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Homology
BLAST of mRNA_P-canaliculata_contig100450.107.1 vs. uniprot
Match: A0A6B3LCC3_9BACT (Uncharacterized protein n=1 Tax=Sulfuriroseicoccus oceanibius TaxID=2707525 RepID=A0A6B3LCC3_9BACT) HSP 1 Score: 73.6 bits (179), Expect = 1.260e-11 Identity = 63/221 (28.51%), Postives = 98/221 (44.34%), Query Frame = 1 Query: 85 SKVKFILGVPEDFDPVKGCPVFVQWTTTDV-------KSNLKGAKNYRSSCNDKGWMLVSVD---GLP--DSGETWSNSVFYAGMKEFFEQLHAAYPSSTEWRVATGGFSGGAKICQWMGG--VMNELEGVNVMGYYIGGGNEVLFQYGIDDLGVSKKGYADAKAFVSSGDSDKFVSAHSRELVVEGCKEAGL-DVRDEVYTGGHRMNRDEFEKALDWFVE 702
+++K + +P+ FDP K P V W + + K N + +GW++V+ D G P + E S A E L A+P W+ A G SGG K + G ++N+L NV G ++ G N+ + K G K ++S+G SD + E V K ++R E++ GGH + ++EF KAL WFVE
Sbjct: 136 TELKISIALPKGFDPTK--PQRVMWVSAPINNENERKKGNAGAMWAFAGPGTAEGWVVVAADTDMGNPRVEDNER-SKGTDLAVHTAAVEALTEAWPQFKTWQFACCGGSGGGKASFYRVGDLLVNDL---NVTGMFLAGCNQDCTADARAETRFKKSGLRKIKVWISNGRSDTISNVGHAESVAASMKGNRYGEIRLELFDGGHVIKKEEFVKALQWFVE 350
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Bacteria |
| Seed ortholog score | 72.4 |
| Seed ortholog evalue | 3.2e-10 |
| Seed eggNOG ortholog | 452637.Oter_3771 |
| KEGG ko | ko:K06999 |
| EggNOG free text desc. | palmitoyl-(protein) hydrolase activity |
| EggNOG OGs | COG0400@1,COG0400@2 |
| COG Functional cat. | S |
| Best tax level | Bacteria |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 705 |
| Cds size | 705 |
| Stop | 1 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815577.9743009-CDS-P-canaliculata_contig100450:1..706 | 1622815577.9743009-CDS-P-canaliculata_contig100450:1..706 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig100450 2..706 + |
| 1693494147.4374502-CDS-P-canaliculata_contig100450:1..706 | 1693494147.4374502-CDS-P-canaliculata_contig100450:1..706 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig100450 2..706 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100450.107.1 >prot_P-canaliculata_contig100450.107.1 ID=prot_P-canaliculata_contig100450.107.1|Name=mRNA_P-canaliculata_contig100450.107.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=235bp
KGGEGWGTSFSSGYSGSWLRDLAEGHEVSKVKFILGVPEDFDPVKGCPVF
VQWTTTDVKSNLKGAKNYRSSCNDKGWMLVSVDGLPDSGETWSNSVFYAG
MKEFFEQLHAAYPSSTEWRVATGGFSGGAKICQWMGGVMNELEGVNVMGY
YIGGGNEVLFQYGIDDLGVSKKGYADAKAFVSSGDSDKFVSAHSRELVVE
GCKEAGLDVRDEVYTGGHRMNRDEFEKALDWFVE* back to topmRNA from alignment at P-canaliculata_contig100450:2..706+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig100450.107.1 ID=mRNA_P-canaliculata_contig100450.107.1|Name=mRNA_P-canaliculata_contig100450.107.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=705bp|location=Sequence derived from alignment at P-canaliculata_contig100450:2..706+ (Pelvetia canaliculata dioecious)
AAGGGCGGTGAGGGTTGGGGCACTTCTTTTTCTTCGGGCTACAGTGGGTC
TTGGCTGAGAGATCTTGCCGAGGGGCATGAGGTCTCGAAGGTGAAATTTA
TTCTAGGTGTTCCCGAGGATTTCGATCCCGTGAAAGGGTGTCCCGTTTTT
GTGCAATGGACGACTACGGACGTTAAAAGCAATTTGAAAGGAGCCAAGAA
TTATCGATCCAGTTGTAACGATAAGGGGTGGATGCTGGTCAGTGTCGATG
GCTTGCCGGATTCTGGCGAGACGTGGTCGAACTCGGTTTTCTATGCCGGG
ATGAAGGAGTTCTTCGAGCAGCTTCATGCGGCCTACCCTTCTTCTACCGA
ATGGCGTGTGGCCACCGGCGGCTTTTCGGGAGGAGCCAAGATTTGCCAAT
GGATGGGAGGCGTGATGAATGAGCTTGAGGGCGTGAATGTGATGGGTTAC
TACATCGGCGGCGGCAACGAGGTCCTATTTCAGTATGGCATAGATGATTT
AGGAGTTTCGAAAAAAGGCTATGCCGATGCCAAGGCTTTCGTCAGCAGTG
GAGATTCGGACAAGTTCGTCAGCGCCCACAGCCGGGAGCTCGTCGTTGAA
GGTTGCAAAGAAGCGGGGCTCGATGTTCGCGACGAGGTATATACAGGTGG
GCACCGCATGAACCGGGATGAATTTGAAAAGGCTTTGGATTGGTTCGTGG
AGTAG back to topCoding sequence (CDS) from alignment at P-canaliculata_contig100450:2..706+ >mRNA_P-canaliculata_contig100450.107.1 ID=mRNA_P-canaliculata_contig100450.107.1|Name=mRNA_P-canaliculata_contig100450.107.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at P-canaliculata_contig100450:2..706+ (Pelvetia canaliculata dioecious)
AAGGGCGGTGAGGGTTGGGGCACTTCTTTTTCTTCGGGCTACAGTGGGTC
TTGGCTGAGAGATCTTGCCGAGGGGCATGAGGTCTCGAAGGTGAAATTTA
TTCTAGGTGTTCCCGAGGATTTCGATCCCGTGAAAGGGTGTCCCGTTTTT
GTGCAATGGACGACTACGGACGTTAAAAGCAATTTGAAAGGAGCCAAGAA
TTATCGATCCAGTTGTAACGATAAGGGGTGGATGCTGGTCAGTGTCGATG
GCTTGCCGGATTCTGGCGAGACGTGGTCGAACTCGGTTTTCTATGCCGGG
ATGAAGGAGTTCTTCGAGCAGCTTCATGCGGCCTACCCTTCTTCTACCGA
ATGGCGTGTGGCCACCGGCGGCTTTTCGGGAGGAGCCAAGATTTGCCAAT
GGATGGGAGGCGTGATGAATGAGCTTGAGGGCGTGAATGTGATGGGTTAC
TACATCGGCGGCGGCAACGAGGTCCTATTTCAGTATGGCATAGATGATTT
AGGAGTTTCGAAAAAAGGCTATGCCGATGCCAAGGCTTTCGTCAGCAGTG
GAGATTCGGACAAGTTCGTCAGCGCCCACAGCCGGGAGCTCGTCGTTGAA
GGTTGCAAAGAAGCGGGGCTCGATGTTCGCGACGAGGTATATACAGGTGG
GCACCGCATGAACCGGGATGAATTTGAAAAGGCTTTGGATTGGTTCGTGG
AGTAGAAGGGCGGTGAGGGTTGGGGCACTTCTTTTTCTTCGGGCTACAGT
GGGTCTTGGCTGAGAGATCTTGCCGAGGGGCATGAGGTCTCGAAGGTGAA
ATTTATTCTAGGTGTTCCCGAGGATTTCGATCCCGTGAAAGGGTGTCCCG
TTTTTGTGCAATGGACGACTACGGACGTTAAAAGCAATTTGAAAGGAGCC
AAGAATTATCGATCCAGTTGTAACGATAAGGGGTGGATGCTGGTCAGTGT
CGATGGCTTGCCGGATTCTGGCGAGACGTGGTCGAACTCGGTTTTCTATG
CCGGGATGAAGGAGTTCTTCGAGCAGCTTCATGCGGCCTACCCTTCTTCT
ACCGAATGGCGTGTGGCCACCGGCGGCTTTTCGGGAGGAGCCAAGATTTG
CCAATGGATGGGAGGCGTGATGAATGAGCTTGAGGGCGTGAATGTGATGG
GTTACTACATCGGCGGCGGCAACGAGGTCCTATTTCAGTATGGCATAGAT
GATTTAGGAGTTTCGAAAAAAGGCTATGCCGATGCCAAGGCTTTCGTCAG
CAGTGGAGATTCGGACAAGTTCGTCAGCGCCCACAGCCGGGAGCTCGTCG
TTGAAGGTTGCAAAGAAGCGGGGCTCGATGTTCGCGACGAGGTATATACA
GGTGGGCACCGCATGAACCGGGATGAATTTGAAAAGGCTTTGGATTGGTT
CGTGGAGTAG back to top
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