Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 2827 |
| Cds size | 1539 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815583.497432-UTR-P-canaliculata_contig10097:6386..7330 | 1622815583.497432-UTR-P-canaliculata_contig10097:6386..7330 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10097 6387..7330 - |
| 1693494150.351965-UTR-P-canaliculata_contig10097:6386..7330 | 1693494150.351965-UTR-P-canaliculata_contig10097:6386..7330 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10097 6387..7330 - |
| 1622815583.566055-UTR-P-canaliculata_contig10097:10027..10371 | 1622815583.566055-UTR-P-canaliculata_contig10097:10027..10371 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10097 10028..10371 - |
| 1693494150.4007115-UTR-P-canaliculata_contig10097:10027..10371 | 1693494150.4007115-UTR-P-canaliculata_contig10097:10027..10371 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10097 10028..10371 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815583.5119622-CDS-P-canaliculata_contig10097:7330..7526 | 1622815583.5119622-CDS-P-canaliculata_contig10097:7330..7526 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10097 7331..7526 - |
| 1693494150.3635857-CDS-P-canaliculata_contig10097:7330..7526 | 1693494150.3635857-CDS-P-canaliculata_contig10097:7330..7526 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10097 7331..7526 - |
| 1622815583.5243816-CDS-P-canaliculata_contig10097:7903..8278 | 1622815583.5243816-CDS-P-canaliculata_contig10097:7903..8278 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10097 7904..8278 - |
| 1693494150.3734207-CDS-P-canaliculata_contig10097:7903..8278 | 1693494150.3734207-CDS-P-canaliculata_contig10097:7903..8278 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10097 7904..8278 - |
| 1622815583.5373518-CDS-P-canaliculata_contig10097:8508..8876 | 1622815583.5373518-CDS-P-canaliculata_contig10097:8508..8876 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10097 8509..8876 - |
| 1693494150.3808997-CDS-P-canaliculata_contig10097:8508..8876 | 1693494150.3808997-CDS-P-canaliculata_contig10097:8508..8876 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10097 8509..8876 - |
| 1622815583.550271-CDS-P-canaliculata_contig10097:9427..10027 | 1622815583.550271-CDS-P-canaliculata_contig10097:9427..10027 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10097 9428..10027 - |
| 1693494150.3913982-CDS-P-canaliculata_contig10097:9427..10027 | 1693494150.3913982-CDS-P-canaliculata_contig10097:9427..10027 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10097 9428..10027 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10097.183.1 >prot_P-canaliculata_contig10097.183.1 ID=prot_P-canaliculata_contig10097.183.1|Name=mRNA_P-canaliculata_contig10097.183.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=513bp
MSSPEKREARVQRLLQSTGPAWGGTETRSAYVYPRSICPLRRIAGISLGV
EVGDERYEGREQPTGYDLTQLLDEIFPREDAPSNSITVDIGENIAAGQDQ
VAKSKEEATKDSKIKIERYAPTGVSIAGDAESDDGEGEPRVASDERPRHP
KRDLRASAGGSRNGPPGRPVFHTYGGGNTSPAVGGVVYGSYMLSHSITPQ
VFPNRPRTRQVYASTQRSAERAAARVRAGESRHRKYGTIDTLQNDTTGGG
TNSSARRGRVASKVPMTKRVTVPDGRGGNMETRSIVEGEDGISKAVRATR
EEKQSEEKCGTSKTLNNRVLLFRALPDSDGDRYYVESRHPSKARQSRHYS
KARPSSARTCPRESRDPVAEETNPPPGGATGSEQLYPTEEHERQPVDDAL
STSLDSRSDAMAQNGSHSVGHPSPAALHAWTADRRLMNDPRNYKFLPRGW
AGELITPAGLPGPEPSGVEAVFPLREEGLRKGRGGSRNSRNCLESGVGAC
LVWDPPDGPRSR* back to topmRNA from alignment at P-canaliculata_contig10097:6387..10371- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig10097.183.1 ID=mRNA_P-canaliculata_contig10097.183.1|Name=mRNA_P-canaliculata_contig10097.183.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3985bp|location=Sequence derived from alignment at P-canaliculata_contig10097:6387..10371- (Pelvetia canaliculata dioecious)
CTCGCCGTTACTGGACAATAGAAGCAGAGGCAACAACGGCGAACGGAAAC
TGCGAAGTTGTTATTGGTGATACGACTGTTTCTGCTTCATATTCCTCGAA
TGACTACGACTTCTGTAACAGCCAGCGTCTGTTGTGGCGGCTGCTAGGTC
GGGTGGTATCCTGCTCGAAATCTCACCTCGCTTCCGTTTCTGGCGGTTGT
ACACGAAGGCACACACGCCTAGTGCTGAAATAGGTGTCGACATTGATCTT
AAGAGGTTGACTTAAAAAACTACATCGATCGTAGGAAACAGTCCAAGAGG
TGATCATTCCTTAGGCAGCAAGGACTCTCACGTGAGAAGAATATATGTCG
TCACCCGAGAAACGCGAGGCGAGGGTCCAAAGATTGCTCCAATCGACGGG
ACCCGCGTGGGGGGGCACAGAAACGCGATCTGCCTACGTTTACCCGAGGT
CGATCTGCCCGCTACGGAGGATCGCCGGGATCAGCTTAGGAGTGGAGGTT
GGTGACGAGAGGTACGAAGGACGAGAGCAGCCCACTGGCTACGACCTTAC
CCAGCTGCTGGACGAGATTTTCCCACGAGAAGATGCTCCGTCAAACAGCA
TCACAGTTGACATCGGCGAGAATATTGCGGCCGGTCAAGACCAAGTCGCG
AAGAGCAAGGAGGAGGCCACTAAAGACAGCAAAATCAAAATCGAAAGGTA
CGCCCCGACCGGCGTTAGCATTGCAGGTGATGCTGAGAGCGATGATGGGG
AAGGAGAACCCCGCGTTGCGAGCGATGAGCGTCCGAGACATCCCAAACGC
GATCTTCGTGCGTCCGCGGGTGGATCAAGAAACGGCCCGCCGGGCCGGCC
GGTGTTCCACACCTACGGTGGTGGAAACACGTCTCCAGCGGTCGGGGGAG
TGGTCTACGGCAGCTACATGCTCTCTCACTCTATCACGCCACAGGTAAGC
AGCCTTCAGGTGCAACACTGCCAGTGCCTTGACCCCTGTTTGTGCTTCTC
CTCTAGGAATTGAAGCAAACGCTGAACAACACACGCGCCCCTGCCAATCC
GACAACCCAAATTATTGGACGAGTATTGCCTTCCAAGCTGTGTCATTATG
CGCCATCCAGCGAACAGTAACTCCTCCCCTAGAGCTGGAGCCTTTGTGCT
CGGCCGCGTTCGGACTCGATGTCTTGAAACGTGGTCCATACTGAGAAATA
CCGTAGTCCGTACGAGTAGGCAGACCAGGAGTAAATGCACCTCCAATACT
GCCGTGTACCACACTGTGCTTGTTCACTTGTACTTTATCCTTTTGATACC
AGGTACGTATAAAGCGCATGCAATGCGCAGAGGCGCGAATGTGTGCCGTA
GCGGTAAATACTAGCGGTCAATACCAAAGCCTGGGCATTGAAACGCCGAT
GGTCTGACGCAGCGATTTCTGTCGACTCCGCGGTGGCGGAGCCAACCCCT
TCTCGCTCATACGCCTATGATGTCTTCGCCCGCATCTTGTCGCAGGTTTT
CCCGAATAGACCTCGTACCCGCCAGGTGTACGCCAGTACACAACGCTCCG
CCGAGCGGGCTGCAGCCAGAGTTCGGGCAGGAGAGAGCAGGCATCGAAAA
TATGGCACTATTGATACCTTGCAGAACGACACCACTGGCGGGGGTACAAA
CTCGAGTGCACGGAGGGGACGGGTTGCGTCTAAGGTACCGATGACCAAAC
GCGTAACGGTACCTGATGGGCGTGGTGGCAACATGGAGACGCGGTCGATA
GTGGAGGGGGAAGATGGCATCAGCAAGGCGGTGAGGGCGACGAGGGAAGA
GAAGCAATCGGAGGAGAAATGCGGTACTTCCAAGACGCTCAACAATCGCG
TGCTTCTTTTTAGGTATACTTGTTTCCAGTACCGTGCCGTGGTGGGGTTG
GCGGAACAATTCGTCACATGTGTCTTAGGTGTAATGAGAGACGATTTTTT
TTTTTATCATCTTATTTACTTCTTTCTCTAGCTCTCGCCATTGCTTACGG
TAGCGTCCGCCGGCCCTTCTACATTGCTGTTGTTTTTGTTTCTTGACTAA
ACGCATTCGTGTTGCTTCTATGCCCGCTCTCCGCTCCCATCAGAGCTCTC
CCAGACAGCGACGGAGATCGATACTATGTCGAATCTCGGCACCCTTCTAA
AGCCCGCCAATCTCGGCACTATTCCAAAGCCCGCCCGTCCTCGGCAAGAA
CGTGCCCCCGGGAAAGCCGCGACCCTGTGGCGGAGGAGACTAATCCTCCT
CCAGGGGGAGCCACGGGATCTGAGCAACTTTATCCCACCGAGGAGCATGA
GCGGCAACCGGTCGATGATGCTCTGTCGACAAGCCTCGATTCGCGCTCCG
ACGCCATGGCACAGAACGGTTCGCACTCAGTGGGTCATCCATCGCCAGCT
GCGCTTCACGCTTGGACGGCGGATCGGCGTCTTATGAACGATCCGAGGAA
CTACAAGTTCCTACCACGGTGAGCCACCCTTGCGTGAAATACCCGCTTGG
AGTTGAACATTTATCGAACAATTTCCCCCGCTCGCGGCTCGGTGGGATCG
CGCAAGGGATCTATGAACTCCCCACAGGCCAAAGAGGCTGCTGCTGCGGC
AGAAATAGAACTCTAGAGCTTTAGCATTCTAGGGCAATATAGCATAGGCG
GGGGAAATTGTGTTGGAACTGATGGCAAGCCACGAAAAAAAGAGAGGGGA
AAATAAATAAATCGCGCGGGATGGAAGAAATTTCCGATCGCCTCGATATC
TATACAAAGTACATTGCAAGGCATTTAATACACAAAACAACGACGCGACC
CTAGCCCGTAAGATTACACCATTCGCCGCTTTTGCTGTTGCGAAGGGGAT
GGGCGGGGGAGCTCATAACCCCAGCAGGACTGCCTGGCCCTGAGCCTTCC
GGCGTCGAGGCGGTGTTTCCGTTGAGGGAAGAGGGGCTACGCAAGGGCAG
AGGAGGCTCGAGAAACTCAAGAAACTGCCTGGAGAGTGGGGTAGGAGCTT
GCCTGGTATGGGATCCTCCCGACGGGCCTCGATCACGATGAGAACGAGAG
AAACATGGCGTCTTTCCATCAAACTGGAGTGTCATATTGCAGACCAAACT
GGGAGGTCAAGTATCGGGCGTCGCCTAAAGAGCTTTGTCAACGCTAGTCT
TTAATGTTAAGTTAGTCGGGCGCCTTGTTACGCTAAAGCAGATTGCTTCG
ACACCGACGCGTGGGAAAAGAGTCTATTGCGTCTTGTATATACTGAGTCC
TGTATATAGCGTATCGCAGGACGTGTTGCCAAGAAGGAACAACGAGGAGG
GAGGACGAAGTCTCTTTTGACTGCAGCTACTGCCGTATGTAAGAAGCATT
TTGTCCTTTTGCCTCTGATTGCAACAGCCGAGGCACGAGCAATTACCCTA
TTCGCCGGCATCTCTATATAACCATTGCCATAAGCCATTGCCACGTCTTT
CGTCCACGTACCGTCCTTCACACTTTGAAACCGTGTTGTTTAACCTACAG
TGCTATCATTAGAATAATGCTGTAACCTATTCCTGCATTATTATCACACA
GTTTTTTCAAGTGTGATCCGTACACTCTCTGTACCTCGGGATTCTCCCAC
GTAAAAGCGAAGCAACAACCGGACTTGAGTGCAAAATAAAATCGGGGTCG
CCTGATGATGTTACACGTTAACACCACGCGGCAGGCGCAGCTTATTTTTC
TATACCCTTATGACAAATGCAGATGTTCGTGGCCTGTCACGGTATAGGCT
CTACTACATCCGATATTCCAGAGGGCCCGGTGATTGTATAACTCTGGCCA
ATATAATAAAGTTACTTGTGCACGTTTCCACTTATATACCCAAAAACTCT
GTTAATACAGGGTGATTCGATCTTCACGGAACAGCGATCATGCAGATCGC
GAATACATGGCTCCACAACCCCCCCCCCCATCAATAATGCCGTTACCAAT
CACCGAAATTAATAAACAGAAAGCGGATGCGTAGC back to topCoding sequence (CDS) from alignment at P-canaliculata_contig10097:6387..10371- >mRNA_P-canaliculata_contig10097.183.1 ID=mRNA_P-canaliculata_contig10097.183.1|Name=mRNA_P-canaliculata_contig10097.183.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=3078bp|location=Sequence derived from alignment at P-canaliculata_contig10097:6387..10371- (Pelvetia canaliculata dioecious)
ATGTCGTCACCCGAGAAACGCGAGGCGAGGGTCCAAAGATTGCTCCAATC
GACGGGACCCGCGTGGGGGGGCACAGAAACGCGATCTGCCTACGTTTACC
CGAGGTCGATCTGCCCGCTACGGAGGATCGCCGGGATCAGCTTAGGAGTG
GAGGTTGGTGACGAGAGGTACGAAGGACGAGAGCAGCCCACTGGCTACGA
CCTTACCCAGCTGCTGGACGAGATTTTCCCACGAGAAGATGCTCCGTCAA
ACAGCATCACAGTTGACATCGGCGAGAATATTGCGGCCGGTCAAGACCAA
GTCGCGAAGAGCAAGGAGGAGGCCACTAAAGACAGCAAAATCAAAATCGA
AAGGTACGCCCCGACCGGCGTTAGCATTGCAGGTGATGCTGAGAGCGATG
ATGGGGAAGGAGAACCCCGCGTTGCGAGCGATGAGCGTCCGAGACATCCC
AAACGCGATCTTCGTGCGTCCGCGGGTGGATCAAGAAACGGCCCGCCGGG
CCGGCCGGTGTTCCACACCTACGGTGGTGGAAACACGTCTCCAGCGGTCG
GGGGAGTGGTCTACGGCAGCTACATGCTCTCTCACTCTATCACGCCACAG
ATGTCGTCACCCGAGAAACGCGAGGCGAGGGTCCAAAGATTGCTCCAATC
GACGGGACCCGCGTGGGGGGGCACAGAAACGCGATCTGCCTACGTTTACC
CGAGGTCGATCTGCCCGCTACGGAGGATCGCCGGGATCAGCTTAGGAGTG
GAGGTTGGTGACGAGAGGTACGAAGGACGAGAGCAGCCCACTGGCTACGA
CCTTACCCAGCTGCTGGACGAGATTTTCCCACGAGAAGATGCTCCGTCAA
ACAGCATCACAGTTGACATCGGCGAGAATATTGCGGCCGGTCAAGACCAA
GTCGCGAAGAGCAAGGAGGAGGCCACTAAAGACAGCAAAATCAAAATCGA
AAGGTACGCCCCGACCGGCGTTAGCATTGCAGGTGATGCTGAGAGCGATG
ATGGGGAAGGAGAACCCCGCGTTGCGAGCGATGAGCGTCCGAGACATCCC
AAACGCGATCTTCGTGCGTCCGCGGGTGGATCAAGAAACGGCCCGCCGGG
CCGGCCGGTGTTCCACACCTACGGTGGTGGAAACACGTCTCCAGCGGTCG
GGGGAGTGGTCTACGGCAGCTACATGCTCTCTCACTCTATCACGCCACAG
GTTTTCCCGAATAGACCTCGTACCCGCCAGGTGTACGCCAGTACACAACG
CTCCGCCGAGCGGGCTGCAGCCAGAGTTCGGGCAGGAGAGAGCAGGCATC
GAAAATATGGCACTATTGATACCTTGCAGAACGACACCACTGGCGGGGGT
ACAAACTCGAGTGCACGGAGGGGACGGGTTGCGTCTAAGGTACCGATGAC
CAAACGCGTAACGGTACCTGATGGGCGTGGTGGCAACATGGAGACGCGGT
CGATAGTGGAGGGGGAAGATGGCATCAGCAAGGCGGTGAGGGCGACGAGG
GAAGAGAAGCAATCGGAGGAGAAATGCGGTACTTCCAAGACGCTCAACAA
TCGCGTGCTTCTTTTTAGGTTTTCCCGAATAGACCTCGTACCCGCCAGGT
GTACGCCAGTACACAACGCTCCGCCGAGCGGGCTGCAGCCAGAGTTCGGG
CAGGAGAGAGCAGGCATCGAAAATATGGCACTATTGATACCTTGCAGAAC
GACACCACTGGCGGGGGTACAAACTCGAGTGCACGGAGGGGACGGGTTGC
GTCTAAGGTACCGATGACCAAACGCGTAACGGTACCTGATGGGCGTGGTG
GCAACATGGAGACGCGGTCGATAGTGGAGGGGGAAGATGGCATCAGCAAG
GCGGTGAGGGCGACGAGGGAAGAGAAGCAATCGGAGGAGAAATGCGGTAC
TTCCAAGACGCTCAACAATCGCGTGCTTCTTTTTAGAGCTCTCCCAGACA
GCGACGGAGATCGATACTATGTCGAATCTCGGCACCCTTCTAAAGCCCGC
CAATCTCGGCACTATTCCAAAGCCCGCCCGTCCTCGGCAAGAACGTGCCC
CCGGGAAAGCCGCGACCCTGTGGCGGAGGAGACTAATCCTCCTCCAGGGG
GAGCCACGGGATCTGAGCAACTTTATCCCACCGAGGAGCATGAGCGGCAA
CCGGTCGATGATGCTCTGTCGACAAGCCTCGATTCGCGCTCCGACGCCAT
GGCACAGAACGGTTCGCACTCAGTGGGTCATCCATCGCCAGCTGCGCTTC
ACGCTTGGACGGCGGATCGGCGTCTTATGAACGATCCGAGGAACTACAAG
TTCCTACCACGAGCTCTCCCAGACAGCGACGGAGATCGATACTATGTCGA
ATCTCGGCACCCTTCTAAAGCCCGCCAATCTCGGCACTATTCCAAAGCCC
GCCCGTCCTCGGCAAGAACGTGCCCCCGGGAAAGCCGCGACCCTGTGGCG
GAGGAGACTAATCCTCCTCCAGGGGGAGCCACGGGATCTGAGCAACTTTA
TCCCACCGAGGAGCATGAGCGGCAACCGGTCGATGATGCTCTGTCGACAA
GCCTCGATTCGCGCTCCGACGCCATGGCACAGAACGGTTCGCACTCAGTG
GGTCATCCATCGCCAGCTGCGCTTCACGCTTGGACGGCGGATCGGCGTCT
TATGAACGATCCGAGGAACTACAAGTTCCTACCACGGGGATGGGCGGGGG
AGCTCATAACCCCAGCAGGACTGCCTGGCCCTGAGCCTTCCGGCGTCGAG
GCGGTGTTTCCGTTGAGGGAAGAGGGGCTACGCAAGGGCAGAGGAGGCTC
GAGAAACTCAAGAAACTGCCTGGAGAGTGGGGTAGGAGCTTGCCTGGTAT
GGGATCCTCCCGACGGGCCTCGATCACGATGAGGGATGGGCGGGGGAGCT
CATAACCCCAGCAGGACTGCCTGGCCCTGAGCCTTCCGGCGTCGAGGCGG
TGTTTCCGTTGAGGGAAGAGGGGCTACGCAAGGGCAGAGGAGGCTCGAGA
AACTCAAGAAACTGCCTGGAGAGTGGGGTAGGAGCTTGCCTGGTATGGGA
TCCTCCCGACGGGCCTCGATCACGATGA back to top
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