mRNA_P-canaliculata_contig10097.183.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	4
Model size	2827
Cds size	1539
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig10097.183.1	prot_P-canaliculata_contig10097.183.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig10097 7331..10027 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815583.497432-UTR-P-canaliculata_contig10097:6386..7330	1622815583.497432-UTR-P-canaliculata_contig10097:6386..7330	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig10097 6387..7330 -
1693494150.351965-UTR-P-canaliculata_contig10097:6386..7330	1693494150.351965-UTR-P-canaliculata_contig10097:6386..7330	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig10097 6387..7330 -
1622815583.566055-UTR-P-canaliculata_contig10097:10027..10371	1622815583.566055-UTR-P-canaliculata_contig10097:10027..10371	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig10097 10028..10371 -
1693494150.4007115-UTR-P-canaliculata_contig10097:10027..10371	1693494150.4007115-UTR-P-canaliculata_contig10097:10027..10371	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig10097 10028..10371 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815583.5119622-CDS-P-canaliculata_contig10097:7330..7526	1622815583.5119622-CDS-P-canaliculata_contig10097:7330..7526	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig10097 7331..7526 -
1693494150.3635857-CDS-P-canaliculata_contig10097:7330..7526	1693494150.3635857-CDS-P-canaliculata_contig10097:7330..7526	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig10097 7331..7526 -
1622815583.5243816-CDS-P-canaliculata_contig10097:7903..8278	1622815583.5243816-CDS-P-canaliculata_contig10097:7903..8278	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig10097 7904..8278 -
1693494150.3734207-CDS-P-canaliculata_contig10097:7903..8278	1693494150.3734207-CDS-P-canaliculata_contig10097:7903..8278	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig10097 7904..8278 -
1622815583.5373518-CDS-P-canaliculata_contig10097:8508..8876	1622815583.5373518-CDS-P-canaliculata_contig10097:8508..8876	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig10097 8509..8876 -
1693494150.3808997-CDS-P-canaliculata_contig10097:8508..8876	1693494150.3808997-CDS-P-canaliculata_contig10097:8508..8876	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig10097 8509..8876 -
1622815583.550271-CDS-P-canaliculata_contig10097:9427..10027	1622815583.550271-CDS-P-canaliculata_contig10097:9427..10027	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig10097 9428..10027 -
1693494150.3913982-CDS-P-canaliculata_contig10097:9427..10027	1693494150.3913982-CDS-P-canaliculata_contig10097:9427..10027	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig10097 9428..10027 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-canaliculata_contig10097:6387..10371-
coding sequence from alignment at P-canaliculata_contig10097:6387..10371-

protein sequence of mRNA_P-canaliculata_contig10097.183.1

>prot_P-canaliculata_contig10097.183.1 ID=prot_P-canaliculata_contig10097.183.1|Name=mRNA_P-canaliculata_contig10097.183.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=513bp
MSSPEKREARVQRLLQSTGPAWGGTETRSAYVYPRSICPLRRIAGISLGV
EVGDERYEGREQPTGYDLTQLLDEIFPREDAPSNSITVDIGENIAAGQDQ
VAKSKEEATKDSKIKIERYAPTGVSIAGDAESDDGEGEPRVASDERPRHP
KRDLRASAGGSRNGPPGRPVFHTYGGGNTSPAVGGVVYGSYMLSHSITPQ
VFPNRPRTRQVYASTQRSAERAAARVRAGESRHRKYGTIDTLQNDTTGGG
TNSSARRGRVASKVPMTKRVTVPDGRGGNMETRSIVEGEDGISKAVRATR
EEKQSEEKCGTSKTLNNRVLLFRALPDSDGDRYYVESRHPSKARQSRHYS
KARPSSARTCPRESRDPVAEETNPPPGGATGSEQLYPTEEHERQPVDDAL
STSLDSRSDAMAQNGSHSVGHPSPAALHAWTADRRLMNDPRNYKFLPRGW
AGELITPAGLPGPEPSGVEAVFPLREEGLRKGRGGSRNSRNCLESGVGAC
LVWDPPDGPRSR*

mRNA from alignment at P-canaliculata_contig10097:6387..10371-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-canaliculata_contig10097.183.1 ID=mRNA_P-canaliculata_contig10097.183.1|Name=mRNA_P-canaliculata_contig10097.183.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3985bp|location=Sequence derived from alignment at P-canaliculata_contig10097:6387..10371- (Pelvetia canaliculata dioecious)
CTCGCCGTTACTGGACAATAGAAGCAGAGGCAACAACGGCGAACGGAAAC
TGCGAAGTTGTTATTGGTGATACGACTGTTTCTGCTTCATATTCCTCGAA
TGACTACGACTTCTGTAACAGCCAGCGTCTGTTGTGGCGGCTGCTAGGTC
GGGTGGTATCCTGCTCGAAATCTCACCTCGCTTCCGTTTCTGGCGGTTGT
ACACGAAGGCACACACGCCTAGTGCTGAAATAGGTGTCGACATTGATCTT
AAGAGGTTGACTTAAAAAACTACATCGATCGTAGGAAACAGTCCAAGAGG
TGATCATTCCTTAGGCAGCAAGGACTCTCACGTGAGAAGAATATATGTCG
TCACCCGAGAAACGCGAGGCGAGGGTCCAAAGATTGCTCCAATCGACGGG
ACCCGCGTGGGGGGGCACAGAAACGCGATCTGCCTACGTTTACCCGAGGT
CGATCTGCCCGCTACGGAGGATCGCCGGGATCAGCTTAGGAGTGGAGGTT
GGTGACGAGAGGTACGAAGGACGAGAGCAGCCCACTGGCTACGACCTTAC
CCAGCTGCTGGACGAGATTTTCCCACGAGAAGATGCTCCGTCAAACAGCA
TCACAGTTGACATCGGCGAGAATATTGCGGCCGGTCAAGACCAAGTCGCG
AAGAGCAAGGAGGAGGCCACTAAAGACAGCAAAATCAAAATCGAAAGGTA
CGCCCCGACCGGCGTTAGCATTGCAGGTGATGCTGAGAGCGATGATGGGG
AAGGAGAACCCCGCGTTGCGAGCGATGAGCGTCCGAGACATCCCAAACGC
GATCTTCGTGCGTCCGCGGGTGGATCAAGAAACGGCCCGCCGGGCCGGCC
GGTGTTCCACACCTACGGTGGTGGAAACACGTCTCCAGCGGTCGGGGGAG
TGGTCTACGGCAGCTACATGCTCTCTCACTCTATCACGCCACAGGTAAGC
AGCCTTCAGGTGCAACACTGCCAGTGCCTTGACCCCTGTTTGTGCTTCTC
CTCTAGGAATTGAAGCAAACGCTGAACAACACACGCGCCCCTGCCAATCC
GACAACCCAAATTATTGGACGAGTATTGCCTTCCAAGCTGTGTCATTATG
CGCCATCCAGCGAACAGTAACTCCTCCCCTAGAGCTGGAGCCTTTGTGCT
CGGCCGCGTTCGGACTCGATGTCTTGAAACGTGGTCCATACTGAGAAATA
CCGTAGTCCGTACGAGTAGGCAGACCAGGAGTAAATGCACCTCCAATACT
GCCGTGTACCACACTGTGCTTGTTCACTTGTACTTTATCCTTTTGATACC
AGGTACGTATAAAGCGCATGCAATGCGCAGAGGCGCGAATGTGTGCCGTA
GCGGTAAATACTAGCGGTCAATACCAAAGCCTGGGCATTGAAACGCCGAT
GGTCTGACGCAGCGATTTCTGTCGACTCCGCGGTGGCGGAGCCAACCCCT
TCTCGCTCATACGCCTATGATGTCTTCGCCCGCATCTTGTCGCAGGTTTT
CCCGAATAGACCTCGTACCCGCCAGGTGTACGCCAGTACACAACGCTCCG
CCGAGCGGGCTGCAGCCAGAGTTCGGGCAGGAGAGAGCAGGCATCGAAAA
TATGGCACTATTGATACCTTGCAGAACGACACCACTGGCGGGGGTACAAA
CTCGAGTGCACGGAGGGGACGGGTTGCGTCTAAGGTACCGATGACCAAAC
GCGTAACGGTACCTGATGGGCGTGGTGGCAACATGGAGACGCGGTCGATA
GTGGAGGGGGAAGATGGCATCAGCAAGGCGGTGAGGGCGACGAGGGAAGA
GAAGCAATCGGAGGAGAAATGCGGTACTTCCAAGACGCTCAACAATCGCG
TGCTTCTTTTTAGGTATACTTGTTTCCAGTACCGTGCCGTGGTGGGGTTG
GCGGAACAATTCGTCACATGTGTCTTAGGTGTAATGAGAGACGATTTTTT
TTTTTATCATCTTATTTACTTCTTTCTCTAGCTCTCGCCATTGCTTACGG
TAGCGTCCGCCGGCCCTTCTACATTGCTGTTGTTTTTGTTTCTTGACTAA
ACGCATTCGTGTTGCTTCTATGCCCGCTCTCCGCTCCCATCAGAGCTCTC
CCAGACAGCGACGGAGATCGATACTATGTCGAATCTCGGCACCCTTCTAA
AGCCCGCCAATCTCGGCACTATTCCAAAGCCCGCCCGTCCTCGGCAAGAA
CGTGCCCCCGGGAAAGCCGCGACCCTGTGGCGGAGGAGACTAATCCTCCT
CCAGGGGGAGCCACGGGATCTGAGCAACTTTATCCCACCGAGGAGCATGA
GCGGCAACCGGTCGATGATGCTCTGTCGACAAGCCTCGATTCGCGCTCCG
ACGCCATGGCACAGAACGGTTCGCACTCAGTGGGTCATCCATCGCCAGCT
GCGCTTCACGCTTGGACGGCGGATCGGCGTCTTATGAACGATCCGAGGAA
CTACAAGTTCCTACCACGGTGAGCCACCCTTGCGTGAAATACCCGCTTGG
AGTTGAACATTTATCGAACAATTTCCCCCGCTCGCGGCTCGGTGGGATCG
CGCAAGGGATCTATGAACTCCCCACAGGCCAAAGAGGCTGCTGCTGCGGC
AGAAATAGAACTCTAGAGCTTTAGCATTCTAGGGCAATATAGCATAGGCG
GGGGAAATTGTGTTGGAACTGATGGCAAGCCACGAAAAAAAGAGAGGGGA
AAATAAATAAATCGCGCGGGATGGAAGAAATTTCCGATCGCCTCGATATC
TATACAAAGTACATTGCAAGGCATTTAATACACAAAACAACGACGCGACC
CTAGCCCGTAAGATTACACCATTCGCCGCTTTTGCTGTTGCGAAGGGGAT
GGGCGGGGGAGCTCATAACCCCAGCAGGACTGCCTGGCCCTGAGCCTTCC
GGCGTCGAGGCGGTGTTTCCGTTGAGGGAAGAGGGGCTACGCAAGGGCAG
AGGAGGCTCGAGAAACTCAAGAAACTGCCTGGAGAGTGGGGTAGGAGCTT
GCCTGGTATGGGATCCTCCCGACGGGCCTCGATCACGATGAGAACGAGAG
AAACATGGCGTCTTTCCATCAAACTGGAGTGTCATATTGCAGACCAAACT
GGGAGGTCAAGTATCGGGCGTCGCCTAAAGAGCTTTGTCAACGCTAGTCT
TTAATGTTAAGTTAGTCGGGCGCCTTGTTACGCTAAAGCAGATTGCTTCG
ACACCGACGCGTGGGAAAAGAGTCTATTGCGTCTTGTATATACTGAGTCC
TGTATATAGCGTATCGCAGGACGTGTTGCCAAGAAGGAACAACGAGGAGG
GAGGACGAAGTCTCTTTTGACTGCAGCTACTGCCGTATGTAAGAAGCATT
TTGTCCTTTTGCCTCTGATTGCAACAGCCGAGGCACGAGCAATTACCCTA
TTCGCCGGCATCTCTATATAACCATTGCCATAAGCCATTGCCACGTCTTT
CGTCCACGTACCGTCCTTCACACTTTGAAACCGTGTTGTTTAACCTACAG
TGCTATCATTAGAATAATGCTGTAACCTATTCCTGCATTATTATCACACA
GTTTTTTCAAGTGTGATCCGTACACTCTCTGTACCTCGGGATTCTCCCAC
GTAAAAGCGAAGCAACAACCGGACTTGAGTGCAAAATAAAATCGGGGTCG
CCTGATGATGTTACACGTTAACACCACGCGGCAGGCGCAGCTTATTTTTC
TATACCCTTATGACAAATGCAGATGTTCGTGGCCTGTCACGGTATAGGCT
CTACTACATCCGATATTCCAGAGGGCCCGGTGATTGTATAACTCTGGCCA
ATATAATAAAGTTACTTGTGCACGTTTCCACTTATATACCCAAAAACTCT
GTTAATACAGGGTGATTCGATCTTCACGGAACAGCGATCATGCAGATCGC
GAATACATGGCTCCACAACCCCCCCCCCCATCAATAATGCCGTTACCAAT
CACCGAAATTAATAAACAGAAAGCGGATGCGTAGC

Coding sequence (CDS) from alignment at P-canaliculata_contig10097:6387..10371-

>mRNA_P-canaliculata_contig10097.183.1 ID=mRNA_P-canaliculata_contig10097.183.1|Name=mRNA_P-canaliculata_contig10097.183.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=3078bp|location=Sequence derived from alignment at P-canaliculata_contig10097:6387..10371- (Pelvetia canaliculata dioecious)
ATGTCGTCACCCGAGAAACGCGAGGCGAGGGTCCAAAGATTGCTCCAATC
GACGGGACCCGCGTGGGGGGGCACAGAAACGCGATCTGCCTACGTTTACC
CGAGGTCGATCTGCCCGCTACGGAGGATCGCCGGGATCAGCTTAGGAGTG
GAGGTTGGTGACGAGAGGTACGAAGGACGAGAGCAGCCCACTGGCTACGA
CCTTACCCAGCTGCTGGACGAGATTTTCCCACGAGAAGATGCTCCGTCAA
ACAGCATCACAGTTGACATCGGCGAGAATATTGCGGCCGGTCAAGACCAA
GTCGCGAAGAGCAAGGAGGAGGCCACTAAAGACAGCAAAATCAAAATCGA
AAGGTACGCCCCGACCGGCGTTAGCATTGCAGGTGATGCTGAGAGCGATG
ATGGGGAAGGAGAACCCCGCGTTGCGAGCGATGAGCGTCCGAGACATCCC
AAACGCGATCTTCGTGCGTCCGCGGGTGGATCAAGAAACGGCCCGCCGGG
CCGGCCGGTGTTCCACACCTACGGTGGTGGAAACACGTCTCCAGCGGTCG
GGGGAGTGGTCTACGGCAGCTACATGCTCTCTCACTCTATCACGCCACAG
ATGTCGTCACCCGAGAAACGCGAGGCGAGGGTCCAAAGATTGCTCCAATC
GACGGGACCCGCGTGGGGGGGCACAGAAACGCGATCTGCCTACGTTTACC
CGAGGTCGATCTGCCCGCTACGGAGGATCGCCGGGATCAGCTTAGGAGTG
GAGGTTGGTGACGAGAGGTACGAAGGACGAGAGCAGCCCACTGGCTACGA
CCTTACCCAGCTGCTGGACGAGATTTTCCCACGAGAAGATGCTCCGTCAA
ACAGCATCACAGTTGACATCGGCGAGAATATTGCGGCCGGTCAAGACCAA
GTCGCGAAGAGCAAGGAGGAGGCCACTAAAGACAGCAAAATCAAAATCGA
AAGGTACGCCCCGACCGGCGTTAGCATTGCAGGTGATGCTGAGAGCGATG
ATGGGGAAGGAGAACCCCGCGTTGCGAGCGATGAGCGTCCGAGACATCCC
AAACGCGATCTTCGTGCGTCCGCGGGTGGATCAAGAAACGGCCCGCCGGG
CCGGCCGGTGTTCCACACCTACGGTGGTGGAAACACGTCTCCAGCGGTCG
GGGGAGTGGTCTACGGCAGCTACATGCTCTCTCACTCTATCACGCCACAG
GTTTTCCCGAATAGACCTCGTACCCGCCAGGTGTACGCCAGTACACAACG
CTCCGCCGAGCGGGCTGCAGCCAGAGTTCGGGCAGGAGAGAGCAGGCATC
GAAAATATGGCACTATTGATACCTTGCAGAACGACACCACTGGCGGGGGT
ACAAACTCGAGTGCACGGAGGGGACGGGTTGCGTCTAAGGTACCGATGAC
CAAACGCGTAACGGTACCTGATGGGCGTGGTGGCAACATGGAGACGCGGT
CGATAGTGGAGGGGGAAGATGGCATCAGCAAGGCGGTGAGGGCGACGAGG
GAAGAGAAGCAATCGGAGGAGAAATGCGGTACTTCCAAGACGCTCAACAA
TCGCGTGCTTCTTTTTAGGTTTTCCCGAATAGACCTCGTACCCGCCAGGT
GTACGCCAGTACACAACGCTCCGCCGAGCGGGCTGCAGCCAGAGTTCGGG
CAGGAGAGAGCAGGCATCGAAAATATGGCACTATTGATACCTTGCAGAAC
GACACCACTGGCGGGGGTACAAACTCGAGTGCACGGAGGGGACGGGTTGC
GTCTAAGGTACCGATGACCAAACGCGTAACGGTACCTGATGGGCGTGGTG
GCAACATGGAGACGCGGTCGATAGTGGAGGGGGAAGATGGCATCAGCAAG
GCGGTGAGGGCGACGAGGGAAGAGAAGCAATCGGAGGAGAAATGCGGTAC
TTCCAAGACGCTCAACAATCGCGTGCTTCTTTTTAGAGCTCTCCCAGACA
GCGACGGAGATCGATACTATGTCGAATCTCGGCACCCTTCTAAAGCCCGC
CAATCTCGGCACTATTCCAAAGCCCGCCCGTCCTCGGCAAGAACGTGCCC
CCGGGAAAGCCGCGACCCTGTGGCGGAGGAGACTAATCCTCCTCCAGGGG
GAGCCACGGGATCTGAGCAACTTTATCCCACCGAGGAGCATGAGCGGCAA
CCGGTCGATGATGCTCTGTCGACAAGCCTCGATTCGCGCTCCGACGCCAT
GGCACAGAACGGTTCGCACTCAGTGGGTCATCCATCGCCAGCTGCGCTTC
ACGCTTGGACGGCGGATCGGCGTCTTATGAACGATCCGAGGAACTACAAG
TTCCTACCACGAGCTCTCCCAGACAGCGACGGAGATCGATACTATGTCGA
ATCTCGGCACCCTTCTAAAGCCCGCCAATCTCGGCACTATTCCAAAGCCC
GCCCGTCCTCGGCAAGAACGTGCCCCCGGGAAAGCCGCGACCCTGTGGCG
GAGGAGACTAATCCTCCTCCAGGGGGAGCCACGGGATCTGAGCAACTTTA
TCCCACCGAGGAGCATGAGCGGCAACCGGTCGATGATGCTCTGTCGACAA
GCCTCGATTCGCGCTCCGACGCCATGGCACAGAACGGTTCGCACTCAGTG
GGTCATCCATCGCCAGCTGCGCTTCACGCTTGGACGGCGGATCGGCGTCT
TATGAACGATCCGAGGAACTACAAGTTCCTACCACGGGGATGGGCGGGGG
AGCTCATAACCCCAGCAGGACTGCCTGGCCCTGAGCCTTCCGGCGTCGAG
GCGGTGTTTCCGTTGAGGGAAGAGGGGCTACGCAAGGGCAGAGGAGGCTC
GAGAAACTCAAGAAACTGCCTGGAGAGTGGGGTAGGAGCTTGCCTGGTAT
GGGATCCTCCCGACGGGCCTCGATCACGATGAGGGATGGGCGGGGGAGCT
CATAACCCCAGCAGGACTGCCTGGCCCTGAGCCTTCCGGCGTCGAGGCGG
TGTTTCCGTTGAGGGAAGAGGGGCTACGCAAGGGCAGAGGAGGCTCGAGA
AACTCAAGAAACTGCCTGGAGAGTGGGGTAGGAGCTTGCCTGGTATGGGA
TCCTCCCGACGGGCCTCGATCACGATGA

mRNA_P-canaliculata_contig10097.183.1 (mRNA) Pelvetia canaliculata dioecious

ZOOM

x 1

POSITION

0