mRNA_P-canaliculata_contig100970.184.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100970.184.1
Unique NamemRNA_P-canaliculata_contig100970.184.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100970.184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100970contigP-canaliculata_contig100970:669..1004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size324
Cds size174
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100970.184.1prot_P-canaliculata_contig100970.184.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100970 669..854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.7273448-CDS-P-canaliculata_contig100970:668..7911622815583.7273448-CDS-P-canaliculata_contig100970:668..791Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100970 669..791 -
1693494150.5073707-CDS-P-canaliculata_contig100970:668..7911693494150.5073707-CDS-P-canaliculata_contig100970:668..791Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100970 669..791 -
1622815583.7379332-CDS-P-canaliculata_contig100970:803..8541622815583.7379332-CDS-P-canaliculata_contig100970:803..854Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100970 804..854 -
1693494150.5250275-CDS-P-canaliculata_contig100970:803..8541693494150.5250275-CDS-P-canaliculata_contig100970:803..854Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100970 804..854 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.7474642-UTR-P-canaliculata_contig100970:854..10041622815583.7474642-UTR-P-canaliculata_contig100970:854..1004Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100970 855..1004 -
1693494150.5432594-UTR-P-canaliculata_contig100970:854..10041693494150.5432594-UTR-P-canaliculata_contig100970:854..1004Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100970 855..1004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100970.184.1

>prot_P-canaliculata_contig100970.184.1 ID=prot_P-canaliculata_contig100970.184.1|Name=mRNA_P-canaliculata_contig100970.184.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=58bp
MEDRNPQTAALEEYNCKAASPRGSCKTRTWRKWKRPNEGLDLIKFVASAS
GPELRVV*
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mRNA from alignment at P-canaliculata_contig100970:669..1004-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100970.184.1 ID=mRNA_P-canaliculata_contig100970.184.1|Name=mRNA_P-canaliculata_contig100970.184.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=336bp|location=Sequence derived from alignment at P-canaliculata_contig100970:669..1004- (Pelvetia canaliculata dioecious)
TGGGCAGAGGCACAGCGGGGGCAAGTGTAAGTCCTGCCGCTTTGGTGTGT
GTGAGTGCTCCTCGGCGTTCCCTTGCTGAGTGAGGCCACTCCCTAAACGC
GGGTGAGTCGAAATCCCGGCGTGTGTGTGTGAGTGGAAGAGTTTTTAGAT
ATGGAGGATAGGAATCCCCAGACGGCAGCGCTCGAGGAATACAACTGCAA
AGCTAACTGCAAGGCTGCGAGTCCAAGAGGCAGCTGCAAGACGAGGACCT
GGAGGAAATGGAAGAGGCCGAATGAAGGACTAGATTTGATCAAATTTGTT
GCTTCTGCGTCCGGCCCGGAACTACGGGTGGTGTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig100970:669..1004-

>mRNA_P-canaliculata_contig100970.184.1 ID=mRNA_P-canaliculata_contig100970.184.1|Name=mRNA_P-canaliculata_contig100970.184.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at P-canaliculata_contig100970:669..1004- (Pelvetia canaliculata dioecious)
ATGGAGGATAGGAATCCCCAGACGGCAGCGCTCGAGGAATACAACTGCAA
AATGGAGGATAGGAATCCCCAGACGGCAGCGCTCGAGGAATACAACTGCA
AAGCTGCGAGTCCAAGAGGCAGCTGCAAGACGAGGACCTGGAGGAAATGG
AAGAGGCCGAATGAAGGACTAGATTTGATCAAATTTGTTGCTTCTGCGTC
CGGCCCGGAACTACGGGTGGTGTAAGCTGCGAGTCCAAGAGGCAGCTGCA
AGACGAGGACCTGGAGGAAATGGAAGAGGCCGAATGAAGGACTAGATTTG
ATCAAATTTGTTGCTTCTGCGTCCGGCCCGGAACTACGGGTGGTGTAA
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