mRNA_P-canaliculata_contig10136.225.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig10136	contig	P-canaliculata_contig10136:9084..11598 -

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig10136.225.1	prot_P-canaliculata_contig10136.225.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig10136 9766..11448 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815587.1401222-UTR-P-canaliculata_contig10136:9083..9461	1622815587.1401222-UTR-P-canaliculata_contig10136:9083..9461	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig10136 9084..9461 -
1693494152.3381422-UTR-P-canaliculata_contig10136:9083..9461	1693494152.3381422-UTR-P-canaliculata_contig10136:9083..9461	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig10136 9084..9461 -
1622815587.1568525-UTR-P-canaliculata_contig10136:9761..9765	1622815587.1568525-UTR-P-canaliculata_contig10136:9761..9765	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig10136 9762..9765 -
1693494152.34599-UTR-P-canaliculata_contig10136:9761..9765	1693494152.34599-UTR-P-canaliculata_contig10136:9761..9765	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig10136 9762..9765 -
1622815587.1890075-UTR-P-canaliculata_contig10136:11448..11598	1622815587.1890075-UTR-P-canaliculata_contig10136:11448..11598	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig10136 11449..11598 -
1693494152.3730876-UTR-P-canaliculata_contig10136:11448..11598	1693494152.3730876-UTR-P-canaliculata_contig10136:11448..11598	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig10136 11449..11598 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815587.1763544-CDS-P-canaliculata_contig10136:9765..11448	1622815587.1763544-CDS-P-canaliculata_contig10136:9765..11448	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig10136 9766..11448 -
1693494152.3596714-CDS-P-canaliculata_contig10136:9765..11448	1693494152.3596714-CDS-P-canaliculata_contig10136:9765..11448	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig10136 9766..11448 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-canaliculata_contig10136:9084..11598-
coding sequence from alignment at P-canaliculata_contig10136:9084..11598-

protein sequence of mRNA_P-canaliculata_contig10136.225.1

>prot_P-canaliculata_contig10136.225.1 ID=prot_P-canaliculata_contig10136.225.1|Name=mRNA_P-canaliculata_contig10136.225.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=561bp
MVDVCSKKCSTEGCGNLASFGVPGTRTAEYCAEHAPEGMVDVKSRKCRTE
GCGKIPYFGVTGTKFGEYCAQHALEGMVDVKSRKCRIASCGKIPFFGVAG
TKTGEYCAQHALVGMVDVKSRKCKTASCGKRPFFGVAGTKTGEYCAQHAL
EGMVNIKSRKCRTEGCGKLPSFGVAGTKTVEYCAQHALEGMVNVHNRKCG
TEDCGKLPSFGAAGTKTREYCAQHAPEGMVNVKSRQCRIEGCGMLPCFGV
AGTKTGEYCAQHALEGMVNVKSKMCRTASCGKQPFFGVAGAKSGEYCAHH
ALEGMVDVKSRKCRTEGCGKFPSFGVAGTKTREYCAQHALEGMVNIHNRK
CGTEDCGKLPSFGAAGTKTREYCAQHAPEGMVNVKSKQWRIEGYGEIPSF
EVTGTKTAEYCAKYSLDGMVQVKSRKCRTEGCGKIPSYGVAGTKTAEYCA
QHTRLQWSVEGLREREVCPHHSGKEAIAIVIPSVAKRTSVCPPPTATSRP
SGPSPDSRKRVRYPETTSTASKRAIAREPTAGGVTMPDIDGQKSPAKRNP
SVKMEVQLSL*

mRNA from alignment at P-canaliculata_contig10136:9084..11598-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-canaliculata_contig10136.225.1 ID=mRNA_P-canaliculata_contig10136.225.1|Name=mRNA_P-canaliculata_contig10136.225.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2515bp|location=Sequence derived from alignment at P-canaliculata_contig10136:9084..11598- (Pelvetia canaliculata dioecious)
GCTGCGGGCAAAACGATGCACCGCACGTACCAGAAGTGATGATCAACATC
TTCAGCAGCAAGTTTAAAATCAAAATTTTCACCAAGTGCGCATCGTTTGG
GGTGGCAGGTACCACATGCGAAGTACTATGAGCAGCACGCTCTTGGCGGG
ATGGTCGACGTCTGTAGCAAAAAGTGCAGTACTGAAGGCTGCGGCAATCT
AGCGTCTTTCGGAGTTCCGGGTACAAGAACGGCGGAGTACTGTGCAGAGC
ACGCACCGGAGGGGATGGTCGACGTCAAGAGCAGAAAGTGCAGAACCGAA
GGCTGCGGCAAGATACCGTATTTTGGAGTTACAGGTACGAAATTTGGGGA
GTACTGTGCACAGCATGCACTGGAGGGGATGGTCGACGTCAAGAGCAGAA
AGTGCAGAATCGCAAGCTGCGGCAAGATACCGTTTTTCGGAGTTGCGGGT
ACGAAAACTGGGGAGTACTGTGCACAGCACGCACTGGTGGGGATGGTCGA
CGTCAAGAGCAGAAAGTGCAAAACCGCAAGCTGCGGCAAGCGTCCGTTTT
TTGGAGTTGCAGGTACGAAAACTGGGGAGTACTGTGCACAACACGCACTG
GAGGGGATGGTCAACATCAAGAGTAGAAAGTGCAGAACCGAAGGGTGCGG
CAAGCTTCCATCTTTCGGAGTTGCAGGTACAAAAACGGTGGAGTACTGTG
CACAGCATGCACTAGAGGGGATGGTCAATGTTCACAACAGAAAGTGCGGA
ACCGAAGACTGCGGCAAGCTACCGTCTTTCGGAGCCGCAGGTACCAAAAC
TAGAGAGTACTGTGCACAACACGCACCGGAGGGGATGGTCAACGTCAAGA
GCAGACAGTGCAGAATCGAAGGCTGTGGCATGCTTCCATGTTTCGGAGTT
GCAGGTACGAAAACTGGGGAGTACTGTGCACAGCACGCACTGGAAGGGAT
GGTAAACGTCAAGAGCAAAATGTGCAGAACCGCAAGCTGCGGCAAGCAAC
CGTTTTTCGGAGTTGCAGGTGCGAAATCTGGGGAGTACTGTGCCCATCAC
GCACTGGAGGGGATGGTCGACGTCAAGAGCAGAAAGTGCAGAACCGAAGG
GTGCGGCAAGTTTCCATCGTTCGGAGTTGCAGGTACAAAAACTAGGGAGT
ACTGTGCACAGCATGCACTGGAGGGGATGGTCAACATTCACAACAGAAAG
TGCGGAACCGAAGACTGCGGCAAGCTACCGTCGTTCGGAGCCGCAGGTAC
CAAAACTAGGGAGTACTGTGCACAGCACGCACCGGAGGGGATGGTCAACG
TCAAGAGCAAACAGTGGAGAATCGAAGGGTATGGCGAGATACCGTCTTTC
GAGGTTACAGGTACGAAAACAGCGGAATACTGTGCAAAGTACTCCTTGGA
CGGAATGGTGCAGGTCAAAAGCAGAAAGTGTAGAACCGAAGGCTGCGGTA
AAATCCCATCGTACGGAGTTGCAGGTACGAAAACGGCGGAGTACTGTGCG
CAACACACCAGACTACAATGGAGTGTCGAAGGATTAAGGGAGCGAGAGGT
TTGCCCACACCACTCCGGGAAAGAAGCCATTGCTATCGTAATTCCGAGTG
TTGCCAAACGTACGAGCGTTTGTCCTCCTCCCACCGCGACGAGTAGGCCG
TCGGGTCCTAGTCCGGATTCTCGTAAGCGAGTACGATACCCAGAAACTAC
GTCTACGGCGTCAAAGCGAGCTATTGCACGAGAGCCGACTGCAGGAGGTG
TGACTATGCCGGATATTGACGGCCAAAAATCTCCCGCCAAACGAAATCCT
TCTGTGAAGATGGAGGTGCAGCTCTCCTTGTAGCCAGGTACACTACACGT
GACTACAACCCTTATATGCTTCATATAAGTTTTTTTACTCGCGTAATACG
ATTCCGGTGACCGGAGTTAATTAGTTCGCTTTTTATTTTGTGCATATTGA
ATGTGTAACCTGTCTCGTTCATGAATCTTGCGCTGTGTTTCGTCACAATG
CTGTGTGTTCAACTCAAGGGCCCCTGTTCCTCTTATACCACCAAGATCTT
TCACCCGCAGCCATTCATACATGAAACACGTTACTCGCGCTTACCCCCAC
TATCTTGTTCTACTGCTCTCCCGACTTTGGAACTCAGGTGCTGCTATCAA
GATCGTGGTCATGATATTTACTGTTAGGTCTGGTGAGGGTCTAACCGTGT
GACCTGGGTAATAAGTCGTGCATTTTTCTTGGTGCTCTATTATCTAGCGG
GGATACTATCAGCTGATGATGTGTGCATATTCGAGTATTTAATCATTGCA
GGTGCCGGTATCATCTCATGGACCCTCCTGTGCGTGGTACCTTACCGCAG
CTTCCTGACAACAACACCGGTTCAGACAGCAACACATACACAAAACATCC
TTCCAGCCTACCCTAGTGGAAGGAAATATCGAAGCCCAAACAACAAAACT
AAAGTCTAAGCCAAAACCCATGCACTCATAAAAAAAAAGCTGAAAACAAT
GCCTAAAAATAGCCC

Coding sequence (CDS) from alignment at P-canaliculata_contig10136:9084..11598-

>mRNA_P-canaliculata_contig10136.225.1 ID=mRNA_P-canaliculata_contig10136.225.1|Name=mRNA_P-canaliculata_contig10136.225.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=3366bp|location=Sequence derived from alignment at P-canaliculata_contig10136:9084..11598- (Pelvetia canaliculata dioecious)
ATGGTCGACGTCTGTAGCAAAAAGTGCAGTACTGAAGGCTGCGGCAATCT
AGCGTCTTTCGGAGTTCCGGGTACAAGAACGGCGGAGTACTGTGCAGAGC
ACGCACCGGAGGGGATGGTCGACGTCAAGAGCAGAAAGTGCAGAACCGAA
GGCTGCGGCAAGATACCGTATTTTGGAGTTACAGGTACGAAATTTGGGGA
GTACTGTGCACAGCATGCACTGGAGGGGATGGTCGACGTCAAGAGCAGAA
AGTGCAGAATCGCAAGCTGCGGCAAGATACCGTTTTTCGGAGTTGCGGGT
ACGAAAACTGGGGAGTACTGTGCACAGCACGCACTGGTGGGGATGGTCGA
CGTCAAGAGCAGAAAGTGCAAAACCGCAAGCTGCGGCAAGCGTCCGTTTT
TTGGAGTTGCAGGTACGAAAACTGGGGAGTACTGTGCACAACACGCACTG
GAGGGGATGGTCAACATCAAGAGTAGAAAGTGCAGAACCGAAGGGTGCGG
CAAGCTTCCATCTTTCGGAGTTGCAGGTACAAAAACGGTGGAGTACTGTG
CACAGCATGCACTAGAGGGGATGGTCAATGTTCACAACAGAAAGTGCGGA
ACCGAAGACTGCGGCAAGCTACCGTCTTTCGGAGCCGCAGGTACCAAAAC
TAGAGAGTACTGTGCACAACACGCACCGGAGGGGATGGTCAACGTCAAGA
GCAGACAGTGCAGAATCGAAGGCTGTGGCATGCTTCCATGTTTCGGAGTT
GCAGGTACGAAAACTGGGGAGTACTGTGCACAGCACGCACTGGAAGGGAT
GGTAAACGTCAAGAGCAAAATGTGCAGAACCGCAAGCTGCGGCAAGCAAC
CGTTTTTCGGAGTTGCAGGTGCGAAATCTGGGGAGTACTGTGCCCATCAC
GCACTGGAGGGGATGGTCGACGTCAAGAGCAGAAAGTGCAGAACCGAAGG
GTGCGGCAAGTTTCCATCGTTCGGAGTTGCAGGTACAAAAACTAGGGAGT
ACTGTGCACAGCATGCACTGGAGGGGATGGTCAACATTCACAACAGAAAG
TGCGGAACCGAAGACTGCGGCAAGCTACCGTCGTTCGGAGCCGCAGGTAC
CAAAACTAGGGAGTACTGTGCACAGCACGCACCGGAGGGGATGGTCAACG
TCAAGAGCAAACAGTGGAGAATCGAAGGGTATGGCGAGATACCGTCTTTC
GAGGTTACAGGTACGAAAACAGCGGAATACTGTGCAAAGTACTCCTTGGA
CGGAATGGTGCAGGTCAAAAGCAGAAAGTGTAGAACCGAAGGCTGCGGTA
AAATCCCATCGTACGGAGTTGCAGGTACGAAAACGGCGGAGTACTGTGCG
CAACACACCAGACTACAATGGAGTGTCGAAGGATTAAGGGAGCGAGAGGT
TTGCCCACACCACTCCGGGAAAGAAGCCATTGCTATCGTAATTCCGAGTG
TTGCCAAACGTACGAGCGTTTGTCCTCCTCCCACCGCGACGAGTAGGCCG
TCGGGTCCTAGTCCGGATTCTCGTAAGCGAGTACGATACCCAGAAACTAC
GTCTACGGCGTCAAAGCGAGCTATTGCACGAGAGCCGACTGCAGGAGGTG
TGACTATGCCGGATATTGACGGCCAAAAATCTCCCGCCAAACGAAATCCT
TCTGTGAAGATGGAGGTGCAGCTCTCCTTGTAGATGGTCGACGTCTGTAG
CAAAAAGTGCAGTACTGAAGGCTGCGGCAATCTAGCGTCTTTCGGAGTTC
CGGGTACAAGAACGGCGGAGTACTGTGCAGAGCACGCACCGGAGGGGATG
GTCGACGTCAAGAGCAGAAAGTGCAGAACCGAAGGCTGCGGCAAGATACC
GTATTTTGGAGTTACAGGTACGAAATTTGGGGAGTACTGTGCACAGCATG
CACTGGAGGGGATGGTCGACGTCAAGAGCAGAAAGTGCAGAATCGCAAGC
TGCGGCAAGATACCGTTTTTCGGAGTTGCGGGTACGAAAACTGGGGAGTA
CTGTGCACAGCACGCACTGGTGGGGATGGTCGACGTCAAGAGCAGAAAGT
GCAAAACCGCAAGCTGCGGCAAGCGTCCGTTTTTTGGAGTTGCAGGTACG
AAAACTGGGGAGTACTGTGCACAACACGCACTGGAGGGGATGGTCAACAT
CAAGAGTAGAAAGTGCAGAACCGAAGGGTGCGGCAAGCTTCCATCTTTCG
GAGTTGCAGGTACAAAAACGGTGGAGTACTGTGCACAGCATGCACTAGAG
GGGATGGTCAATGTTCACAACAGAAAGTGCGGAACCGAAGACTGCGGCAA
GCTACCGTCTTTCGGAGCCGCAGGTACCAAAACTAGAGAGTACTGTGCAC
AACACGCACCGGAGGGGATGGTCAACGTCAAGAGCAGACAGTGCAGAATC
GAAGGCTGTGGCATGCTTCCATGTTTCGGAGTTGCAGGTACGAAAACTGG
GGAGTACTGTGCACAGCACGCACTGGAAGGGATGGTAAACGTCAAGAGCA
AAATGTGCAGAACCGCAAGCTGCGGCAAGCAACCGTTTTTCGGAGTTGCA
GGTGCGAAATCTGGGGAGTACTGTGCCCATCACGCACTGGAGGGGATGGT
CGACGTCAAGAGCAGAAAGTGCAGAACCGAAGGGTGCGGCAAGTTTCCAT
CGTTCGGAGTTGCAGGTACAAAAACTAGGGAGTACTGTGCACAGCATGCA
CTGGAGGGGATGGTCAACATTCACAACAGAAAGTGCGGAACCGAAGACTG
CGGCAAGCTACCGTCGTTCGGAGCCGCAGGTACCAAAACTAGGGAGTACT
GTGCACAGCACGCACCGGAGGGGATGGTCAACGTCAAGAGCAAACAGTGG
AGAATCGAAGGGTATGGCGAGATACCGTCTTTCGAGGTTACAGGTACGAA
AACAGCGGAATACTGTGCAAAGTACTCCTTGGACGGAATGGTGCAGGTCA
AAAGCAGAAAGTGTAGAACCGAAGGCTGCGGTAAAATCCCATCGTACGGA
GTTGCAGGTACGAAAACGGCGGAGTACTGTGCGCAACACACCAGACTACA
ATGGAGTGTCGAAGGATTAAGGGAGCGAGAGGTTTGCCCACACCACTCCG
GGAAAGAAGCCATTGCTATCGTAATTCCGAGTGTTGCCAAACGTACGAGC
GTTTGTCCTCCTCCCACCGCGACGAGTAGGCCGTCGGGTCCTAGTCCGGA
TTCTCGTAAGCGAGTACGATACCCAGAAACTACGTCTACGGCGTCAAAGC
GAGCTATTGCACGAGAGCCGACTGCAGGAGGTGTGACTATGCCGGATATT
GACGGCCAAAAATCTCCCGCCAAACGAAATCCTTCTGTGAAGATGGAGGT
GCAGCTCTCCTTGTAG

mRNA_P-canaliculata_contig10136.225.1 (mRNA) Pelvetia canaliculata dioecious

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POSITION

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