Homology
BLAST of mRNA_P-canaliculata_contig100598.124.1 vs. uniprot
Match:
A0A7W6EIH7_9HYPH (Uncharacterized protein n=1 Tax=Pseudochelatococcus contaminans TaxID=1538103 RepID=A0A7W6EIH7_9HYPH)
HSP 1 Score: 55.5 bits (132), Expect = 4.070e-5
Identity = 59/251 (23.51%), Postives = 106/251 (42.23%), Query Frame = 1
Query: 67 LVERVPAGREVVEKLLSSDTDPYVSAVLNQESIVGSMFGKDQFEDGSFSKATLITDSEKFELKEDGCAELMALSESVWRAGSTSSLIQKKFIDRAFFDWV--ALKPRDCKVEFVEFLDIEVEAAVQECKVLIPLHRVRSTVRFRI-------LGCLVRE---VNGGDVEQWFPSEKDAEYAVKMRRSLQGFCCVEVELSAEPSYAAEEALRIANIIASMIAMHSLTGVILGARYNGVPLGREITPTSTAIV 783
LV ++ A R S + + +A + + +V + Q DG A + TD+ + L ED + + L++ V + + + FI + F W A D + + + L V+ C+VL P+ + F++ LG + E GG+ ++ DA ++M R G + +EL AEP +A E+AL IA +++ + ++ +G EI P+S IV
Sbjct: 275 LVSKIRALRFAARPSPSFPSQRHAAATITPDDLVDTPVFTGQDADGMRVVAFIHTDTTPYGLAEDDFSGVATLADLVRETPWAAQSLGQSFIQQTFIIWARSAFSGSDAE-SYSDALSAAARNTVRTCRVLAPVAYLEVQSAFQLGPVAIEPLGIQLIEDFRSRGGEPSPEQAADVDA-LLLQMERDFVGHAAIAIELIAEPHFAQEKALLIAQDCVALLRVFCPESIVAALLCPMALMGAEIMPSSKLIV 523
BLAST of mRNA_P-canaliculata_contig100598.124.1 vs. uniprot
Match:
A0A119UPA4_9BURK (Uncharacterized protein n=3 Tax=Burkholderia ubonensis TaxID=101571 RepID=A0A119UPA4_9BURK)
HSP 1 Score: 55.1 bits (131), Expect = 5.370e-5
Identity = 48/193 (24.87%), Postives = 83/193 (43.01%), Query Frame = 1
Query: 232 DSEKFELKEDGCAELMALSESVWRAGSTSSLIQKKFIDRAFFDWVALKPRDCKVEFVEFLDIEVEAAVQECKVLIPLHRVR-------STVRFRILGCLVREVNGGDVEQWFPSEKD--AEYAVKMRRSLQGFCCVEVELSAEPSYAAEEALRIANIIASMIAMHSLTGVILGARYNGVPL-GREITPTSTAI 780
+ + + L E+ L +L+++V +A + + +KF++ AFFDW + ++ F E L V +V P+ + VR + V E P ++ ++ K+R +QG+ V + AEP++A E ALRIA ++ S ++ V L G E PTS I
Sbjct: 292 EGKSYGLVENDYKSLDSLTDAVLKAAWARTSLSRKFVETAFFDWARQQFPAAQLSFPEALSDAARDTVTNVEVWAPIANMEVEQGFDFGPVRIESMTAAVMENLRSRAPSPRPEQQQEVGQFFEKLRGEIQGYAAAVVSIEAEPAFAVERALRIAQDAVGLLTFFS-PAAPRSYLFSPVALAGAEYIPTSKLI 483
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100598.124.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 4.07e-5 / Id = 23.51 Expect = 5.37e-5 / Id = 24.87 Sequence A0A7W6EIH7_9HYPH A0A119UPA4_9BURK back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 786 Cds size 786 Stop 0 Start 1
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815579.432656-CDS-P-canaliculata_contig100598:20..806 1622815579.432656-CDS-P-canaliculata_contig100598:20..806 Pelvetia canaliculata dioecious CDS P-canaliculata_contig100598 21..806 - 1693494148.2949722-CDS-P-canaliculata_contig100598:20..806 1693494148.2949722-CDS-P-canaliculata_contig100598:20..806 Pelvetia canaliculata dioecious CDS P-canaliculata_contig100598 21..806 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100598.124.1
>prot_P-canaliculata_contig100598.124.1 ID=prot_P-canaliculata_contig100598.124.1|Name=mRNA_P-canaliculata_contig100598.124.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=262bp
MSLDLHQNAVAAFNTRANHIASLVERVPAGREVVEKLLSSDTDPYVSAVL back to top mRNA from alignment at P-canaliculata_contig100598:21..806-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100598.124.1 ID=mRNA_P-canaliculata_contig100598.124.1|Name=mRNA_P-canaliculata_contig100598.124.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=786bp|location=Sequence derived from alignment at P-canaliculata_contig100598:21..806- (Pelvetia canaliculata dioecious)ATGAGCCTAGATCTCCATCAAAACGCGGTGGCTGCTTTCAATACAAGAGC
CAATCACATAGCGAGTCTGGTTGAGCGTGTTCCTGCAGGCAGAGAAGTCG
TAGAAAAACTGCTGTCGTCCGATACGGATCCATACGTATCCGCAGTTCTT
AATCAAGAGAGCATCGTAGGGTCGATGTTCGGGAAGGATCAATTCGAGGA
CGGTTCATTCAGCAAGGCTACGCTAATCACAGACAGCGAGAAATTTGAGT
TAAAAGAAGATGGCTGCGCCGAGCTGATGGCGTTGTCCGAATCTGTTTGG
AGGGCAGGATCAACGTCGAGTTTGATTCAAAAAAAGTTTATTGATCGCGC
GTTTTTCGATTGGGTCGCGCTGAAGCCAAGAGACTGCAAGGTTGAGTTTG
TAGAATTTTTAGACATAGAAGTAGAGGCAGCTGTTCAAGAATGTAAAGTG
CTGATCCCTCTTCACCGAGTTCGAAGCACCGTTCGTTTTAGAATACTTGG
ATGTTTAGTGCGTGAAGTTAATGGCGGTGACGTTGAGCAATGGTTTCCCT
CAGAGAAGGACGCAGAGTACGCGGTAAAGATGCGTCGGTCACTACAGGGA
TTCTGCTGCGTTGAGGTCGAACTAAGTGCCGAGCCGAGCTATGCAGCGGA
GGAGGCCCTTCGGATCGCAAACATCATAGCTTCGATGATTGCGATGCATT
CACTGACTGGAGTAATTCTTGGGGCTCGATACAACGGCGTTCCCTTAGGT
CGAGAAATAACTCCAACATCCACAGCTATCGTGTTC back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100598:21..806-
>mRNA_P-canaliculata_contig100598.124.1 ID=mRNA_P-canaliculata_contig100598.124.1|Name=mRNA_P-canaliculata_contig100598.124.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1572bp|location=Sequence derived from alignment at P-canaliculata_contig100598:21..806- (Pelvetia canaliculata dioecious) back to top