mRNA_P-canaliculata_contig10101.188.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10101.188.1
Unique NamemRNA_P-canaliculata_contig10101.188.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10101.188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10101contigP-canaliculata_contig10101:1820..2441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size605
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10101.188.1prot_P-canaliculata_contig10101.188.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10101 1954..2363 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.900645-UTR-P-canaliculata_contig10101:1819..19531622815583.900645-UTR-P-canaliculata_contig10101:1819..1953Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10101 1820..1953 -
1693494150.6107113-UTR-P-canaliculata_contig10101:1819..19531693494150.6107113-UTR-P-canaliculata_contig10101:1819..1953Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10101 1820..1953 -
1622815583.9362483-UTR-P-canaliculata_contig10101:2363..24411622815583.9362483-UTR-P-canaliculata_contig10101:2363..2441Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10101 2364..2441 -
1693494150.6409678-UTR-P-canaliculata_contig10101:2363..24411693494150.6409678-UTR-P-canaliculata_contig10101:2363..2441Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10101 2364..2441 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.9117866-CDS-P-canaliculata_contig10101:1953..21621622815583.9117866-CDS-P-canaliculata_contig10101:1953..2162Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10101 1954..2162 -
1693494150.6194353-CDS-P-canaliculata_contig10101:1953..21621693494150.6194353-CDS-P-canaliculata_contig10101:1953..2162Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10101 1954..2162 -
1622815583.9241784-CDS-P-canaliculata_contig10101:2179..23631622815583.9241784-CDS-P-canaliculata_contig10101:2179..2363Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10101 2180..2363 -
1693494150.628451-CDS-P-canaliculata_contig10101:2179..23631693494150.628451-CDS-P-canaliculata_contig10101:2179..2363Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10101 2180..2363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10101.188.1

>prot_P-canaliculata_contig10101.188.1 ID=prot_P-canaliculata_contig10101.188.1|Name=mRNA_P-canaliculata_contig10101.188.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=131bp
MLDVKSKKCKTASCGKLPSFGIAGTKYREYCAHHAPEGMVDVKNRKCRME
GCGKVPPLRIAVLCNALFGRNSASQKQKVQNQTAGQGPVDRSGRHKNGGV
PCTAHQTTMRCRRNQSERCWPAPLREGNHC*
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mRNA from alignment at P-canaliculata_contig10101:1820..2441-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10101.188.1 ID=mRNA_P-canaliculata_contig10101.188.1|Name=mRNA_P-canaliculata_contig10101.188.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=622bp|location=Sequence derived from alignment at P-canaliculata_contig10101:1820..2441- (Pelvetia canaliculata dioecious)
GGCTGCGGCAAACGAGCGTCTTTCGGAGTTGCAGGTACGAAAACGGTGGA
GTACTGCGCACAGCACGCACTGGAAGGGATGCTCGACGTCAAGAGCAAAA
AGTGTAAAACCGCAAGCTGCGGCAAGCTACCGTCTTTCGGGATTGCAGGT
ACGAAATATAGGGAGTACTGTGCACATCACGCACCGGAGGGGATGGTCGA
CGTCAAGAACAGAAAGTGCAGAATGGAAGGCTGCGGCAAGGTACCGCCTT
TGAGAATTGCAGGTACGATAACGGCGGAGTACTGTGTAACGCACTCTTTG
GACGGAATTCTGCAAGTCAAAAGCAGAAAGTGCAGAACCAAACGGCGGGG
CAAGGACCCGTTGATCGAAGTGGGCGACACAAGAACGGCGGAGTACCGTG
CACAGCACACCAGACTACAATGCGGTGTCGAAGGAATCAGAGTGAGAGAT
GTTGGCCCGCACCACTCCGGGAAGGAAACCATTGCTAACGTAGTTCCGAG
TGTCGCAAAACATACAAGCGATCGTCCTCCTCCCACCAAGACAAGTCAGC
CGTCTGGTGCTAGCCGGGACTCTCGTAAGCGAGTACGACATCTAGAAGTT
ACGTCTACGGCGTCGAAACGAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig10101:1820..2441-

>mRNA_P-canaliculata_contig10101.188.1 ID=mRNA_P-canaliculata_contig10101.188.1|Name=mRNA_P-canaliculata_contig10101.188.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at P-canaliculata_contig10101:1820..2441- (Pelvetia canaliculata dioecious)
ATGCTCGACGTCAAGAGCAAAAAGTGTAAAACCGCAAGCTGCGGCAAGCT
ACCGTCTTTCGGGATTGCAGGTACGAAATATAGGGAGTACTGTGCACATC
ACGCACCGGAGGGGATGGTCGACGTCAAGAACAGAAAGTGCAGAATGGAA
GGCTGCGGCAAGGTACCGCCTTTGAGAATTGCAGATGCTCGACGTCAAGA
GCAAAAAGTGTAAAACCGCAAGCTGCGGCAAGCTACCGTCTTTCGGGATT
GCAGGTACGAAATATAGGGAGTACTGTGCACATCACGCACCGGAGGGGAT
GGTCGACGTCAAGAACAGAAAGTGCAGAATGGAAGGCTGCGGCAAGGTAC
CGCCTTTGAGAATTGCAGTACTGTGTAACGCACTCTTTGGACGGAATTCT
GCAAGTCAAAAGCAGAAAGTGCAGAACCAAACGGCGGGGCAAGGACCCGT
TGATCGAAGTGGGCGACACAAGAACGGCGGAGTACCGTGCACAGCACACC
AGACTACAATGCGGTGTCGAAGGAATCAGAGTGAGAGATGTTGGCCCGCA
CCACTCCGGGAAGGAAACCATTGCTAATACTGTGTAACGCACTCTTTGGA
CGGAATTCTGCAAGTCAAAAGCAGAAAGTGCAGAACCAAACGGCGGGGCA
AGGACCCGTTGATCGAAGTGGGCGACACAAGAACGGCGGAGTACCGTGCA
CAGCACACCAGACTACAATGCGGTGTCGAAGGAATCAGAGTGAGAGATGT
TGGCCCGCACCACTCCGGGAAGGAAACCATTGCTAA
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