mRNA_P-canaliculata_contig10051.113.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: D7FV42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV42_ECTSI) HSP 1 Score: 148 bits (373), Expect = 1.050e-38 Identity = 67/128 (52.34%), Postives = 93/128 (72.66%), Query Frame = 3 Query: 21 CSLCAETGV-RGGAMKMVTP-GVERSRHWVHVCCTMWIPEVFVGSDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGNLNVYCRKHIADIKVPLDL 398
C LC ET + +GGAMK V G + WVHV C++WIPEV S+EL PV+L+++ K RK LKC+LCG++G CVQCAGGRCL++YHPWCL+H+D ++ RS+ + +L+V+C+ H AD+ LDL
Sbjct: 58 CELCKETNLSKGGAMKQVLGNGKNGEKLWVHVSCSLWIPEVRFTSEELNPVNLDFIEKSRKILKCLLCGQKGTCVQCAGGRCLLSYHPWCLIHSD--RGIINRSISVQSHLHVFCQDHKADVISSLDL 183
BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A6H5LHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHH7_9PHAE) HSP 1 Score: 134 bits (336), Expect = 1.010e-33 Identity = 56/107 (52.34%), Postives = 80/107 (74.77%), Query Frame = 3 Query: 78 GVERSRHWVHVCCTMWIPEVFVGSDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGNLNVYCRKHIADIKVPLDL 398
G + WVHV C++WIPEV S+EL PV+L+++ K RK LKC+LCG++G CVQCAGGRCL++YHPWCL+H+D ++ RS+ + +L+V+C+ H AD+ LDL
Sbjct: 8 GKNGEKLWVHVSCSLWIPEVRFTSEELNPVNLDFIEKSRKILKCLLCGQKGTCVQCAGGRCLLSYHPWCLIHSD--RGIINRSISVQSHLHVFCQDHKADVISSLDL 112
BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A482RWD5_9ARCH (PHD-type domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWD5_9ARCH) HSP 1 Score: 88.2 bits (217), Expect = 9.070e-19 Identity = 42/129 (32.56%), Postives = 70/129 (54.26%), Query Frame = 3 Query: 15 LACSLCAETGVRGGAMKMVTPGVERSRHWVHVCCTMWIPEVFVG--SDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDTK-NSLLFRSLDTKGNLNVYCRKHIADIKVPL 392
++C LC+ +GGA K + ++ W H C+ WIPE++ ++++ ++ + R LKC LC ++G CVQC+ GRC++A HPWC LHT + R D ++CR H + + P+
Sbjct: 67 VSCELCS---YKGGAYKPI----DKPHKWAHPLCSTWIPELYEEHKANKVPIINTSKLDSKRFKLKCALCKQKGACVQCSSGRCVIAAHPWCALHTPQGFTRRIVRGPDDLPLWQIFCRTHASGVSEPV 188
BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A1I8Q367_STOCA (Uncharacterized protein n=2 Tax=Stomoxys calcitrans TaxID=35570 RepID=A0A1I8Q367_STOCA) HSP 1 Score: 84.7 bits (208), Expect = 1.800e-16 Identity = 50/125 (40.00%), Postives = 66/125 (52.80%), Query Frame = 3 Query: 21 CSLCAETGVRGGAMKMVTPGVERSRHWVHVCCTMWIPEVFVGS-DELEPV-HLEYVPKDRKTLKCVLC-GKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGN------LNVYCRKH 368
C LC +GGAMK G +HW HV C +WIPEV +G D +EP+ + +P R +L CVLC GK G C+QC+ C AYH C ++ L R++ +GN L YC KH
Sbjct: 404 CVLCPN---KGGAMKSTKSG----KHWAHVSCALWIPEVSIGCVDRMEPITKISSIPPSRWSLVCVLCRGKVGACIQCSVKTCKTAYHVTCAF----QHGLEMRAIIEEGNAEDGVKLRSYCHKH 517
BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A1I8M680_MUSDO (Uncharacterized protein n=1 Tax=Musca domestica TaxID=7370 RepID=A0A1I8M680_MUSDO) HSP 1 Score: 84.3 bits (207), Expect = 2.450e-16 Identity = 49/125 (39.20%), Postives = 67/125 (53.60%), Query Frame = 3 Query: 21 CSLCAETGVRGGAMKMVTPGVERSRHWVHVCCTMWIPEVFVGS-DELEPV-HLEYVPKDRKTLKCVLC-GKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGN------LNVYCRKH 368
C LC +GGAMK G +HW HV C +WIPEV +G D +EP+ + +P+ R +L CVLC G+ G C+QC+ C AYH C ++ L R++ +GN L YC KH
Sbjct: 397 CVLCPN---KGGAMKSTKSG----KHWAHVSCALWIPEVSIGCVDRMEPITKISSIPQSRWSLVCVLCRGRVGACIQCSVKTCKTAYHVTCAF----QHGLEMRAIIEEGNAEDGVKLRSYCHKH 510
BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A0P1AX52_PLAHL (Kinesin-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AX52_PLAHL) HSP 1 Score: 84.0 bits (206), Expect = 3.230e-16 Identity = 41/120 (34.17%), Postives = 66/120 (55.00%), Query Frame = 3 Query: 30 CAETGVRGGAMKMVTPGVERSRHWVHVCCTMWIPEVF---VGSDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGNLNVYCRKHIADI 380
CA + GGA+++ ++ W HV C WIPE++ G+ + E V + + K R TL+C++CG RG C+QC GRC A+H C + S+LF + + +CR H++D+
Sbjct: 58 CAVCPIAGGALRLT----DQCDVWCHVLCLNWIPELYHSLTGAMD-EAVQIALLDKSRSTLRCLICGLRGGCIQCVSGRCAKAFHVLCAFRAPS--SILFTGYNLQNQQVYHCRTHLSDV 170
BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A5D6XI01_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XI01_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 3.290e-16 Identity = 43/120 (35.83%), Postives = 70/120 (58.33%), Query Frame = 3 Query: 30 CAETGVRGGAMKMVT-PGVERSRHWVHVCCTMWIPEVFVG-SDEL-EPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGNLNVYCRKHIADI 380
C V GGA++ + PGV WVHV C WIPE+ + EL + V++ + + R+TL+C++CG+RG C+QC GRC A+H C + + + +L+F + +C+ H+AD+
Sbjct: 95 CVVCPVEGGALRRTSQPGV-----WVHVLCVNWIPELSHSLTGELNQAVNIALLDRSRETLRCLVCGQRGGCIQCVSGRCARAFHVLCAIRSPS--TLIFTGYNGANQQVYHCKAHLADV 207
BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A1B0GCQ2_GLOMM (Uncharacterized protein n=6 Tax=Glossina TaxID=7393 RepID=A0A1B0GCQ2_GLOMM) HSP 1 Score: 84.0 bits (206), Expect = 3.340e-16 Identity = 50/125 (40.00%), Postives = 66/125 (52.80%), Query Frame = 3 Query: 21 CSLCAETGVRGGAMKMVTPGVERSRHWVHVCCTMWIPEVFVGS-DELEPV-HLEYVPKDRKTLKCVLCGKR-GVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGN------LNVYCRKH 368
C LC +GGAMK G RHW HV C +WIPEV +G D +EP+ + +P+ R L CVLC +R G C+QC+ C AYH C ++ L R++ +GN L YC KH
Sbjct: 348 CVLCPN---KGGAMKSTKSG----RHWAHVSCALWIPEVSIGCVDRMEPITKISSIPQSRWHLLCVLCRERIGACIQCSVKTCKTAYHVTCAF----QHGLEMRAIIEEGNAEDGVKLRSYCHKH 461
BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: A0A833WFP8_PHYIN (PHD-zinc-finger like domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WFP8_PHYIN) HSP 1 Score: 83.6 bits (205), Expect = 4.410e-16 Identity = 40/119 (33.61%), Postives = 65/119 (54.62%), Query Frame = 3 Query: 30 CAETGVRGGAMKMVTPGVERSRHWVHVCCTMWIPEVFVGSDEL--EPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGNLNVYCRKHIADI 380
CA + GGA+++ ++ W HV C WIPE++ + E V + K R TL+CV+CG RG C+QC GRC A+H C + + SL+F +++ +C+ H++D+
Sbjct: 74 CAVCPIAGGALRLT----DQRDVWCHVLCINWIPELYHSLTGVMDEAVKISLYEKSRSTLRCVICGVRGGCIQCVSGRCAKAFHVVCAFRSPS--SLVFTGYNSQNQQVYHCKTHLSDV 186
BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Match: D0MU88_PHYIT (Kinesin-like protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MU88_PHYIT) HSP 1 Score: 83.6 bits (205), Expect = 4.500e-16 Identity = 40/119 (33.61%), Postives = 65/119 (54.62%), Query Frame = 3 Query: 30 CAETGVRGGAMKMVTPGVERSRHWVHVCCTMWIPEVFVGSDEL--EPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDTKNSLLFRSLDTKGNLNVYCRKHIADI 380
CA + GGA+++ ++ W HV C WIPE++ + E V + K R TL+CV+CG RG C+QC GRC A+H C + + SL+F +++ +C+ H++D+
Sbjct: 74 CAVCPIAGGALRLT----DQRDVWCHVLCINWIPELYHSLTGVMDEAVKISLYEKSRSTLRCVICGVRGGCIQCVSGRCAKAFHVVCAFRSPS--SLVFTGYNSQNQQVYHCKTHLSDV 186 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10051.113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10051.113.1 >prot_P-canaliculata_contig10051.113.1 ID=prot_P-canaliculata_contig10051.113.1|Name=mRNA_P-canaliculata_contig10051.113.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=128bp MLAMRRDGGEGRSHENGHAWGGEVTSLGTRLLHHVDSRGVCRLRRAGASAback to top mRNA from alignment at P-canaliculata_contig10051:7718..11043+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10051.113.1 ID=mRNA_P-canaliculata_contig10051.113.1|Name=mRNA_P-canaliculata_contig10051.113.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3326bp|location=Sequence derived from alignment at P-canaliculata_contig10051:7718..11043+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10051:7718..11043+ >mRNA_P-canaliculata_contig10051.113.1 ID=mRNA_P-canaliculata_contig10051.113.1|Name=mRNA_P-canaliculata_contig10051.113.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at P-canaliculata_contig10051:7718..11043+ (Pelvetia canaliculata dioecious)back to top |