mRNA_P-canaliculata_contig10127.216.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10127.216.1
Unique NamemRNA_P-canaliculata_contig10127.216.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10127.216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10127contigP-canaliculata_contig10127:8299..8889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size591
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10127.216.1prot_P-canaliculata_contig10127.216.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10127 8405..8866 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.3818526-UTR-P-canaliculata_contig10127:8298..84041622815586.3818526-UTR-P-canaliculata_contig10127:8298..8404Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10127 8299..8404 +
1693494151.9676306-UTR-P-canaliculata_contig10127:8298..84041693494151.9676306-UTR-P-canaliculata_contig10127:8298..8404Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10127 8299..8404 +
1622815586.4161582-UTR-P-canaliculata_contig10127:8866..88891622815586.4161582-UTR-P-canaliculata_contig10127:8866..8889Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10127 8867..8889 +
1693494151.9853868-UTR-P-canaliculata_contig10127:8866..88891693494151.9853868-UTR-P-canaliculata_contig10127:8866..8889Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10127 8867..8889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.3969557-CDS-P-canaliculata_contig10127:8404..88661622815586.3969557-CDS-P-canaliculata_contig10127:8404..8866Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10127 8405..8866 +
1693494151.9764051-CDS-P-canaliculata_contig10127:8404..88661693494151.9764051-CDS-P-canaliculata_contig10127:8404..8866Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10127 8405..8866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10127.216.1

>prot_P-canaliculata_contig10127.216.1 ID=prot_P-canaliculata_contig10127.216.1|Name=mRNA_P-canaliculata_contig10127.216.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=154bp
MQRSGFENRARYPVLRCESQSTLLNWETVLRSMPVVMWLPDLRQPMLELH
GLFEFIRSFRLRKQLCLTRSRWSSNHTPWLSAFCDLASVLPIRSPQSNQC
DPIFYVRVLRSSTSVTNSFTFEKPTRSKFFLRTGENPYDVAIVLSQIQGG
TEL*
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mRNA from alignment at P-canaliculata_contig10127:8299..8889+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10127.216.1 ID=mRNA_P-canaliculata_contig10127.216.1|Name=mRNA_P-canaliculata_contig10127.216.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=591bp|location=Sequence derived from alignment at P-canaliculata_contig10127:8299..8889+ (Pelvetia canaliculata dioecious)
CGCTTCAGTACATATGCGTGCGGGCGATCGAAGTTCTCTGGAGAGATGCT
ACTCGCAAACACATTAAACAAGTGCTCGGATCCTGGGCAGCACTGCTACT
GTACCAATGCAACGTTCCGGTTTCGAAAACCGCGCGAGATACCCAGTGCT
AAGATGCGAAAGCCAAAGTACCTTATTGAATTGGGAAACAGTGCTGAGAT
CGATGCCCGTTGTGATGTGGCTGCCCGATTTGCGACAACCAATGCTCGAG
CTCCATGGCCTGTTCGAGTTTATAAGGTCCTTTCGCCTGCGCAAGCAACT
ATGCTTGACCCGATCCAGATGGTCTTCGAATCATACGCCATGGCTGTCCG
CTTTTTGCGATTTAGCATCGGTGCTACCAATTCGCTCGCCTCAAAGCAAC
CAATGTGATCCAATTTTTTATGTTCGCGTTTTGCGATCGAGCACCAGTGT
TACTAATTCGTTCACCTTCGAGAAACCAACTCGATCTAAGTTTTTCCTCC
GAACGGGGGAGAACCCGTACGACGTGGCAATTGTTTTGAGCCAGATCCAG
GGTGGAACTGAACTTTGAGGCACTAGCCTGTCACGGAAGGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig10127:8299..8889+

>mRNA_P-canaliculata_contig10127.216.1 ID=mRNA_P-canaliculata_contig10127.216.1|Name=mRNA_P-canaliculata_contig10127.216.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at P-canaliculata_contig10127:8299..8889+ (Pelvetia canaliculata dioecious)
ATGCAACGTTCCGGTTTCGAAAACCGCGCGAGATACCCAGTGCTAAGATG
CGAAAGCCAAAGTACCTTATTGAATTGGGAAACAGTGCTGAGATCGATGC
CCGTTGTGATGTGGCTGCCCGATTTGCGACAACCAATGCTCGAGCTCCAT
GGCCTGTTCGAGTTTATAAGGTCCTTTCGCCTGCGCAAGCAACTATGCTT
GACCCGATCCAGATGGTCTTCGAATCATACGCCATGGCTGTCCGCTTTTT
GCGATTTAGCATCGGTGCTACCAATTCGCTCGCCTCAAAGCAACCAATGT
GATCCAATTTTTTATGTTCGCGTTTTGCGATCGAGCACCAGTGTTACTAA
TTCGTTCACCTTCGAGAAACCAACTCGATCTAAGTTTTTCCTCCGAACGG
GGGAGAACCCGTACGACGTGGCAATTGTTTTGAGCCAGATCCAGGGTGGA
ACTGAACTTTGAATGCAACGTTCCGGTTTCGAAAACCGCGCGAGATACCC
AGTGCTAAGATGCGAAAGCCAAAGTACCTTATTGAATTGGGAAACAGTGC
TGAGATCGATGCCCGTTGTGATGTGGCTGCCCGATTTGCGACAACCAATG
CTCGAGCTCCATGGCCTGTTCGAGTTTATAAGGTCCTTTCGCCTGCGCAA
GCAACTATGCTTGACCCGATCCAGATGGTCTTCGAATCATACGCCATGGC
TGTCCGCTTTTTGCGATTTAGCATCGGTGCTACCAATTCGCTCGCCTCAA
AGCAACCAATGTGATCCAATTTTTTATGTTCGCGTTTTGCGATCGAGCAC
CAGTGTTACTAATTCGTTCACCTTCGAGAAACCAACTCGATCTAAGTTTT
TCCTCCGAACGGGGGAGAACCCGTACGACGTGGCAATTGTTTTGAGCCAG
ATCCAGGGTGGAACTGAACTTTGA
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