mRNA_P-canaliculata_contig100390.99.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig100390.99.1 vs. uniprot
Match: A0A2E0QXA7_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E0QXA7_9BACT) HSP 1 Score: 117 bits (294), Expect = 7.190e-26 Identity = 88/299 (29.43%), Postives = 147/299 (49.16%), Query Frame = 1 Query: 1 FVGLLSATPIFLLLLNGPIFRFAAKKGLAIYAEKNGLEHQATITGSLWSGPSITDLSLTPEIEATGPVRKLTAKEATIDYSIPALISDGP-LGMLEKLALKQVTLDLVLKEKTEEEKAAEPPKDPDKKPFDPNTLWNLLAADFEIEDVNVSITTGEKTTIIEGFTLVLPPGGTGKIALGKLTLPNGKGSDGFTAPLTSTGDSLTIGDGIQVIDPVRIRSLVLQKEITPILSGQIDL--AGGTLDLGFTRSREISAKLSSGAIDLTKFLPENPPVSTTISA----FNATFSGDFKDPSTW 876
FVGL+ + LL LNGP FR K AEK G+E TI GS+W G SI ++ L + P+ L +EAT+DY LI+ G LE + +++ T+++ L E + ++K + K +P D + WNLL A+F + ++++ I G+K+ I+ F+L PG G+ + L LP + +A L S+++ Q+ ++SL + + + G+ D AGG F+ + + S K+ G + +P + + + F GDF++PSTW
Sbjct: 39 FVGLI----VLLLFLNGPGFRIFGKAIALNLAEKQGIEGDFTIDGSIWGGFSIGNVELEGK---ENPLVSLKLEEATVDYDTWGLITSATTFGWLELVRIQKATVEIDLPEPSGDKKKPKEQKKSQAEPKDFSPFWNLLDAEFALAEIDLVIKQGDKSYRIDNFSLQSNPGEDGRFTITGLELPGNEPVSPISAVLQKDEHSVSL-QSWQIGSTTSLQSLTVAESKPGVFDGEADFKFAGGKFSANFSSAGKASLKMHRGTTFVLSEIPAGGEIQAKLGGRVTDLDLRFDGDFENPSTW 329 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100390.99.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100390.99.1 >prot_P-canaliculata_contig100390.99.1 ID=prot_P-canaliculata_contig100390.99.1|Name=mRNA_P-canaliculata_contig100390.99.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=292bp FVGLLSATPIFLLLLNGPIFRFAAKKGLAIYAEKNGLEHQATITGSLWSGback to top mRNA from alignment at P-canaliculata_contig100390:152..1027- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100390.99.1 ID=mRNA_P-canaliculata_contig100390.99.1|Name=mRNA_P-canaliculata_contig100390.99.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=876bp|location=Sequence derived from alignment at P-canaliculata_contig100390:152..1027- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100390:152..1027- >mRNA_P-canaliculata_contig100390.99.1 ID=mRNA_P-canaliculata_contig100390.99.1|Name=mRNA_P-canaliculata_contig100390.99.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1752bp|location=Sequence derived from alignment at P-canaliculata_contig100390:152..1027- (Pelvetia canaliculata dioecious)back to top |