Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 2215 |
| Cds size | 1683 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815587.1401222-UTR-P-canaliculata_contig10136:9083..9461 | 1622815587.1401222-UTR-P-canaliculata_contig10136:9083..9461 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10136 9084..9461 - |
| 1693494152.3381422-UTR-P-canaliculata_contig10136:9083..9461 | 1693494152.3381422-UTR-P-canaliculata_contig10136:9083..9461 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10136 9084..9461 - |
| 1622815587.1568525-UTR-P-canaliculata_contig10136:9761..9765 | 1622815587.1568525-UTR-P-canaliculata_contig10136:9761..9765 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10136 9762..9765 - |
| 1693494152.34599-UTR-P-canaliculata_contig10136:9761..9765 | 1693494152.34599-UTR-P-canaliculata_contig10136:9761..9765 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10136 9762..9765 - |
| 1622815587.1890075-UTR-P-canaliculata_contig10136:11448..11598 | 1622815587.1890075-UTR-P-canaliculata_contig10136:11448..11598 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10136 11449..11598 - |
| 1693494152.3730876-UTR-P-canaliculata_contig10136:11448..11598 | 1693494152.3730876-UTR-P-canaliculata_contig10136:11448..11598 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10136 11449..11598 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815587.1763544-CDS-P-canaliculata_contig10136:9765..11448 | 1622815587.1763544-CDS-P-canaliculata_contig10136:9765..11448 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10136 9766..11448 - |
| 1693494152.3596714-CDS-P-canaliculata_contig10136:9765..11448 | 1693494152.3596714-CDS-P-canaliculata_contig10136:9765..11448 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10136 9766..11448 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10136.225.1 >prot_P-canaliculata_contig10136.225.1 ID=prot_P-canaliculata_contig10136.225.1|Name=mRNA_P-canaliculata_contig10136.225.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=561bp
MVDVCSKKCSTEGCGNLASFGVPGTRTAEYCAEHAPEGMVDVKSRKCRTE
GCGKIPYFGVTGTKFGEYCAQHALEGMVDVKSRKCRIASCGKIPFFGVAG
TKTGEYCAQHALVGMVDVKSRKCKTASCGKRPFFGVAGTKTGEYCAQHAL
EGMVNIKSRKCRTEGCGKLPSFGVAGTKTVEYCAQHALEGMVNVHNRKCG
TEDCGKLPSFGAAGTKTREYCAQHAPEGMVNVKSRQCRIEGCGMLPCFGV
AGTKTGEYCAQHALEGMVNVKSKMCRTASCGKQPFFGVAGAKSGEYCAHH
ALEGMVDVKSRKCRTEGCGKFPSFGVAGTKTREYCAQHALEGMVNIHNRK
CGTEDCGKLPSFGAAGTKTREYCAQHAPEGMVNVKSKQWRIEGYGEIPSF
EVTGTKTAEYCAKYSLDGMVQVKSRKCRTEGCGKIPSYGVAGTKTAEYCA
QHTRLQWSVEGLREREVCPHHSGKEAIAIVIPSVAKRTSVCPPPTATSRP
SGPSPDSRKRVRYPETTSTASKRAIAREPTAGGVTMPDIDGQKSPAKRNP
SVKMEVQLSL* back to topmRNA from alignment at P-canaliculata_contig10136:9084..11598- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig10136.225.1 ID=mRNA_P-canaliculata_contig10136.225.1|Name=mRNA_P-canaliculata_contig10136.225.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2515bp|location=Sequence derived from alignment at P-canaliculata_contig10136:9084..11598- (Pelvetia canaliculata dioecious)
GCTGCGGGCAAAACGATGCACCGCACGTACCAGAAGTGATGATCAACATC
TTCAGCAGCAAGTTTAAAATCAAAATTTTCACCAAGTGCGCATCGTTTGG
GGTGGCAGGTACCACATGCGAAGTACTATGAGCAGCACGCTCTTGGCGGG
ATGGTCGACGTCTGTAGCAAAAAGTGCAGTACTGAAGGCTGCGGCAATCT
AGCGTCTTTCGGAGTTCCGGGTACAAGAACGGCGGAGTACTGTGCAGAGC
ACGCACCGGAGGGGATGGTCGACGTCAAGAGCAGAAAGTGCAGAACCGAA
GGCTGCGGCAAGATACCGTATTTTGGAGTTACAGGTACGAAATTTGGGGA
GTACTGTGCACAGCATGCACTGGAGGGGATGGTCGACGTCAAGAGCAGAA
AGTGCAGAATCGCAAGCTGCGGCAAGATACCGTTTTTCGGAGTTGCGGGT
ACGAAAACTGGGGAGTACTGTGCACAGCACGCACTGGTGGGGATGGTCGA
CGTCAAGAGCAGAAAGTGCAAAACCGCAAGCTGCGGCAAGCGTCCGTTTT
TTGGAGTTGCAGGTACGAAAACTGGGGAGTACTGTGCACAACACGCACTG
GAGGGGATGGTCAACATCAAGAGTAGAAAGTGCAGAACCGAAGGGTGCGG
CAAGCTTCCATCTTTCGGAGTTGCAGGTACAAAAACGGTGGAGTACTGTG
CACAGCATGCACTAGAGGGGATGGTCAATGTTCACAACAGAAAGTGCGGA
ACCGAAGACTGCGGCAAGCTACCGTCTTTCGGAGCCGCAGGTACCAAAAC
TAGAGAGTACTGTGCACAACACGCACCGGAGGGGATGGTCAACGTCAAGA
GCAGACAGTGCAGAATCGAAGGCTGTGGCATGCTTCCATGTTTCGGAGTT
GCAGGTACGAAAACTGGGGAGTACTGTGCACAGCACGCACTGGAAGGGAT
GGTAAACGTCAAGAGCAAAATGTGCAGAACCGCAAGCTGCGGCAAGCAAC
CGTTTTTCGGAGTTGCAGGTGCGAAATCTGGGGAGTACTGTGCCCATCAC
GCACTGGAGGGGATGGTCGACGTCAAGAGCAGAAAGTGCAGAACCGAAGG
GTGCGGCAAGTTTCCATCGTTCGGAGTTGCAGGTACAAAAACTAGGGAGT
ACTGTGCACAGCATGCACTGGAGGGGATGGTCAACATTCACAACAGAAAG
TGCGGAACCGAAGACTGCGGCAAGCTACCGTCGTTCGGAGCCGCAGGTAC
CAAAACTAGGGAGTACTGTGCACAGCACGCACCGGAGGGGATGGTCAACG
TCAAGAGCAAACAGTGGAGAATCGAAGGGTATGGCGAGATACCGTCTTTC
GAGGTTACAGGTACGAAAACAGCGGAATACTGTGCAAAGTACTCCTTGGA
CGGAATGGTGCAGGTCAAAAGCAGAAAGTGTAGAACCGAAGGCTGCGGTA
AAATCCCATCGTACGGAGTTGCAGGTACGAAAACGGCGGAGTACTGTGCG
CAACACACCAGACTACAATGGAGTGTCGAAGGATTAAGGGAGCGAGAGGT
TTGCCCACACCACTCCGGGAAAGAAGCCATTGCTATCGTAATTCCGAGTG
TTGCCAAACGTACGAGCGTTTGTCCTCCTCCCACCGCGACGAGTAGGCCG
TCGGGTCCTAGTCCGGATTCTCGTAAGCGAGTACGATACCCAGAAACTAC
GTCTACGGCGTCAAAGCGAGCTATTGCACGAGAGCCGACTGCAGGAGGTG
TGACTATGCCGGATATTGACGGCCAAAAATCTCCCGCCAAACGAAATCCT
TCTGTGAAGATGGAGGTGCAGCTCTCCTTGTAGCCAGGTACACTACACGT
GACTACAACCCTTATATGCTTCATATAAGTTTTTTTACTCGCGTAATACG
ATTCCGGTGACCGGAGTTAATTAGTTCGCTTTTTATTTTGTGCATATTGA
ATGTGTAACCTGTCTCGTTCATGAATCTTGCGCTGTGTTTCGTCACAATG
CTGTGTGTTCAACTCAAGGGCCCCTGTTCCTCTTATACCACCAAGATCTT
TCACCCGCAGCCATTCATACATGAAACACGTTACTCGCGCTTACCCCCAC
TATCTTGTTCTACTGCTCTCCCGACTTTGGAACTCAGGTGCTGCTATCAA
GATCGTGGTCATGATATTTACTGTTAGGTCTGGTGAGGGTCTAACCGTGT
GACCTGGGTAATAAGTCGTGCATTTTTCTTGGTGCTCTATTATCTAGCGG
GGATACTATCAGCTGATGATGTGTGCATATTCGAGTATTTAATCATTGCA
GGTGCCGGTATCATCTCATGGACCCTCCTGTGCGTGGTACCTTACCGCAG
CTTCCTGACAACAACACCGGTTCAGACAGCAACACATACACAAAACATCC
TTCCAGCCTACCCTAGTGGAAGGAAATATCGAAGCCCAAACAACAAAACT
AAAGTCTAAGCCAAAACCCATGCACTCATAAAAAAAAAGCTGAAAACAAT
GCCTAAAAATAGCCC back to topCoding sequence (CDS) from alignment at P-canaliculata_contig10136:9084..11598- >mRNA_P-canaliculata_contig10136.225.1 ID=mRNA_P-canaliculata_contig10136.225.1|Name=mRNA_P-canaliculata_contig10136.225.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=3366bp|location=Sequence derived from alignment at P-canaliculata_contig10136:9084..11598- (Pelvetia canaliculata dioecious)
ATGGTCGACGTCTGTAGCAAAAAGTGCAGTACTGAAGGCTGCGGCAATCT
AGCGTCTTTCGGAGTTCCGGGTACAAGAACGGCGGAGTACTGTGCAGAGC
ACGCACCGGAGGGGATGGTCGACGTCAAGAGCAGAAAGTGCAGAACCGAA
GGCTGCGGCAAGATACCGTATTTTGGAGTTACAGGTACGAAATTTGGGGA
GTACTGTGCACAGCATGCACTGGAGGGGATGGTCGACGTCAAGAGCAGAA
AGTGCAGAATCGCAAGCTGCGGCAAGATACCGTTTTTCGGAGTTGCGGGT
ACGAAAACTGGGGAGTACTGTGCACAGCACGCACTGGTGGGGATGGTCGA
CGTCAAGAGCAGAAAGTGCAAAACCGCAAGCTGCGGCAAGCGTCCGTTTT
TTGGAGTTGCAGGTACGAAAACTGGGGAGTACTGTGCACAACACGCACTG
GAGGGGATGGTCAACATCAAGAGTAGAAAGTGCAGAACCGAAGGGTGCGG
CAAGCTTCCATCTTTCGGAGTTGCAGGTACAAAAACGGTGGAGTACTGTG
CACAGCATGCACTAGAGGGGATGGTCAATGTTCACAACAGAAAGTGCGGA
ACCGAAGACTGCGGCAAGCTACCGTCTTTCGGAGCCGCAGGTACCAAAAC
TAGAGAGTACTGTGCACAACACGCACCGGAGGGGATGGTCAACGTCAAGA
GCAGACAGTGCAGAATCGAAGGCTGTGGCATGCTTCCATGTTTCGGAGTT
GCAGGTACGAAAACTGGGGAGTACTGTGCACAGCACGCACTGGAAGGGAT
GGTAAACGTCAAGAGCAAAATGTGCAGAACCGCAAGCTGCGGCAAGCAAC
CGTTTTTCGGAGTTGCAGGTGCGAAATCTGGGGAGTACTGTGCCCATCAC
GCACTGGAGGGGATGGTCGACGTCAAGAGCAGAAAGTGCAGAACCGAAGG
GTGCGGCAAGTTTCCATCGTTCGGAGTTGCAGGTACAAAAACTAGGGAGT
ACTGTGCACAGCATGCACTGGAGGGGATGGTCAACATTCACAACAGAAAG
TGCGGAACCGAAGACTGCGGCAAGCTACCGTCGTTCGGAGCCGCAGGTAC
CAAAACTAGGGAGTACTGTGCACAGCACGCACCGGAGGGGATGGTCAACG
TCAAGAGCAAACAGTGGAGAATCGAAGGGTATGGCGAGATACCGTCTTTC
GAGGTTACAGGTACGAAAACAGCGGAATACTGTGCAAAGTACTCCTTGGA
CGGAATGGTGCAGGTCAAAAGCAGAAAGTGTAGAACCGAAGGCTGCGGTA
AAATCCCATCGTACGGAGTTGCAGGTACGAAAACGGCGGAGTACTGTGCG
CAACACACCAGACTACAATGGAGTGTCGAAGGATTAAGGGAGCGAGAGGT
TTGCCCACACCACTCCGGGAAAGAAGCCATTGCTATCGTAATTCCGAGTG
TTGCCAAACGTACGAGCGTTTGTCCTCCTCCCACCGCGACGAGTAGGCCG
TCGGGTCCTAGTCCGGATTCTCGTAAGCGAGTACGATACCCAGAAACTAC
GTCTACGGCGTCAAAGCGAGCTATTGCACGAGAGCCGACTGCAGGAGGTG
TGACTATGCCGGATATTGACGGCCAAAAATCTCCCGCCAAACGAAATCCT
TCTGTGAAGATGGAGGTGCAGCTCTCCTTGTAGATGGTCGACGTCTGTAG
CAAAAAGTGCAGTACTGAAGGCTGCGGCAATCTAGCGTCTTTCGGAGTTC
CGGGTACAAGAACGGCGGAGTACTGTGCAGAGCACGCACCGGAGGGGATG
GTCGACGTCAAGAGCAGAAAGTGCAGAACCGAAGGCTGCGGCAAGATACC
GTATTTTGGAGTTACAGGTACGAAATTTGGGGAGTACTGTGCACAGCATG
CACTGGAGGGGATGGTCGACGTCAAGAGCAGAAAGTGCAGAATCGCAAGC
TGCGGCAAGATACCGTTTTTCGGAGTTGCGGGTACGAAAACTGGGGAGTA
CTGTGCACAGCACGCACTGGTGGGGATGGTCGACGTCAAGAGCAGAAAGT
GCAAAACCGCAAGCTGCGGCAAGCGTCCGTTTTTTGGAGTTGCAGGTACG
AAAACTGGGGAGTACTGTGCACAACACGCACTGGAGGGGATGGTCAACAT
CAAGAGTAGAAAGTGCAGAACCGAAGGGTGCGGCAAGCTTCCATCTTTCG
GAGTTGCAGGTACAAAAACGGTGGAGTACTGTGCACAGCATGCACTAGAG
GGGATGGTCAATGTTCACAACAGAAAGTGCGGAACCGAAGACTGCGGCAA
GCTACCGTCTTTCGGAGCCGCAGGTACCAAAACTAGAGAGTACTGTGCAC
AACACGCACCGGAGGGGATGGTCAACGTCAAGAGCAGACAGTGCAGAATC
GAAGGCTGTGGCATGCTTCCATGTTTCGGAGTTGCAGGTACGAAAACTGG
GGAGTACTGTGCACAGCACGCACTGGAAGGGATGGTAAACGTCAAGAGCA
AAATGTGCAGAACCGCAAGCTGCGGCAAGCAACCGTTTTTCGGAGTTGCA
GGTGCGAAATCTGGGGAGTACTGTGCCCATCACGCACTGGAGGGGATGGT
CGACGTCAAGAGCAGAAAGTGCAGAACCGAAGGGTGCGGCAAGTTTCCAT
CGTTCGGAGTTGCAGGTACAAAAACTAGGGAGTACTGTGCACAGCATGCA
CTGGAGGGGATGGTCAACATTCACAACAGAAAGTGCGGAACCGAAGACTG
CGGCAAGCTACCGTCGTTCGGAGCCGCAGGTACCAAAACTAGGGAGTACT
GTGCACAGCACGCACCGGAGGGGATGGTCAACGTCAAGAGCAAACAGTGG
AGAATCGAAGGGTATGGCGAGATACCGTCTTTCGAGGTTACAGGTACGAA
AACAGCGGAATACTGTGCAAAGTACTCCTTGGACGGAATGGTGCAGGTCA
AAAGCAGAAAGTGTAGAACCGAAGGCTGCGGTAAAATCCCATCGTACGGA
GTTGCAGGTACGAAAACGGCGGAGTACTGTGCGCAACACACCAGACTACA
ATGGAGTGTCGAAGGATTAAGGGAGCGAGAGGTTTGCCCACACCACTCCG
GGAAAGAAGCCATTGCTATCGTAATTCCGAGTGTTGCCAAACGTACGAGC
GTTTGTCCTCCTCCCACCGCGACGAGTAGGCCGTCGGGTCCTAGTCCGGA
TTCTCGTAAGCGAGTACGATACCCAGAAACTACGTCTACGGCGTCAAAGC
GAGCTATTGCACGAGAGCCGACTGCAGGAGGTGTGACTATGCCGGATATT
GACGGCCAAAAATCTCCCGCCAAACGAAATCCTTCTGTGAAGATGGAGGT
GCAGCTCTCCTTGTAG back to top
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