mRNA_P-canaliculata_contig10060.136.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10060.136.1 vs. uniprot
Match: D7FP83_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP83_ECTSI) HSP 1 Score: 293 bits (750), Expect = 4.100e-94 Identity = 151/166 (90.96%), Postives = 157/166 (94.58%), Query Frame = 1 Query: 1 DMFDPSVFDIKMVMGVLVVVALVAYAVFRLFVRRVVGEDDFFADLGISYKDFDMPDEVDDYYEAKENPAIAKDIPKLRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQMAETMISEEIESVQTEADEIESGWSQSIWPLAMQLRTLLVQRREQA 498
DMFDPSVFDI+MVMGVL V+L+AYA+FRLFVR+VVGEDDFFADLGISYKDFDMPDEVDDYYEAKENP IA D KLRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQ AETMISEEIESVQ EADEIE GWSQSIWPLAMQLRT+LVQRREQA
Sbjct: 33 DMFDPSVFDIRMVMGVLACVSLLAYAIFRLFVRKVVGEDDFFADLGISYKDFDMPDEVDDYYEAKENPDIASDAGKLRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQEAETMISEEIESVQNEADEIEPGWSQSIWPLAMQLRTVLVQRREQA 198
BLAST of mRNA_P-canaliculata_contig10060.136.1 vs. uniprot
Match: A0A835Z738_9STRA (Pre protein translocase subunit Sec66-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z738_9STRA) HSP 1 Score: 204 bits (518), Expect = 1.810e-59 Identity = 101/166 (60.84%), Postives = 131/166 (78.92%), Query Frame = 1 Query: 1 DMFDPSVFDIKMVMGVLVVVALVAYAVFRLFVRRVVGEDDFFADLGISYKDFDMPDEVDDYYEAKENPAIAKDIPKLRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQMAETMISEEIESVQTEADEIESGWSQSIWPLAMQLRTLLVQRREQA 498
D+FDPSVFD++MV+G L + L++Y +RL++ +VV DDF ADLGISY DF++PDE+++YYEAKE A D LRN LLKRAIADIPII+R+Q EGPG+ N+YQQAMIG++EW A+Q AE +I EEIE VQ EA+EIE GW Q IW +A +LR L+QR++QA
Sbjct: 42 DIFDPSVFDMRMVLGALTLFGLLSYFAYRLYMNKVVAGDDFIADLGISYADFELPDEIEEYYEAKE--AAGDDATALRNPLLKRAIADIPIIMRLQKEGPGMQNLYQQAMIGDREWQAYQAAEALIGEEIEQVQAEAEEIEPGWGQQIWRMASELRQALLQRQQQA 205
BLAST of mRNA_P-canaliculata_contig10060.136.1 vs. uniprot
Match: A0A1Z5KHC6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KHC6_FISSO) HSP 1 Score: 114 bits (286), Expect = 2.810e-25 Identity = 74/185 (40.00%), Postives = 101/185 (54.59%), Query Frame = 1 Query: 1 DMFDPSVFDIKMVMGVLVVVALVAYAVFRLFVRRVVGEDDFFADLGISYKDFDMPDEVDDYYEAKENPAIA--------KDIPK----------LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQMAETMISEEIESVQTEADEIESGWSQSIWPLAMQLRTLLVQRREQAE 501
D DP+ + + V+V+ L A + EDDFFA+L + +P EVD+YYE K A KD PK L AL+KRAIADIP++ +Q E G+ +Y Q+M K+W ++Q AE+++S+E+E V+ EADEIE GWSQSIW AMQ +L QR E E
Sbjct: 46 DGIDPAFYLLGAAFAVIVIYFLXXRA------KXXXSEDDFFAELDGDKFNLKLPSEVDEYYETKAKCEAAGWEPGQPIKD-PKDQQATQPQRLLAQALMKRAIADIPMVQHIQKESSGMNKLYSQSMCSVKQWRSYQQAESLVSQEVEEVRAEADEIEPGWSQSIWRQAMQYHQMLKQRHELEE 223
BLAST of mRNA_P-canaliculata_contig10060.136.1 vs. uniprot
Match: A0A7S3L5D8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L5D8_9STRA) HSP 1 Score: 114 bits (284), Expect = 5.120e-25 Identity = 62/143 (43.36%), Postives = 85/143 (59.44%), Query Frame = 1 Query: 115 DDFFADLGISYKDFDMPDEVDDYYEAKEN-----------PAIAKDIPK-----LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQMAETMISEEIESVQTEADEIESGWSQSIWPLAMQLRTLLVQRREQ 495
DDFFA L + +P EVD+YY+ KE PA ++ + AL+KRAIADIPI+ +Q E PG+ +Y Q+M EK+W A+Q AE ++S E++ V+ E+D+IE GWSQ IW AMQ +L QR EQ
Sbjct: 88 DDFFASLDTEKFNLKLPSEVDEYYKIKEKCESAGWEPGSKPATPQEAANGPHRVMAQALMKRAIADIPILQHIQKESPGMNKLYSQSMCSEKQWRAYQKAEALVSAEVDEVRRESDQIEPGWSQMIWRQAMQYHQMLKQRHEQ 230
BLAST of mRNA_P-canaliculata_contig10060.136.1 vs. uniprot
Match: K0T2G4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T2G4_THAOC) HSP 1 Score: 107 bits (266), Expect = 3.000e-22 Identity = 59/144 (40.97%), Postives = 84/144 (58.33%), Query Frame = 1 Query: 115 DDFFADLGISYKDFDMPDEVDDYYEAKEN---------PAIAKDIPK-----LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQMAETMISEEIESVQTEADEIESGWSQSIWPLAMQLRTLLVQRREQAEA 504
DDFF++L + +P VD+YYE K +A P L AL+KR IADIPI+ +Q E G+ +Y Q+M K+W ++Q AE M+S E+E V+ EADEIE GWSQ++W AMQ ++ Q+ EQA++
Sbjct: 77 DDFFSNLDGDKFNIKLPSAVDEYYEVKAKCESDGWEPGQPMANGQPTNHHRLLAQALMKRCIADIPIVTHIQKESQGMNKLYSQSMCSVKQWKSYQAAEAMVSAEVEEVRAEADEIEPGWSQAVWRQAMQYHNMIKQKEEQAKS 220
BLAST of mRNA_P-canaliculata_contig10060.136.1 vs. uniprot
Match: A0A7S2S0P4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S0P4_9STRA) HSP 1 Score: 104 bits (260), Expect = 1.200e-21 Identity = 70/180 (38.89%), Postives = 99/180 (55.00%), Query Frame = 1 Query: 10 DPSVFDIKMVMGVLVVVALVAYAVFRLFVRRVVGEDD---FFADLGISYKDFDMPDEVDDYYEAKE--------------NPAIAKDIPK--LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQMAETMISEEIESVQTEADEIESGWSQSIWPLAMQLRTLLVQRRE 492
DP+++ +V+GVL +V + + L+ RR +DD FF+DL + ++P VD+YYE K+ N A P L AL+KR IADIP++ +Q E G+ +Y Q+M K+W +Q AE M+S E+E V+ EADEIE GWSQ IW AMQ +L R E
Sbjct: 48 DPAIY---LVLGVLAMVLIWYF----LYSRRSKKDDDDFAFFSDLDGEKFNLNLPAAVDEYYEVKDKCEDNGWEPGKPPTNQQEAASGPHRVLAQALMKRCIADIPLVTHIQKESAGMNKLYSQSMCSVKQWKTYQAAEAMVSAEVEEVRAEADEIEPGWSQVIWRQAMQYHNMLKNRHE 220
BLAST of mRNA_P-canaliculata_contig10060.136.1 vs. uniprot
Match: A0A448YU82_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YU82_9STRA) HSP 1 Score: 103 bits (257), Expect = 2.330e-21 Identity = 62/147 (42.18%), Postives = 84/147 (57.14%), Query Frame = 1 Query: 109 GEDDFFADLGISYKDFD--MPDEVDDYYEAKENPAIAKDIPK--------------LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQMAETMISEEIESVQTEADEIESGWSQSIWPLAMQLRTLLVQRREQAE 501
EDD+F+ SY+ F+ +P EVD+YY KE A P + AL+KRAI DIPI+ +Q E G+ +Y Q+M +W A+Q AETM+S E++ V+ EADEIE GWSQ IW AMQ +L Q+ EQ +
Sbjct: 69 NEDDYFS----SYEKFNIKLPAEVDEYYSVKEKCMKAGWEPGKPPTDKNPNGPHRVMAQALMKRAIGDIPIVTFIQKESAGMNKLYSQSMCSVSQWRAYQNAETMVSTEVDEVRAEADEIEPGWSQVIWRQAMQYHGMLKQKHEQEQ 211
BLAST of mRNA_P-canaliculata_contig10060.136.1 vs. uniprot
Match: B8C1S0_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1S0_THAPS) HSP 1 Score: 103 bits (258), Expect = 2.590e-21 Identity = 68/179 (37.99%), Postives = 99/179 (55.31%), Query Frame = 1 Query: 10 DPSVFDIKMVMGVLVVVALVAYAVFRLFVRRVVGE-DDFFADLGISYKDFDMPDEVDDYYEAKEN-------PAIAKDIPK-------LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQMAETMISEEIESVQTEADEIESGWSQSIWPLAMQLRTLLVQRREQAE 501
DP++F + V+ VV + V R+ +R + DDFF++L + +P VD+YY+ K P A + L AL+KR IADIPI+ +Q E G+ +Y Q+M K+W ++Q AE M+S E+E V+ EADE+E GWSQ IW AMQ +L Q+ EQA+
Sbjct: 56 DPALFLLLAVVAFAVV-----FIVLRIRRKRASADVDDFFSNLDGDKFNLRLPAAVDEYYDVKAKAEEEGWEPGQAAQGKQPSAQHRALAQALMKRCIADIPIVTFIQRESAGMNKLYSQSMCSVKQWKSYQAAEAMVSAEVEEVRAEADEVEPGWSQVIWRQAMQYHNMLKQKEEQAK 229
BLAST of mRNA_P-canaliculata_contig10060.136.1 vs. uniprot
Match: A0A6U3U3N1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3U3N1_9STRA) HSP 1 Score: 102 bits (255), Expect = 5.890e-21 Identity = 63/158 (39.87%), Postives = 85/158 (53.80%), Query Frame = 1 Query: 82 FRLFVRRVVGEDD---FFADLGISYKDFDMPDEVDDYYEAKENPAIAKDIPK------------------LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQMAETMISEEIESVQTEADEIESGWSQSIWPLAMQLRTLLVQRRE 492
F ++ RR +DD FF++L + +P VD+YYE K A P L AL+KR IADIPI+ +Q E PG+ +Y Q+M K+W ++Q AE M+S E++ V+ EADEIE GWSQ IW AMQ +L QR E
Sbjct: 63 FFIWYRRKKAQDDSNNFFSELDGEKFNLKLPAAVDEYYEVKAKCEEAGWEPGQGAGQGAAAANANGPHRVLAQALMKRCIADIPIVTHIQKESPGMNKLYSQSMCSVKQWRSYQAAEAMVSAEVDEVRAEADEIEPGWSQVIWRQAMQYHNMLKQRHE 220
BLAST of mRNA_P-canaliculata_contig10060.136.1 vs. uniprot
Match: B7FT11_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FT11_PHATC) HSP 1 Score: 102 bits (255), Expect = 1.050e-20 Identity = 57/127 (44.88%), Postives = 75/127 (59.06%), Query Frame = 1 Query: 160 MPDEVDDYYEAKE--------------NPAIAKDIPK-LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQMAETMISEEIESVQTEADEIESGWSQSIWPLAMQLRTLLVQRREQ 495
+P EVD+YY KE NPA A + L AL+KRAIADIPI+ +Q E G+ +Y Q+M +W ++Q AE ++S E+E V+ EADEIE GWSQ IW AMQ +L Q+ EQ
Sbjct: 131 LPGEVDEYYAVKEKCESMGWEPGQTAQNPAQASPAHRALAQALMKRAIADIPIVTHIQKESSGMNKLYSQSMCSVNQWRSYQAAEQLVSTEVEEVRAEADEIEPGWSQVIWRQAMQYHQMLKQKHEQ 257 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10060.136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10060.136.1 >prot_P-canaliculata_contig10060.136.1 ID=prot_P-canaliculata_contig10060.136.1|Name=mRNA_P-canaliculata_contig10060.136.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=232bp MFDPSVFDIKMVMGVLVVVALVAYAVFRLFVRRVVGEDDFFADLGISYKDback to top mRNA from alignment at P-canaliculata_contig10060:5993..10827- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10060.136.1 ID=mRNA_P-canaliculata_contig10060.136.1|Name=mRNA_P-canaliculata_contig10060.136.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4835bp|location=Sequence derived from alignment at P-canaliculata_contig10060:5993..10827- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10060:5993..10827- >mRNA_P-canaliculata_contig10060.136.1 ID=mRNA_P-canaliculata_contig10060.136.1|Name=mRNA_P-canaliculata_contig10060.136.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1392bp|location=Sequence derived from alignment at P-canaliculata_contig10060:5993..10827- (Pelvetia canaliculata dioecious)back to top |