mRNA_P-canaliculata_contig101322.222.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101322.222.1
Unique NamemRNA_P-canaliculata_contig101322.222.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101322.222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101322contigP-canaliculata_contig101322:207..977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size771
Cds size771
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.987668-CDS-P-canaliculata_contig101322:206..9771622815586.987668-CDS-P-canaliculata_contig101322:206..977Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101322 207..977 +
1693494152.289484-CDS-P-canaliculata_contig101322:206..9771693494152.289484-CDS-P-canaliculata_contig101322:206..977Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101322 207..977 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101322.222.1prot_P-canaliculata_contig101322.222.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101322 207..977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101322.222.1

>prot_P-canaliculata_contig101322.222.1 ID=prot_P-canaliculata_contig101322.222.1|Name=mRNA_P-canaliculata_contig101322.222.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=257bp
RLLRFRLRTILLLILLASAWMAWHLDRSKKQVRAVEGVTSTGGSVIYDFK
FDGDPVFTNYRENAESPYPKFILDAVGYDFLHSVVSIRLNPNQDSNDNNK
QSTDWAEHLEGVKNLRHVYMRGNQVDDEVLKRLGKLKHLRSVNVWFGTSV
TDKGIQDLAKSRKIKSVRFQHGGLTDESLKHLSTLPEIECIDLQGNCLSD
KGLNYLHDKTNLSELWVGLGNNNITNRGLKKLFRLKNIKVLGIQNIDATQ
NEVNLLK
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mRNA from alignment at P-canaliculata_contig101322:207..977+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101322.222.1 ID=mRNA_P-canaliculata_contig101322.222.1|Name=mRNA_P-canaliculata_contig101322.222.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=771bp|location=Sequence derived from alignment at P-canaliculata_contig101322:207..977+ (Pelvetia canaliculata dioecious)
CGTTTACTCCGATTCAGACTGCGAACAATACTACTGCTTATTTTGTTGGC
TAGTGCTTGGATGGCTTGGCATTTGGACCGCTCGAAGAAGCAAGTACGTG
CTGTCGAGGGGGTCACCAGCACGGGCGGCTCGGTCATTTACGATTTCAAA
TTCGATGGCGATCCGGTCTTTACGAACTATCGGGAGAATGCCGAATCGCC
TTATCCCAAATTTATACTGGACGCAGTTGGATACGACTTCCTTCACTCTG
TAGTGAGCATACGACTAAACCCGAACCAAGACAGCAATGACAACAACAAA
CAGTCAACTGACTGGGCGGAACACTTAGAGGGCGTTAAGAACTTACGGCA
TGTTTATATGCGGGGGAATCAAGTAGATGATGAAGTCTTGAAACGTCTTG
GAAAGTTAAAACACTTGAGAAGTGTCAACGTTTGGTTTGGGACTTCTGTT
ACGGATAAAGGCATTCAGGATTTGGCAAAGTCTCGTAAGATTAAATCAGT
TAGATTCCAACACGGAGGGCTAACTGACGAATCACTAAAGCATTTGTCAA
CGCTTCCTGAAATCGAGTGTATCGACTTGCAAGGAAACTGCTTGTCCGAC
AAAGGACTGAATTATTTGCACGATAAAACCAACCTTTCGGAACTTTGGGT
TGGCTTGGGCAATAACAACATTACCAACCGCGGATTAAAAAAACTTTTCC
GTTTGAAAAATATAAAAGTACTTGGAATCCAAAATATTGATGCCACTCAA
AATGAAGTTAATTTGCTAAAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig101322:207..977+

>mRNA_P-canaliculata_contig101322.222.1 ID=mRNA_P-canaliculata_contig101322.222.1|Name=mRNA_P-canaliculata_contig101322.222.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1542bp|location=Sequence derived from alignment at P-canaliculata_contig101322:207..977+ (Pelvetia canaliculata dioecious)
CGTTTACTCCGATTCAGACTGCGAACAATACTACTGCTTATTTTGTTGGC
TAGTGCTTGGATGGCTTGGCATTTGGACCGCTCGAAGAAGCAAGTACGTG
CTGTCGAGGGGGTCACCAGCACGGGCGGCTCGGTCATTTACGATTTCAAA
TTCGATGGCGATCCGGTCTTTACGAACTATCGGGAGAATGCCGAATCGCC
TTATCCCAAATTTATACTGGACGCAGTTGGATACGACTTCCTTCACTCTG
TAGTGAGCATACGACTAAACCCGAACCAAGACAGCAATGACAACAACAAA
CAGTCAACTGACTGGGCGGAACACTTAGAGGGCGTTAAGAACTTACGGCA
TGTTTATATGCGGGGGAATCAAGTAGATGATGAAGTCTTGAAACGTCTTG
GAAAGTTAAAACACTTGAGAAGTGTCAACGTTTGGTTTGGGACTTCTGTT
ACGGATAAAGGCATTCAGGATTTGGCAAAGTCTCGTAAGATTAAATCAGT
TAGATTCCAACACGGAGGGCTAACTGACGAATCACTAAAGCATTTGTCAA
CGCTTCCTGAAATCGAGTGTATCGACTTGCAAGGAAACTGCTTGTCCGAC
AAAGGACTGAATTATTTGCACGATAAAACCAACCTTTCGGAACTTTGGGT
TGGCTTGGGCAATAACAACATTACCAACCGCGGATTAAAAAAACTTTTCC
GTTTGAAAAATATAAAAGTACTTGGAATCCAAAATATTGATGCCACTCAA
AATGAAGTTAATTTGCTAAAGCGTTTACTCCGATTCAGACTGCGAACAAT
ACTACTGCTTATTTTGTTGGCTAGTGCTTGGATGGCTTGGCATTTGGACC
GCTCGAAGAAGCAAGTACGTGCTGTCGAGGGGGTCACCAGCACGGGCGGC
TCGGTCATTTACGATTTCAAATTCGATGGCGATCCGGTCTTTACGAACTA
TCGGGAGAATGCCGAATCGCCTTATCCCAAATTTATACTGGACGCAGTTG
GATACGACTTCCTTCACTCTGTAGTGAGCATACGACTAAACCCGAACCAA
GACAGCAATGACAACAACAAACAGTCAACTGACTGGGCGGAACACTTAGA
GGGCGTTAAGAACTTACGGCATGTTTATATGCGGGGGAATCAAGTAGATG
ATGAAGTCTTGAAACGTCTTGGAAAGTTAAAACACTTGAGAAGTGTCAAC
GTTTGGTTTGGGACTTCTGTTACGGATAAAGGCATTCAGGATTTGGCAAA
GTCTCGTAAGATTAAATCAGTTAGATTCCAACACGGAGGGCTAACTGACG
AATCACTAAAGCATTTGTCAACGCTTCCTGAAATCGAGTGTATCGACTTG
CAAGGAAACTGCTTGTCCGACAAAGGACTGAATTATTTGCACGATAAAAC
CAACCTTTCGGAACTTTGGGTTGGCTTGGGCAATAACAACATTACCAACC
GCGGATTAAAAAAACTTTTCCGTTTGAAAAATATAAAAGTACTTGGAATC
CAAAATATTGATGCCACTCAAAATGAAGTTAATTTGCTAAAG
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