mRNA_P-canaliculata_contig101232.213.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101232.213.1
Unique NamemRNA_P-canaliculata_contig101232.213.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101232.213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101232contigP-canaliculata_contig101232:603..986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size326
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.2907324-CDS-P-canaliculata_contig101232:602..8091622815586.2907324-CDS-P-canaliculata_contig101232:602..809Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101232 603..809 +
1693494151.9374676-CDS-P-canaliculata_contig101232:602..8091693494151.9374676-CDS-P-canaliculata_contig101232:602..809Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101232 603..809 +
1622815586.3041432-CDS-P-canaliculata_contig101232:869..9861622815586.3041432-CDS-P-canaliculata_contig101232:869..986Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101232 870..986 +
1693494151.9460762-CDS-P-canaliculata_contig101232:869..9861693494151.9460762-CDS-P-canaliculata_contig101232:869..986Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101232 870..986 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101232.213.1prot_P-canaliculata_contig101232.213.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101232 603..986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101232.213.1

>prot_P-canaliculata_contig101232.213.1 ID=prot_P-canaliculata_contig101232.213.1|Name=mRNA_P-canaliculata_contig101232.213.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=108bp
PRVRFVPVAHDTAWLSHVRLLPCRTHASRNMLPRLVARPAARGLRARTLS
IRRSSTAALPLTLSHSSRISPLPVPDPPPHDHGPDACIAVSGNGLVLRRG
GGRGQAM*
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mRNA from alignment at P-canaliculata_contig101232:603..986+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101232.213.1 ID=mRNA_P-canaliculata_contig101232.213.1|Name=mRNA_P-canaliculata_contig101232.213.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=384bp|location=Sequence derived from alignment at P-canaliculata_contig101232:603..986+ (Pelvetia canaliculata dioecious)
CCGAGGGTTCGCTTTGTCCCCGTGGCGCACGATACGGCTTGGCTCTCGCA
CGTTCGTCTTTTGCCCTGCCGCACACACGCATCACGGAACATGCTCCCCC
GACTCGTCGCACGCCCGGCGGCCCGCGGCCTCCGCGCCCGAACCCTCTCG
ATCCGCCGCTCCAGCACGGCAGCTTTGCCCTTGACGCTATCGCACTCCTC
CCGCATCGTCAGTCCCCCGCCAGACGTCTTGTCTGTTTCCCCGCTAAACG
TCCACCGCCCCCCGCAGTCCCCCCTCCCCGTCCCCGATCCCCCGCCGCAT
GACCATGGCCCGGACGCGTGTATTGCTGTCAGCGGCAACGGGCTGGTTCT
GAGGCGGGGTGGAGGGCGGGGTCAGGCTATGTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig101232:603..986+

>mRNA_P-canaliculata_contig101232.213.1 ID=mRNA_P-canaliculata_contig101232.213.1|Name=mRNA_P-canaliculata_contig101232.213.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at P-canaliculata_contig101232:603..986+ (Pelvetia canaliculata dioecious)
CCGAGGGTTCGCTTTGTCCCCGTGGCGCACGATACGGCTTGGCTCTCGCA
CGTTCGTCTTTTGCCCTGCCGCACACACGCATCACGGAACATGCTCCCCC
GACTCGTCGCACGCCCGGCGGCCCGCGGCCTCCGCGCCCGAACCCTCTCG
ATCCGCCGCTCCAGCACGGCAGCTTTGCCCTTGACGCTATCGCACTCCTC
CCGCATCCCGAGGGTTCGCTTTGTCCCCGTGGCGCACGATACGGCTTGGC
TCTCGCACGTTCGTCTTTTGCCCTGCCGCACACACGCATCACGGAACATG
CTCCCCCGACTCGTCGCACGCCCGGCGGCCCGCGGCCTCCGCGCCCGAAC
CCTCTCGATCCGCCGCTCCAGCACGGCAGCTTTGCCCTTGACGCTATCGC
ACTCCTCCCGCATCTCCCCCCTCCCCGTCCCCGATCCCCCGCCGCATGAC
CATGGCCCGGACGCGTGTATTGCTGTCAGCGGCAACGGGCTGGTTCTGAG
GCGGGGTGGAGGGCGGGGTCAGGCTATGTAATCCCCCCTCCCCGTCCCCG
ATCCCCCGCCGCATGACCATGGCCCGGACGCGTGTATTGCTGTCAGCGGC
AACGGGCTGGTTCTGAGGCGGGGTGGAGGGCGGGGTCAGGCTATGTAA
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