mRNA_P-canaliculata_contig100598.124.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig100598.124.1 vs. uniprot
Match: A0A7W6EIH7_9HYPH (Uncharacterized protein n=1 Tax=Pseudochelatococcus contaminans TaxID=1538103 RepID=A0A7W6EIH7_9HYPH) HSP 1 Score: 55.5 bits (132), Expect = 4.070e-5 Identity = 59/251 (23.51%), Postives = 106/251 (42.23%), Query Frame = 1 Query: 67 LVERVPAGREVVEKLLSSDTDPYVSAVLNQESIVGSMFGKDQFEDGSFSKATLITDSEKFELKEDGCAELMALSESVWRAGSTSSLIQKKFIDRAFFDWV--ALKPRDCKVEFVEFLDIEVEAAVQECKVLIPLHRVRSTVRFRI-------LGCLVRE---VNGGDVEQWFPSEKDAEYAVKMRRSLQGFCCVEVELSAEPSYAAEEALRIANIIASMIAMHSLTGVILGARYNGVPLGREITPTSTAIV 783
LV ++ A R S + + +A + + +V + Q DG A + TD+ + L ED + + L++ V + + + FI + F W A D + + + L V+ C+VL P+ + F++ LG + E GG+ ++ DA ++M R G + +EL AEP +A E+AL IA +++ + ++ +G EI P+S IV
Sbjct: 275 LVSKIRALRFAARPSPSFPSQRHAAATITPDDLVDTPVFTGQDADGMRVVAFIHTDTTPYGLAEDDFSGVATLADLVRETPWAAQSLGQSFIQQTFIIWARSAFSGSDAE-SYSDALSAAARNTVRTCRVLAPVAYLEVQSAFQLGPVAIEPLGIQLIEDFRSRGGEPSPEQAADVDA-LLLQMERDFVGHAAIAIELIAEPHFAQEKALLIAQDCVALLRVFCPESIVAALLCPMALMGAEIMPSSKLIV 523
BLAST of mRNA_P-canaliculata_contig100598.124.1 vs. uniprot
Match: A0A119UPA4_9BURK (Uncharacterized protein n=3 Tax=Burkholderia ubonensis TaxID=101571 RepID=A0A119UPA4_9BURK) HSP 1 Score: 55.1 bits (131), Expect = 5.370e-5 Identity = 48/193 (24.87%), Postives = 83/193 (43.01%), Query Frame = 1 Query: 232 DSEKFELKEDGCAELMALSESVWRAGSTSSLIQKKFIDRAFFDWVALKPRDCKVEFVEFLDIEVEAAVQECKVLIPLHRVR-------STVRFRILGCLVREVNGGDVEQWFPSEKD--AEYAVKMRRSLQGFCCVEVELSAEPSYAAEEALRIANIIASMIAMHSLTGVILGARYNGVPL-GREITPTSTAI 780
+ + + L E+ L +L+++V +A + + +KF++ AFFDW + ++ F E L V +V P+ + VR + V E P ++ ++ K+R +QG+ V + AEP++A E ALRIA ++ S ++ V L G E PTS I
Sbjct: 292 EGKSYGLVENDYKSLDSLTDAVLKAAWARTSLSRKFVETAFFDWARQQFPAAQLSFPEALSDAARDTVTNVEVWAPIANMEVEQGFDFGPVRIESMTAAVMENLRSRAPSPRPEQQQEVGQFFEKLRGEIQGYAAAVVSIEAEPAFAVERALRIAQDAVGLLTFFS-PAAPRSYLFSPVALAGAEYIPTSKLI 483 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100598.124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100598.124.1 >prot_P-canaliculata_contig100598.124.1 ID=prot_P-canaliculata_contig100598.124.1|Name=mRNA_P-canaliculata_contig100598.124.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=262bp MSLDLHQNAVAAFNTRANHIASLVERVPAGREVVEKLLSSDTDPYVSAVLback to top mRNA from alignment at P-canaliculata_contig100598:21..806- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100598.124.1 ID=mRNA_P-canaliculata_contig100598.124.1|Name=mRNA_P-canaliculata_contig100598.124.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=786bp|location=Sequence derived from alignment at P-canaliculata_contig100598:21..806- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100598:21..806- >mRNA_P-canaliculata_contig100598.124.1 ID=mRNA_P-canaliculata_contig100598.124.1|Name=mRNA_P-canaliculata_contig100598.124.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1572bp|location=Sequence derived from alignment at P-canaliculata_contig100598:21..806- (Pelvetia canaliculata dioecious)back to top |