Homology
BLAST of mRNA_P-canaliculata_contig100390.99.1 vs. uniprot
Match: A0A2E0QXA7_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E0QXA7_9BACT) HSP 1 Score: 117 bits (294), Expect = 7.190e-26 Identity = 88/299 (29.43%), Postives = 147/299 (49.16%), Query Frame = 1 Query: 1 FVGLLSATPIFLLLLNGPIFRFAAKKGLAIYAEKNGLEHQATITGSLWSGPSITDLSLTPEIEATGPVRKLTAKEATIDYSIPALISDGP-LGMLEKLALKQVTLDLVLKEKTEEEKAAEPPKDPDKKPFDPNTLWNLLAADFEIEDVNVSITTGEKTTIIEGFTLVLPPGGTGKIALGKLTLPNGKGSDGFTAPLTSTGDSLTIGDGIQVIDPVRIRSLVLQKEITPILSGQIDL--AGGTLDLGFTRSREISAKLSSGAIDLTKFLPENPPVSTTISA----FNATFSGDFKDPSTW 876
FVGL+ + LL LNGP FR K AEK G+E TI GS+W G SI ++ L + P+ L +EAT+DY LI+ G LE + +++ T+++ L E + ++K + K +P D + WNLL A+F + ++++ I G+K+ I+ F+L PG G+ + L LP + +A L S+++ Q+ ++SL + + + G+ D AGG F+ + + S K+ G + +P + + + F GDF++PSTW
Sbjct: 39 FVGLI----VLLLFLNGPGFRIFGKAIALNLAEKQGIEGDFTIDGSIWGGFSIGNVELEGK---ENPLVSLKLEEATVDYDTWGLITSATTFGWLELVRIQKATVEIDLPEPSGDKKKPKEQKKSQAEPKDFSPFWNLLDAEFALAEIDLVIKQGDKSYRIDNFSLQSNPGEDGRFTITGLELPGNEPVSPISAVLQKDEHSVSL-QSWQIGSTTSLQSLTVAESKPGVFDGEADFKFAGGKFSANFSSAGKASLKMHRGTTFVLSEIPAGGEIQAKLGGRVTDLDLRFDGDFENPSTW 329
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Exons | 1 |
| Model size | 876 |
| Cds size | 876 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815577.3285468-CDS-P-canaliculata_contig100390:151..1027 | 1622815577.3285468-CDS-P-canaliculata_contig100390:151..1027 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig100390 152..1027 - |
| 1693494147.0460708-CDS-P-canaliculata_contig100390:151..1027 | 1693494147.0460708-CDS-P-canaliculata_contig100390:151..1027 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig100390 152..1027 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100390.99.1 >prot_P-canaliculata_contig100390.99.1 ID=prot_P-canaliculata_contig100390.99.1|Name=mRNA_P-canaliculata_contig100390.99.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=292bp
FVGLLSATPIFLLLLNGPIFRFAAKKGLAIYAEKNGLEHQATITGSLWSG
PSITDLSLTPEIEATGPVRKLTAKEATIDYSIPALISDGPLGMLEKLALK
QVTLDLVLKEKTEEEKAAEPPKDPDKKPFDPNTLWNLLAADFEIEDVNVS
ITTGEKTTIIEGFTLVLPPGGTGKIALGKLTLPNGKGSDGFTAPLTSTGD
SLTIGDGIQVIDPVRIRSLVLQKEITPILSGQIDLAGGTLDLGFTRSREI
SAKLSSGAIDLTKFLPENPPVSTTISAFNATFSGDFKDPSTW back to topmRNA from alignment at P-canaliculata_contig100390:152..1027- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig100390.99.1 ID=mRNA_P-canaliculata_contig100390.99.1|Name=mRNA_P-canaliculata_contig100390.99.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=876bp|location=Sequence derived from alignment at P-canaliculata_contig100390:152..1027- (Pelvetia canaliculata dioecious)
TTTGTCGGTCTCCTCAGCGCGACCCCGATTTTTCTACTGCTGCTGAACGG
CCCGATCTTCCGTTTTGCCGCAAAAAAAGGCCTCGCGATCTACGCTGAGA
AAAACGGTCTCGAGCACCAGGCCACCATCACCGGCTCGCTCTGGTCCGGC
CCCTCCATTACCGACCTCTCGCTCACCCCCGAGATCGAAGCCACCGGCCC
CGTCCGTAAGCTCACGGCTAAGGAAGCCACGATCGACTACAGCATCCCCG
CCCTCATCAGCGATGGCCCACTCGGGATGCTGGAAAAGCTCGCGCTGAAA
CAGGTCACCCTTGATCTCGTCCTCAAAGAAAAGACCGAAGAAGAGAAAGC
CGCCGAGCCCCCCAAGGACCCGGATAAAAAACCTTTCGATCCAAATACCC
TCTGGAATCTCCTCGCCGCCGATTTCGAGATCGAAGACGTGAATGTCTCC
ATCACCACTGGCGAAAAGACCACCATCATCGAAGGCTTCACCCTCGTCCT
TCCCCCCGGCGGCACCGGTAAGATCGCCCTCGGCAAGCTCACCCTCCCCA
ATGGCAAAGGCTCCGATGGTTTTACCGCGCCCCTCACATCCACCGGCGAT
TCTCTCACCATCGGTGATGGCATCCAGGTCATCGATCCCGTCCGCATCCG
CTCGCTCGTTCTCCAAAAAGAAATCACCCCCATCCTGTCCGGGCAGATCG
ACCTCGCCGGAGGCACCCTCGACCTCGGCTTCACCCGTTCCCGCGAAATC
TCGGCCAAGTTGAGTTCCGGAGCCATTGATCTCACGAAATTCCTCCCAGA
AAACCCTCCCGTTTCCACCACCATCAGCGCCTTCAACGCTACTTTCTCCG
GCGACTTCAAAGACCCCTCCACCTGG back to topCoding sequence (CDS) from alignment at P-canaliculata_contig100390:152..1027- >mRNA_P-canaliculata_contig100390.99.1 ID=mRNA_P-canaliculata_contig100390.99.1|Name=mRNA_P-canaliculata_contig100390.99.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1752bp|location=Sequence derived from alignment at P-canaliculata_contig100390:152..1027- (Pelvetia canaliculata dioecious)
TTTGTCGGTCTCCTCAGCGCGACCCCGATTTTTCTACTGCTGCTGAACGG
CCCGATCTTCCGTTTTGCCGCAAAAAAAGGCCTCGCGATCTACGCTGAGA
AAAACGGTCTCGAGCACCAGGCCACCATCACCGGCTCGCTCTGGTCCGGC
CCCTCCATTACCGACCTCTCGCTCACCCCCGAGATCGAAGCCACCGGCCC
CGTCCGTAAGCTCACGGCTAAGGAAGCCACGATCGACTACAGCATCCCCG
CCCTCATCAGCGATGGCCCACTCGGGATGCTGGAAAAGCTCGCGCTGAAA
CAGGTCACCCTTGATCTCGTCCTCAAAGAAAAGACCGAAGAAGAGAAAGC
CGCCGAGCCCCCCAAGGACCCGGATAAAAAACCTTTCGATCCAAATACCC
TCTGGAATCTCCTCGCCGCCGATTTCGAGATCGAAGACGTGAATGTCTCC
ATCACCACTGGCGAAAAGACCACCATCATCGAAGGCTTCACCCTCGTCCT
TCCCCCCGGCGGCACCGGTAAGATCGCCCTCGGCAAGCTCACCCTCCCCA
ATGGCAAAGGCTCCGATGGTTTTACCGCGCCCCTCACATCCACCGGCGAT
TCTCTCACCATCGGTGATGGCATCCAGGTCATCGATCCCGTCCGCATCCG
CTCGCTCGTTCTCCAAAAAGAAATCACCCCCATCCTGTCCGGGCAGATCG
ACCTCGCCGGAGGCACCCTCGACCTCGGCTTCACCCGTTCCCGCGAAATC
TCGGCCAAGTTGAGTTCCGGAGCCATTGATCTCACGAAATTCCTCCCAGA
AAACCCTCCCGTTTCCACCACCATCAGCGCCTTCAACGCTACTTTCTCCG
GCGACTTCAAAGACCCCTCCACCTGGTTTGTCGGTCTCCTCAGCGCGACC
CCGATTTTTCTACTGCTGCTGAACGGCCCGATCTTCCGTTTTGCCGCAAA
AAAAGGCCTCGCGATCTACGCTGAGAAAAACGGTCTCGAGCACCAGGCCA
CCATCACCGGCTCGCTCTGGTCCGGCCCCTCCATTACCGACCTCTCGCTC
ACCCCCGAGATCGAAGCCACCGGCCCCGTCCGTAAGCTCACGGCTAAGGA
AGCCACGATCGACTACAGCATCCCCGCCCTCATCAGCGATGGCCCACTCG
GGATGCTGGAAAAGCTCGCGCTGAAACAGGTCACCCTTGATCTCGTCCTC
AAAGAAAAGACCGAAGAAGAGAAAGCCGCCGAGCCCCCCAAGGACCCGGA
TAAAAAACCTTTCGATCCAAATACCCTCTGGAATCTCCTCGCCGCCGATT
TCGAGATCGAAGACGTGAATGTCTCCATCACCACTGGCGAAAAGACCACC
ATCATCGAAGGCTTCACCCTCGTCCTTCCCCCCGGCGGCACCGGTAAGAT
CGCCCTCGGCAAGCTCACCCTCCCCAATGGCAAAGGCTCCGATGGTTTTA
CCGCGCCCCTCACATCCACCGGCGATTCTCTCACCATCGGTGATGGCATC
CAGGTCATCGATCCCGTCCGCATCCGCTCGCTCGTTCTCCAAAAAGAAAT
CACCCCCATCCTGTCCGGGCAGATCGACCTCGCCGGAGGCACCCTCGACC
TCGGCTTCACCCGTTCCCGCGAAATCTCGGCCAAGTTGAGTTCCGGAGCC
ATTGATCTCACGAAATTCCTCCCAGAAAACCCTCCCGTTTCCACCACCAT
CAGCGCCTTCAACGCTACTTTCTCCGGCGACTTCAAAGACCCCTCCACCT
GG back to top
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