mRNA_P-canaliculata_contig100450.107.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig100450.107.1 vs. uniprot
Match: A0A6B3LCC3_9BACT (Uncharacterized protein n=1 Tax=Sulfuriroseicoccus oceanibius TaxID=2707525 RepID=A0A6B3LCC3_9BACT) HSP 1 Score: 73.6 bits (179), Expect = 1.260e-11 Identity = 63/221 (28.51%), Postives = 98/221 (44.34%), Query Frame = 1 Query: 85 SKVKFILGVPEDFDPVKGCPVFVQWTTTDV-------KSNLKGAKNYRSSCNDKGWMLVSVD---GLP--DSGETWSNSVFYAGMKEFFEQLHAAYPSSTEWRVATGGFSGGAKICQWMGG--VMNELEGVNVMGYYIGGGNEVLFQYGIDDLGVSKKGYADAKAFVSSGDSDKFVSAHSRELVVEGCKEAGL-DVRDEVYTGGHRMNRDEFEKALDWFVE 702
+++K + +P+ FDP K P V W + + K N + +GW++V+ D G P + E S A E L A+P W+ A G SGG K + G ++N+L NV G ++ G N+ + K G K ++S+G SD + E V K ++R E++ GGH + ++EF KAL WFVE
Sbjct: 136 TELKISIALPKGFDPTK--PQRVMWVSAPINNENERKKGNAGAMWAFAGPGTAEGWVVVAADTDMGNPRVEDNER-SKGTDLAVHTAAVEALTEAWPQFKTWQFACCGGSGGGKASFYRVGDLLVNDL---NVTGMFLAGCNQDCTADARAETRFKKSGLRKIKVWISNGRSDTISNVGHAESVAASMKGNRYGEIRLELFDGGHVIKKEEFVKALQWFVE 350 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100450.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100450.107.1 >prot_P-canaliculata_contig100450.107.1 ID=prot_P-canaliculata_contig100450.107.1|Name=mRNA_P-canaliculata_contig100450.107.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=235bp KGGEGWGTSFSSGYSGSWLRDLAEGHEVSKVKFILGVPEDFDPVKGCPVFback to top mRNA from alignment at P-canaliculata_contig100450:2..706+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100450.107.1 ID=mRNA_P-canaliculata_contig100450.107.1|Name=mRNA_P-canaliculata_contig100450.107.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=705bp|location=Sequence derived from alignment at P-canaliculata_contig100450:2..706+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100450:2..706+ >mRNA_P-canaliculata_contig100450.107.1 ID=mRNA_P-canaliculata_contig100450.107.1|Name=mRNA_P-canaliculata_contig100450.107.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at P-canaliculata_contig100450:2..706+ (Pelvetia canaliculata dioecious)back to top |