Homology
BLAST of mRNA_P-canaliculata_contig101050.191.1 vs. uniprot
Match: A0A851GMS5_9BACT (Uncharacterized protein n=1 Tax=Oceaniferula marina TaxID=2748318 RepID=A0A851GMS5_9BACT) HSP 1 Score: 83.6 bits (205), Expect = 5.510e-17 Identity = 42/128 (32.81%), Postives = 72/128 (56.25%), Query Frame = 1 Query: 1 IKNKAGKSISAELISLDGDHVKMRKSAGRRDFIVPLHTLDPKSATLIRKEAAAMPEVMPDIEIDVSVSTRRRKDGKSTYVKAMTVGGKVIIENEDLEHKFPASKARIVFVGQDQRYPEKYQVLGTQDF 384
I +K G+++ EL+S G+ V +++ + F + TL +S I+++ + E P I+ V VS RR+ + S Y+K MT+ KV + NED P + I+F+GQ+QRY +++ VL + F
Sbjct: 25 ISDKKGRTMIVELVSRQGEKVVIKRLKDNKTFTIDPSTLSEESQQEIKEKLQEVKEAYPPIDATVVVSKRRKSENSSYYMKEMTISSKVTLTNEDSNVLSPTCQCNILFIGQNQRYSDRFVVLANESF 152
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 387 |
| Cds size | 387 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815584.0584533-CDS-P-canaliculata_contig101050:5..392 | 1622815584.0584533-CDS-P-canaliculata_contig101050:5..392 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig101050 6..392 - |
| 1693494150.6815796-CDS-P-canaliculata_contig101050:5..392 | 1693494150.6815796-CDS-P-canaliculata_contig101050:5..392 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig101050 6..392 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101050.191.1 >prot_P-canaliculata_contig101050.191.1 ID=prot_P-canaliculata_contig101050.191.1|Name=mRNA_P-canaliculata_contig101050.191.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=129bp
IKNKAGKSISAELISLDGDHVKMRKSAGRRDFIVPLHTLDPKSATLIRKE
AAAMPEVMPDIEIDVSVSTRRRKDGKSTYVKAMTVGGKVIIENEDLEHKF
PASKARIVFVGQDQRYPEKYQVLGTQDFD back to topmRNA from alignment at P-canaliculata_contig101050:6..392- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig101050.191.1 ID=mRNA_P-canaliculata_contig101050.191.1|Name=mRNA_P-canaliculata_contig101050.191.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=387bp|location=Sequence derived from alignment at P-canaliculata_contig101050:6..392- (Pelvetia canaliculata dioecious)
ATAAAAAATAAAGCCGGAAAGAGCATTTCCGCCGAGCTGATCTCCCTGGA
TGGCGACCATGTGAAAATGCGCAAGTCCGCGGGACGGAGGGATTTCATCG
TCCCCTTGCACACGCTGGATCCCAAAAGCGCTACACTGATCCGGAAAGAG
GCTGCCGCCATGCCGGAGGTGATGCCCGATATTGAAATCGACGTCTCGGT
AAGTACGAGGCGGCGCAAAGACGGTAAGAGCACTTACGTCAAGGCAATGA
CGGTGGGCGGGAAAGTGATCATCGAAAACGAGGATCTGGAACACAAATTC
CCAGCATCGAAGGCGCGCATTGTTTTCGTAGGCCAGGATCAGAGGTATCC
TGAAAAGTATCAGGTTCTAGGAACACAGGACTTTGAC back to topCoding sequence (CDS) from alignment at P-canaliculata_contig101050:6..392- >mRNA_P-canaliculata_contig101050.191.1 ID=mRNA_P-canaliculata_contig101050.191.1|Name=mRNA_P-canaliculata_contig101050.191.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at P-canaliculata_contig101050:6..392- (Pelvetia canaliculata dioecious)
ATAAAAAATAAAGCCGGAAAGAGCATTTCCGCCGAGCTGATCTCCCTGGA
TGGCGACCATGTGAAAATGCGCAAGTCCGCGGGACGGAGGGATTTCATCG
TCCCCTTGCACACGCTGGATCCCAAAAGCGCTACACTGATCCGGAAAGAG
GCTGCCGCCATGCCGGAGGTGATGCCCGATATTGAAATCGACGTCTCGGT
AAGTACGAGGCGGCGCAAAGACGGTAAGAGCACTTACGTCAAGGCAATGA
CGGTGGGCGGGAAAGTGATCATCGAAAACGAGGATCTGGAACACAAATTC
CCAGCATCGAAGGCGCGCATTGTTTTCGTAGGCCAGGATCAGAGGTATCC
TGAAAAGTATCAGGTTCTAGGAACACAGGACTTTGACATAAAAAATAAAG
CCGGAAAGAGCATTTCCGCCGAGCTGATCTCCCTGGATGGCGACCATGTG
AAAATGCGCAAGTCCGCGGGACGGAGGGATTTCATCGTCCCCTTGCACAC
GCTGGATCCCAAAAGCGCTACACTGATCCGGAAAGAGGCTGCCGCCATGC
CGGAGGTGATGCCCGATATTGAAATCGACGTCTCGGTAAGTACGAGGCGG
CGCAAAGACGGTAAGAGCACTTACGTCAAGGCAATGACGGTGGGCGGGAA
AGTGATCATCGAAAACGAGGATCTGGAACACAAATTCCCAGCATCGAAGG
CGCGCATTGTTTTCGTAGGCCAGGATCAGAGGTATCCTGAAAAGTATCAG
GTTCTAGGAACACAGGACTTTGAC back to top
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