mRNA_P-canaliculata_contig101050.191.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-canaliculata_contig101050.191.1
Unique Name	mRNA_P-canaliculata_contig101050.191.1
Type	mRNA
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))

Homology

[Close]

BLAST of mRNA_P-canaliculata_contig101050.191.1 vs. uniprot
Match: A0A851GMS5_9BACT (Uncharacterized protein n=1 Tax=Oceaniferula marina TaxID=2748318 RepID=A0A851GMS5_9BACT)

HSP 1 Score: 83.6 bits (205), Expect = 5.510e-17
Identity = 42/128 (32.81%), Postives = 72/128 (56.25%), Query Frame = 1

Query:    1 IKNKAGKSISAELISLDGDHVKMRKSAGRRDFIVPLHTLDPKSATLIRKEAAAMPEVMPDIEIDVSVSTRRRKDGKSTYVKAMTVGGKVIIENEDLEHKFPASKARIVFVGQDQRYPEKYQVLGTQDF 384
            I +K G+++  EL+S  G+ V +++    + F +   TL  +S   I+++   + E  P I+  V VS RR+ +  S Y+K MT+  KV + NED     P  +  I+F+GQ+QRY +++ VL  + F
Sbjct:   25 ISDKKGRTMIVELVSRQGEKVVIKRLKDNKTFTIDPSTLSEESQQEIKEKLQEVKEAYPPIDATVVVSKRRKSENSSYYMKEMTISSKVTLTNEDSNVLSPTCQCNILFIGQNQRYSDRFVVLANESF 152

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig101050.191.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig101050.191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A851GMS5_9BACT	5.510e-17	32.81	Uncharacterized protein n=1 Tax=Oceaniferula marin...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig101050	contig	P-canaliculata_contig101050:6..392 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	387
Cds size	387
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815584.0584533-CDS-P-canaliculata_contig101050:5..392	1622815584.0584533-CDS-P-canaliculata_contig101050:5..392	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig101050 6..392 -
1693494150.6815796-CDS-P-canaliculata_contig101050:5..392	1693494150.6815796-CDS-P-canaliculata_contig101050:5..392	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig101050 6..392 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig101050.191.1	prot_P-canaliculata_contig101050.191.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig101050 6..392 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-canaliculata_contig101050:6..392-
coding sequence from alignment at P-canaliculata_contig101050:6..392-

protein sequence of mRNA_P-canaliculata_contig101050.191.1

>prot_P-canaliculata_contig101050.191.1 ID=prot_P-canaliculata_contig101050.191.1|Name=mRNA_P-canaliculata_contig101050.191.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=129bp
IKNKAGKSISAELISLDGDHVKMRKSAGRRDFIVPLHTLDPKSATLIRKE
AAAMPEVMPDIEIDVSVSTRRRKDGKSTYVKAMTVGGKVIIENEDLEHKF
PASKARIVFVGQDQRYPEKYQVLGTQDFD

mRNA from alignment at P-canaliculata_contig101050:6..392-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-canaliculata_contig101050.191.1 ID=mRNA_P-canaliculata_contig101050.191.1|Name=mRNA_P-canaliculata_contig101050.191.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=387bp|location=Sequence derived from alignment at P-canaliculata_contig101050:6..392- (Pelvetia canaliculata dioecious)
ATAAAAAATAAAGCCGGAAAGAGCATTTCCGCCGAGCTGATCTCCCTGGA
TGGCGACCATGTGAAAATGCGCAAGTCCGCGGGACGGAGGGATTTCATCG
TCCCCTTGCACACGCTGGATCCCAAAAGCGCTACACTGATCCGGAAAGAG
GCTGCCGCCATGCCGGAGGTGATGCCCGATATTGAAATCGACGTCTCGGT
AAGTACGAGGCGGCGCAAAGACGGTAAGAGCACTTACGTCAAGGCAATGA
CGGTGGGCGGGAAAGTGATCATCGAAAACGAGGATCTGGAACACAAATTC
CCAGCATCGAAGGCGCGCATTGTTTTCGTAGGCCAGGATCAGAGGTATCC
TGAAAAGTATCAGGTTCTAGGAACACAGGACTTTGAC

Coding sequence (CDS) from alignment at P-canaliculata_contig101050:6..392-

>mRNA_P-canaliculata_contig101050.191.1 ID=mRNA_P-canaliculata_contig101050.191.1|Name=mRNA_P-canaliculata_contig101050.191.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at P-canaliculata_contig101050:6..392- (Pelvetia canaliculata dioecious)
ATAAAAAATAAAGCCGGAAAGAGCATTTCCGCCGAGCTGATCTCCCTGGA
TGGCGACCATGTGAAAATGCGCAAGTCCGCGGGACGGAGGGATTTCATCG
TCCCCTTGCACACGCTGGATCCCAAAAGCGCTACACTGATCCGGAAAGAG
GCTGCCGCCATGCCGGAGGTGATGCCCGATATTGAAATCGACGTCTCGGT
AAGTACGAGGCGGCGCAAAGACGGTAAGAGCACTTACGTCAAGGCAATGA
CGGTGGGCGGGAAAGTGATCATCGAAAACGAGGATCTGGAACACAAATTC
CCAGCATCGAAGGCGCGCATTGTTTTCGTAGGCCAGGATCAGAGGTATCC
TGAAAAGTATCAGGTTCTAGGAACACAGGACTTTGACATAAAAAATAAAG
CCGGAAAGAGCATTTCCGCCGAGCTGATCTCCCTGGATGGCGACCATGTG
AAAATGCGCAAGTCCGCGGGACGGAGGGATTTCATCGTCCCCTTGCACAC
GCTGGATCCCAAAAGCGCTACACTGATCCGGAAAGAGGCTGCCGCCATGC
CGGAGGTGATGCCCGATATTGAAATCGACGTCTCGGTAAGTACGAGGCGG
CGCAAAGACGGTAAGAGCACTTACGTCAAGGCAATGACGGTGGGCGGGAA
AGTGATCATCGAAAACGAGGATCTGGAACACAAATTCCCAGCATCGAAGG
CGCGCATTGTTTTCGTAGGCCAGGATCAGAGGTATCCTGAAAAGTATCAG
GTTCTAGGAACACAGGACTTTGAC