 66 WDPLLTRFDGATWLRLEAWSDDAALWERASFENPAPYLFARRGTGAAQALLAASPYDRIEVEGAVRQVFAGEPWIEIWAVHRKGVALTEATVFHAARAERLEREGNLELARSEIERALAAPMPEHHRAPLLAIAERLEVPADGSDS 211 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101361.226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101361.226.1 >prot_P-canaliculata_contig101361.226.1 ID=prot_P-canaliculata_contig101361.226.1|Name=mRNA_P-canaliculata_contig101361.226.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=191bp MEASAPRRPAVPAYSVTALMQAPEQKLGETLSLAVQFHSEVEEWNPFLSRback to top mRNA from alignment at P-canaliculata_contig101361:210..782- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig101361.226.1 ID=mRNA_P-canaliculata_contig101361.226.1|Name=mRNA_P-canaliculata_contig101361.226.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=573bp|location=Sequence derived from alignment at P-canaliculata_contig101361:210..782- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig101361:210..782- >mRNA_P-canaliculata_contig101361.226.1 ID=mRNA_P-canaliculata_contig101361.226.1|Name=mRNA_P-canaliculata_contig101361.226.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at P-canaliculata_contig101361:210..782- (Pelvetia canaliculata dioecious)back to top |