mRNA_P-canaliculata_contig10051.113.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: D7FV42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV42_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.050e-38
Identity = 67/128 (52.34%), Postives = 93/128 (72.66%), Query Frame = 3

Query:   21 CSLCAETGV-RGGAMKMVTP-GVERSRHWVHVCCTMWIPEVFVGSDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGNLNVYCRKHIADIKVPLDL 398
            C LC ET + +GGAMK V   G    + WVHV C++WIPEV   S+EL PV+L+++ K RK LKC+LCG++G CVQCAGGRCL++YHPWCL+H+D    ++ RS+  + +L+V+C+ H AD+   LDL
Sbjct:   58 CELCKETNLSKGGAMKQVLGNGKNGEKLWVHVSCSLWIPEVRFTSEELNPVNLDFIEKSRKILKCLLCGQKGTCVQCAGGRCLLSYHPWCLIHSD--RGIINRSISVQSHLHVFCQDHKADVISSLDL 183

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BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A6H5LHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHH7_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.010e-33
Identity = 56/107 (52.34%), Postives = 80/107 (74.77%), Query Frame = 3

Query:   78 GVERSRHWVHVCCTMWIPEVFVGSDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGNLNVYCRKHIADIKVPLDL 398
            G    + WVHV C++WIPEV   S+EL PV+L+++ K RK LKC+LCG++G CVQCAGGRCL++YHPWCL+H+D    ++ RS+  + +L+V+C+ H AD+   LDL
Sbjct:    8 GKNGEKLWVHVSCSLWIPEVRFTSEELNPVNLDFIEKSRKILKCLLCGQKGTCVQCAGGRCLLSYHPWCLIHSD--RGIINRSISVQSHLHVFCQDHKADVISSLDL 112

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BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A482RWD5_9ARCH (PHD-type domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWD5_9ARCH)

HSP 1 Score: 88.2 bits (217), Expect = 9.070e-19
Identity = 42/129 (32.56%), Postives = 70/129 (54.26%), Query Frame = 3

Query:   15 LACSLCAETGVRGGAMKMVTPGVERSRHWVHVCCTMWIPEVFVG--SDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDTK-NSLLFRSLDTKGNLNVYCRKHIADIKVPL 392
            ++C LC+    +GGA K +    ++   W H  C+ WIPE++    ++++  ++   +   R  LKC LC ++G CVQC+ GRC++A HPWC LHT       + R  D      ++CR H + +  P+
Sbjct:   67 VSCELCS---YKGGAYKPI----DKPHKWAHPLCSTWIPELYEEHKANKVPIINTSKLDSKRFKLKCALCKQKGACVQCSSGRCVIAAHPWCALHTPQGFTRRIVRGPDDLPLWQIFCRTHASGVSEPV 188

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BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A1I8Q367_STOCA (Uncharacterized protein n=2 Tax=Stomoxys calcitrans TaxID=35570 RepID=A0A1I8Q367_STOCA)

HSP 1 Score: 84.7 bits (208), Expect = 1.800e-16
Identity = 50/125 (40.00%), Postives = 66/125 (52.80%), Query Frame = 3

Query:   21 CSLCAETGVRGGAMKMVTPGVERSRHWVHVCCTMWIPEVFVGS-DELEPV-HLEYVPKDRKTLKCVLC-GKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGN------LNVYCRKH 368
            C LC     +GGAMK    G    +HW HV C +WIPEV +G  D +EP+  +  +P  R +L CVLC GK G C+QC+   C  AYH  C      ++ L  R++  +GN      L  YC KH
Sbjct:  404 CVLCPN---KGGAMKSTKSG----KHWAHVSCALWIPEVSIGCVDRMEPITKISSIPPSRWSLVCVLCRGKVGACIQCSVKTCKTAYHVTCAF----QHGLEMRAIIEEGNAEDGVKLRSYCHKH 517

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BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A1I8M680_MUSDO (Uncharacterized protein n=1 Tax=Musca domestica TaxID=7370 RepID=A0A1I8M680_MUSDO)

HSP 1 Score: 84.3 bits (207), Expect = 2.450e-16
Identity = 49/125 (39.20%), Postives = 67/125 (53.60%), Query Frame = 3

Query:   21 CSLCAETGVRGGAMKMVTPGVERSRHWVHVCCTMWIPEVFVGS-DELEPV-HLEYVPKDRKTLKCVLC-GKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGN------LNVYCRKH 368
            C LC     +GGAMK    G    +HW HV C +WIPEV +G  D +EP+  +  +P+ R +L CVLC G+ G C+QC+   C  AYH  C      ++ L  R++  +GN      L  YC KH
Sbjct:  397 CVLCPN---KGGAMKSTKSG----KHWAHVSCALWIPEVSIGCVDRMEPITKISSIPQSRWSLVCVLCRGRVGACIQCSVKTCKTAYHVTCAF----QHGLEMRAIIEEGNAEDGVKLRSYCHKH 510

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BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A0P1AX52_PLAHL (Kinesin-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AX52_PLAHL)

HSP 1 Score: 84.0 bits (206), Expect = 3.230e-16
Identity = 41/120 (34.17%), Postives = 66/120 (55.00%), Query Frame = 3

Query:   30 CAETGVRGGAMKMVTPGVERSRHWVHVCCTMWIPEVF---VGSDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGNLNVYCRKHIADI 380
            CA   + GGA+++     ++   W HV C  WIPE++    G+ + E V +  + K R TL+C++CG RG C+QC  GRC  A+H  C     +  S+LF   + +     +CR H++D+
Sbjct:   58 CAVCPIAGGALRLT----DQCDVWCHVLCLNWIPELYHSLTGAMD-EAVQIALLDKSRSTLRCLICGLRGGCIQCVSGRCAKAFHVLCAFRAPS--SILFTGYNLQNQQVYHCRTHLSDV 170

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BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A5D6XI01_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XI01_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.290e-16
Identity = 43/120 (35.83%), Postives = 70/120 (58.33%), Query Frame = 3

Query:   30 CAETGVRGGAMKMVT-PGVERSRHWVHVCCTMWIPEVFVG-SDEL-EPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGNLNVYCRKHIADI 380
            C    V GGA++  + PGV     WVHV C  WIPE+    + EL + V++  + + R+TL+C++CG+RG C+QC  GRC  A+H  C + + +  +L+F   +       +C+ H+AD+
Sbjct:   95 CVVCPVEGGALRRTSQPGV-----WVHVLCVNWIPELSHSLTGELNQAVNIALLDRSRETLRCLVCGQRGGCIQCVSGRCARAFHVLCAIRSPS--TLIFTGYNGANQQVYHCKAHLADV 207

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BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A1B0GCQ2_GLOMM (Uncharacterized protein n=6 Tax=Glossina TaxID=7393 RepID=A0A1B0GCQ2_GLOMM)

HSP 1 Score: 84.0 bits (206), Expect = 3.340e-16
Identity = 50/125 (40.00%), Postives = 66/125 (52.80%), Query Frame = 3

Query:   21 CSLCAETGVRGGAMKMVTPGVERSRHWVHVCCTMWIPEVFVGS-DELEPV-HLEYVPKDRKTLKCVLCGKR-GVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGN------LNVYCRKH 368
            C LC     +GGAMK    G    RHW HV C +WIPEV +G  D +EP+  +  +P+ R  L CVLC +R G C+QC+   C  AYH  C      ++ L  R++  +GN      L  YC KH
Sbjct:  348 CVLCPN---KGGAMKSTKSG----RHWAHVSCALWIPEVSIGCVDRMEPITKISSIPQSRWHLLCVLCRERIGACIQCSVKTCKTAYHVTCAF----QHGLEMRAIIEEGNAEDGVKLRSYCHKH 461

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BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A833WFP8_PHYIN (PHD-zinc-finger like domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WFP8_PHYIN)

HSP 1 Score: 83.6 bits (205), Expect = 4.410e-16
Identity = 40/119 (33.61%), Postives = 65/119 (54.62%), Query Frame = 3

Query:   30 CAETGVRGGAMKMVTPGVERSRHWVHVCCTMWIPEVFVGSDEL--EPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGNLNVYCRKHIADI 380
            CA   + GGA+++     ++   W HV C  WIPE++     +  E V +    K R TL+CV+CG RG C+QC  GRC  A+H  C   + +  SL+F   +++     +C+ H++D+
Sbjct:   74 CAVCPIAGGALRLT----DQRDVWCHVLCINWIPELYHSLTGVMDEAVKISLYEKSRSTLRCVICGVRGGCIQCVSGRCAKAFHVVCAFRSPS--SLVFTGYNSQNQQVYHCKTHLSDV 186

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BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: D0MU88_PHYIT (Kinesin-like protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MU88_PHYIT)

HSP 1 Score: 83.6 bits (205), Expect = 4.500e-16
Identity = 40/119 (33.61%), Postives = 65/119 (54.62%), Query Frame = 3

Query:   30 CAETGVRGGAMKMVTPGVERSRHWVHVCCTMWIPEVFVGSDEL--EPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGNLNVYCRKHIADI 380
            CA   + GGA+++     ++   W HV C  WIPE++     +  E V +    K R TL+CV+CG RG C+QC  GRC  A+H  C   + +  SL+F   +++     +C+ H++D+
Sbjct:   74 CAVCPIAGGALRLT----DQRDVWCHVLCINWIPELYHSLTGVMDEAVKISLYEKSRSTLRCVICGVRGGCIQCVSGRCAKAFHVVCAFRSPS--SLVFTGYNSQNQQVYHCKTHLSDV 186

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
D7FV42_ECTSI	1.050e-38	52.34	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5LHH7_9PHAE	1.010e-33	52.34	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A482RWD5_9ARCH	9.070e-19	32.56	PHD-type domain-containing protein (Fragment) n=1 ...	[more]
A0A1I8Q367_STOCA	1.800e-16	40.00	Uncharacterized protein n=2 Tax=Stomoxys calcitran...	[more]
A0A1I8M680_MUSDO	2.450e-16	39.20	Uncharacterized protein n=1 Tax=Musca domestica Ta...	[more]
A0A0P1AX52_PLAHL	3.230e-16	34.17	Kinesin-like protein n=1 Tax=Plasmopara halstedii ...	[more]
A0A5D6XI01_9STRA	3.290e-16	35.83	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]
A0A1B0GCQ2_GLOMM	3.340e-16	40.00	Uncharacterized protein n=6 Tax=Glossina TaxID=739...	[more]
A0A833WFP8_PHYIN	4.410e-16	33.61	PHD-zinc-finger like domain n=1 Tax=Phytophthora i...	[more]
D0MU88_PHYIT	4.500e-16	33.61	Kinesin-like protein n=1 Tax=Phytophthora infestan...	[more]

Pages

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig10051.113.1	prot_P-canaliculata_contig10051.113.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig10051 7737..11043 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815578.7438695-UTR-P-canaliculata_contig10051:7717..7736	1622815578.7438695-UTR-P-canaliculata_contig10051:7717..7736	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig10051 7718..7736 +
1693494147.958851-UTR-P-canaliculata_contig10051:7717..7736	1693494147.958851-UTR-P-canaliculata_contig10051:7717..7736	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig10051 7718..7736 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815578.754612-CDS-P-canaliculata_contig10051:7736..7851	1622815578.754612-CDS-P-canaliculata_contig10051:7736..7851	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig10051 7737..7851 +
1693494147.97346-CDS-P-canaliculata_contig10051:7736..7851	1693494147.97346-CDS-P-canaliculata_contig10051:7736..7851	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig10051 7737..7851 +
1622815578.769549-CDS-P-canaliculata_contig10051:10431..10647	1622815578.769549-CDS-P-canaliculata_contig10051:10431..10647	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig10051 10432..10647 +
1693494147.9825861-CDS-P-canaliculata_contig10051:10431..10647	1693494147.9825861-CDS-P-canaliculata_contig10051:10431..10647	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig10051 10432..10647 +
1622815578.782347-CDS-P-canaliculata_contig10051:10990..11043	1622815578.782347-CDS-P-canaliculata_contig10051:10990..11043	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig10051 10991..11043 +
1693494147.9924657-CDS-P-canaliculata_contig10051:10990..11043	1693494147.9924657-CDS-P-canaliculata_contig10051:10990..11043	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig10051 10991..11043 +