mRNA_P-canaliculata_contig10129.218.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10129.218.1
Unique NamemRNA_P-canaliculata_contig10129.218.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10129.218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10129contigP-canaliculata_contig10129:4357..4883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size527
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10129.218.1prot_P-canaliculata_contig10129.218.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10129 4390..4695 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.5810916-UTR-P-canaliculata_contig10129:4356..43891622815586.5810916-UTR-P-canaliculata_contig10129:4356..4389Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10129 4357..4389 +
1693494152.0572248-UTR-P-canaliculata_contig10129:4356..43891693494152.0572248-UTR-P-canaliculata_contig10129:4356..4389Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10129 4357..4389 +
1622815586.6087484-UTR-P-canaliculata_contig10129:4695..48831622815586.6087484-UTR-P-canaliculata_contig10129:4695..4883Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10129 4696..4883 +
1693494152.081961-UTR-P-canaliculata_contig10129:4695..48831693494152.081961-UTR-P-canaliculata_contig10129:4695..4883Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10129 4696..4883 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.5948148-CDS-P-canaliculata_contig10129:4389..46951622815586.5948148-CDS-P-canaliculata_contig10129:4389..4695Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10129 4390..4695 +
1693494152.0709507-CDS-P-canaliculata_contig10129:4389..46951693494152.0709507-CDS-P-canaliculata_contig10129:4389..4695Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10129 4390..4695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10129.218.1

>prot_P-canaliculata_contig10129.218.1 ID=prot_P-canaliculata_contig10129.218.1|Name=mRNA_P-canaliculata_contig10129.218.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=102bp
MTLTSDNYPRNISRRVILLQTQCILTQNTAATPAPPHLAPTKIYKRQLLK
ANTLPPPSDFFASKTLVASPKYHFRPFETQLLIERGHTNPMLSIRRLSTG
V*
back to top

mRNA from alignment at P-canaliculata_contig10129:4357..4883+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10129.218.1 ID=mRNA_P-canaliculata_contig10129.218.1|Name=mRNA_P-canaliculata_contig10129.218.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=527bp|location=Sequence derived from alignment at P-canaliculata_contig10129:4357..4883+ (Pelvetia canaliculata dioecious)
GTCCCGACCCAGCACCAACTTTACCGACAACAAATGACCCTCACCTCCGA
CAATTATCCTCGAAACATATCGAGACGCGTCATACTGCTCCAGACCCAGT
GCATTCTAACCCAAAACACTGCAGCAACTCCTGCGCCACCACATCTAGCG
CCCACGAAAATCTACAAGAGGCAATTACTCAAGGCGAACACGCTACCGCC
ACCCTCCGATTTCTTCGCCAGTAAAACCCTGGTTGCCTCTCCCAAGTACC
ACTTCCGCCCGTTCGAAACACAGTTACTGATTGAAAGAGGTCACACAAAC
CCCATGCTGTCGATTAGACGTCTCTCAACAGGAGTGTGAAGTGAGAGGAA
ACGTTCCCAAAACACACCATAAAAAATGCCCCCCCCCCTGCATTGTACGC
AAGAGGCATCAAAGTAATTGTTGCATTAGACGGCCCTTGCCGGGAACTAC
GCTCCTACTCGGGCGACTACACACGGTGCCACCTCTTTGCCCCGACTGCA
CATAATACGTCATCTCCGGGCGAAATT
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig10129:4357..4883+

>mRNA_P-canaliculata_contig10129.218.1 ID=mRNA_P-canaliculata_contig10129.218.1|Name=mRNA_P-canaliculata_contig10129.218.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at P-canaliculata_contig10129:4357..4883+ (Pelvetia canaliculata dioecious)
ATGACCCTCACCTCCGACAATTATCCTCGAAACATATCGAGACGCGTCAT
ACTGCTCCAGACCCAGTGCATTCTAACCCAAAACACTGCAGCAACTCCTG
CGCCACCACATCTAGCGCCCACGAAAATCTACAAGAGGCAATTACTCAAG
GCGAACACGCTACCGCCACCCTCCGATTTCTTCGCCAGTAAAACCCTGGT
TGCCTCTCCCAAGTACCACTTCCGCCCGTTCGAAACACAGTTACTGATTG
AAAGAGGTCACACAAACCCCATGCTGTCGATTAGACGTCTCTCAACAGGA
GTGTGAATGACCCTCACCTCCGACAATTATCCTCGAAACATATCGAGACG
CGTCATACTGCTCCAGACCCAGTGCATTCTAACCCAAAACACTGCAGCAA
CTCCTGCGCCACCACATCTAGCGCCCACGAAAATCTACAAGAGGCAATTA
CTCAAGGCGAACACGCTACCGCCACCCTCCGATTTCTTCGCCAGTAAAAC
CCTGGTTGCCTCTCCCAAGTACCACTTCCGCCCGTTCGAAACACAGTTAC
TGATTGAAAGAGGTCACACAAACCCCATGCTGTCGATTAGACGTCTCTCA
ACAGGAGTGTGA
back to top