mRNA_M-pyrifera_M_contig12412.4915.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12412.4915.1
Unique NamemRNA_M-pyrifera_M_contig12412.4915.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12412.4915.1 vs. uniprot
Match: A0A6H5JPM6_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPM6_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 5.070e-40
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 2
Query:    2 PYSDATAEKMDLEARQMVDSAYQRTLELVENKKEQIKMVAELLLEKETINHDDLVSLIGARPFKAHKSYLEFISANEDAKQK 247
            PYSDATAEKMDLEAR+MVDSAYQRTLELVE KKEQIK+VAELLLEKETINHDDLVSLIGARPFKAHKSYLEFISANEDAKQK
Sbjct:  824 PYSDATAEKMDLEARKMVDSAYQRTLELVEAKKEQIKLVAELLLEKETINHDDLVSLIGARPFKAHKSYLEFISANEDAKQK 905          
BLAST of mRNA_M-pyrifera_M_contig12412.4915.1 vs. uniprot
Match: A0A835YSU3_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSU3_9STRA)

HSP 1 Score: 103 bits (258), Expect = 5.800e-24
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 2
Query:    2 PYSDATAEKMDLEARQMVDSAYQRTLELVENKKEQIKMVAELLLEKETINHDDLVSLIGARPFKAHKSYLEFISANEDAKQKDAGAA 262
            PYSD TAE MD EA+ MVD A+QRTL+LV   K Q++ +AELLL+KETINHDD+++++G RPF +HKSY EF+ A    K K+AG +
Sbjct:  600 PYSDHTAEVMDTEAKTMVDKAFQRTLDLVAKHKHQVEAIAELLLKKETINHDDMLAVLGPRPFASHKSYEEFVHATMHGKSKEAGGS 686          
BLAST of mRNA_M-pyrifera_M_contig12412.4915.1 vs. uniprot
Match: A0A7S2IDC1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IDC1_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.480e-23
Identity = 51/84 (60.71%), Postives = 67/84 (79.76%), Query Frame = 2
Query:    2 PYSDATAEKMDLEARQMVDSAYQRTLELVENKKEQIKMVAELLLEKETINHDDLVSLIGARPFKAHKSYLEFIS---ANEDAKQ 244
            PYSDATAE MD EARQ+VD+AYQRTL+L+  KKE+++ VA LLL+KETI HDD++ +IG RPFK   +Y E++S   AN+ AK+
Sbjct:  237 PYSDATAEAMDEEARQIVDAAYQRTLDLIREKKEEVEKVANLLLDKETITHDDIIDIIGPRPFKGDAAYNEYVSTRLANKKAKE 320          
BLAST of mRNA_M-pyrifera_M_contig12412.4915.1 vs. uniprot
Match: A0A7S1DCK3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DCK3_CYCTE)

HSP 1 Score: 97.8 bits (242), Expect = 1.170e-22
Identity = 50/80 (62.50%), Postives = 59/80 (73.75%), Query Frame = 2
Query:    2 PYSDATAEKMDLEARQMVDSAYQRTLELVENKKEQIKMVAELLLEKETINHDDLVSLIGARPFKAHKSYLEFISANEDAK 241
            PYSDATAE MD EAR +V  AYQRTL+L+E  K ++KMVA  LLEKETI HDD+V L+G RPF+    Y EF+S  E AK
Sbjct:  191 PYSDATAEAMDEEARSIVREAYQRTLDLIEEHKSEVKMVATTLLEKETITHDDIVDLVGPRPFEGDDQYKEFVSKREAAK 270          
BLAST of mRNA_M-pyrifera_M_contig12412.4915.1 vs. uniprot
Match: A0A1E7F2E8_9STRA (AAA domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F2E8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.770e-22
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 2
Query:    2 PYSDATAEKMDLEARQMVDSAYQRTLELVENKKEQIKMVAELLLEKETINHDDLVSLIGARPFKAHKSYLEFIS 223
            PYSD+TAE MD EAR +VD+AYQRT+EL+++KKE+++ VAE+LLEKETI HDD++ LIG RPFK    Y E+IS
Sbjct:  578 PYSDSTAEAMDEEARAIVDAAYQRTVELIQDKKEEVERVAEMLLEKETITHDDIIDLIGERPFKGDTQYNEYIS 651          
BLAST of mRNA_M-pyrifera_M_contig12412.4915.1 vs. uniprot
Match: A0A7S3JS57_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JS57_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.450e-22
Identity = 47/78 (60.26%), Postives = 63/78 (80.77%), Query Frame = 2
Query:    2 PYSDATAEKMDLEARQMVDSAYQRTLELVENKKEQIKMVAELLLEKETINHDDLVSLIGARPFKAHKSYLEFISANED 235
            PYSDATA+ MD EA+ +VDSAYQRTL+L+ +KK+++  +A LL++KETINHDD+V+ +G RPF  HK Y EFIS+  D
Sbjct:  700 PYSDATAQAMDEEAKSIVDSAYQRTLDLLASKKDEVTRLANLLIKKETINHDDIVACLGQRPFSPHKQYAEFISSRYD 777          
BLAST of mRNA_M-pyrifera_M_contig12412.4915.1 vs. uniprot
Match: A0A7S2V9Y9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V9Y9_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.140e-22
Identity = 47/85 (55.29%), Postives = 68/85 (80.00%), Query Frame = 2
Query:    5 YSDATAEKMDLEARQMVDSAYQRTLELVENKKEQIKMVAELLLEKETINHDDLVSLIGARPFKAHKSYLEFISAN--EDAKQKDA 253
            YSDATA+ MD EA+++VD AY+RT+EL++ KK+Q++++A+LLLEKETIN DD++  IG RPF  H++Y EFI ++  E AK + A
Sbjct:   19 YSDATAQMMDEEAKKIVDEAYKRTVELIKEKKDQVELLAQLLLEKETINVDDVIKTIGPRPFNTHQTYEEFIHSDWKEPAKSESA 103          
BLAST of mRNA_M-pyrifera_M_contig12412.4915.1 vs. uniprot
Match: A0A7S2WKY8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKY8_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 6.200e-22
Identity = 47/75 (62.67%), Postives = 63/75 (84.00%), Query Frame = 2
Query:    2 PYSDATAEKMDLEARQMVDSAYQRTLELVENKKEQIKMVAELLLEKETINHDDLVSLIGARPFKAHKSYLEFISA 226
            PYSDATA+ MD EA+++VD+AYQRTL++V  +KE+I+ +AELLLEKETINHDD++ LIG RPF  +  Y E+IS+
Sbjct:  629 PYSDATAQAMDEEAKKLVDTAYQRTLDIVRERKEEIEKMAELLLEKETINHDDIIHLIGHRPFDTNPQYAEYISS 703          
BLAST of mRNA_M-pyrifera_M_contig12412.4915.1 vs. uniprot
Match: A0A7S2FU06_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FU06_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 6.570e-22
Identity = 47/74 (63.51%), Postives = 60/74 (81.08%), Query Frame = 2
Query:    2 PYSDATAEKMDLEARQMVDSAYQRTLELVENKKEQIKMVAELLLEKETINHDDLVSLIGARPFKAHKSYLEFIS 223
            PYSDATA+ MD EA++MVD AY+RTL+L+  KK ++  VAE+LL+KETINHDD+V  IG RPF+ +K Y EFIS
Sbjct:  208 PYSDATAQAMDEEAKKMVDVAYERTLQLMREKKPEVTAVAEMLLDKETINHDDIVGAIGHRPFEPNKQYAEFIS 281          
BLAST of mRNA_M-pyrifera_M_contig12412.4915.1 vs. uniprot
Match: B7GCH1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GCH1_PHATC)

HSP 1 Score: 97.4 bits (241), Expect = 1.140e-21
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 2
Query:    5 YSDATAEKMDLEARQMVDSAYQRTLELVENKKEQIKMVAELLLEKETINHDDLVSLIGARPFKAHKSYLEFISANEDAKQKD 250
            YSD+TAE MD EAR +VD AYQRT++L+  KK Q++MVA LLLEKETI HDDLV LIGARPF+   +Y E++S     K+K+
Sbjct:  548 YSDSTAEAMDDEARAIVDEAYQRTVDLMTEKKAQVEMVANLLLEKETITHDDLVDLIGARPFQGDSAYQEYVSGRGPMKKKE 629          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12412.4915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPM6_9PHAE5.070e-4096.34AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YSU3_9STRA5.800e-2458.62P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2IDC1_9STRA1.480e-2360.71Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1DCK3_CYCTE1.170e-2262.50Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A1E7F2E8_9STRA1.770e-2264.86AAA domain-containing protein n=1 Tax=Fragilariops... [more]
A0A7S3JS57_9STRA2.450e-2260.26Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2V9Y9_9STRA3.140e-2255.29Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2WKY8_9STRA6.200e-2262.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2FU06_9STRA6.570e-2263.51Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
B7GCH1_PHATC1.140e-2160.98Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12412contigM-pyrifera_M_contig12412:6812..7667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815758.7837064-CDS-M-pyrifera_M_contig12412:6811..69781622815758.7837064-CDS-M-pyrifera_M_contig12412:6811..6978Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12412 6812..6978 -
1692277555.8224785-CDS-M-pyrifera_M_contig12412:6811..69781692277555.8224785-CDS-M-pyrifera_M_contig12412:6811..6978Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12412 6812..6978 -
1622815758.798155-CDS-M-pyrifera_M_contig12412:7561..76671622815758.798155-CDS-M-pyrifera_M_contig12412:7561..7667Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12412 7562..7667 -
1692277555.830462-CDS-M-pyrifera_M_contig12412:7561..76671692277555.830462-CDS-M-pyrifera_M_contig12412:7561..7667Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12412 7562..7667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12412.4915.1prot_M-pyrifera_M_contig12412.4915.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12412 6812..7667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12412.4915.1

>prot_M-pyrifera_M_contig12412.4915.1 ID=prot_M-pyrifera_M_contig12412.4915.1|Name=mRNA_M-pyrifera_M_contig12412.4915.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
ALLRRDGGKNGLGGEADGGQRVPANARAGREQEGADQDGGRAPAGEGDHQ
PRRSRVAYRRPTFQGPQELPGVYFGQRRREAKGRRRRADDG
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mRNA from alignment at M-pyrifera_M_contig12412:6812..7667-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12412.4915.1 ID=mRNA_M-pyrifera_M_contig12412.4915.1|Name=mRNA_M-pyrifera_M_contig12412.4915.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=856bp|location=Sequence derived from alignment at M-pyrifera_M_contig12412:6812..7667- (Macrocystis pyrifera P11B4 male)
GCCTTACTCAGACGCGACGGCGGAAAAAATGGACTTGGAGGCGAGGCAGA TGGTGGACAGCGCGTACCAGCGAACGCTCGAGCTGGTCGAGAACAAGAAG GAGCAGGTCGGTCGGGAGAGCCTGGTGGCAACACGCTGATTTGCACGTGG TATAATATTCTAAACGTCGGACAGGTCATCCGCGCCCACTTCATTATGTA CCCCCAATCACCCTTCAAGGCCGATCTGCTGCAGTCCCGATGTTGTATTA TCTACTACTGCTGTAGTCCCGATGTTGTATGATTTACTGCTGTAGTCTGC ATGATCTGTACTCTGCAGATTCTGAGTTAGATCTGTGCTATAAACAGATC CCGCAAACTTCTCACAACGGTATATAAGGAACTATTTGTAGATGATCTAG ATGATGTACAGGTAGATCATGATGTAGTTCTACAGCAGGTGTGTACTACA GTAGTCATCGCAGTAAGATGTACCAGGCTGTAGTACACAACGGCGACCCC CCCCTCCCCCCCCCCTATCCCTCCTTTTTCAGCCGAATCATACAGCAGTA CCGTTCATGCGTGGAAAAAAACAGCATCCCACCCGCCGCCAACCCCCCCC CCCCGCCCCCCGCAACCGCACCCGGGCATCATATTGCCCTGCTTCTCGTG TACCGGTACATCCTATTTCCAATTTGTGTCCTCGAGCAGATCAAGATGGT GGCCGAGCTCCTGCTGGAGAAGGAGACCATCAACCACGACGATCTCGTGT CGCTTATCGGCGCCCGACCTTTCAAGGCCCACAAGAGCTACCTGGAGTTT ATTTCGGCCAACGAAGACGCGAAGCAAAAGGACGCCGGCGCCGCGCAGAC GACGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12412:6812..7667-

>mRNA_M-pyrifera_M_contig12412.4915.1 ID=mRNA_M-pyrifera_M_contig12412.4915.1|Name=mRNA_M-pyrifera_M_contig12412.4915.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig12412:6812..7667- (Macrocystis pyrifera P11B4 male)
GCCTTACTCAGACGCGACGGCGGAAAAAATGGACTTGGAGGCGAGGCAGA
TGGTGGACAGCGCGTACCAGCGAACGCTCGAGCTGGTCGAGAACAAGAAG
GAGCAGGCCTTACTCAGACGCGACGGCGGAAAAAATGGACTTGGAGGCGA
GGCAGATGGTGGACAGCGCGTACCAGCGAACGCTCGAGCTGGTCGAGAAC
AAGAAGGAGCAGATCAAGATGGTGGCCGAGCTCCTGCTGGAGAAGGAGAC
CATCAACCACGACGATCTCGTGTCGCTTATCGGCGCCCGACCTTTCAAGG
CCCACAAGAGCTACCTGGAGTTTATTTCGGCCAACGAAGACGCGAAGCAA
AAGGACGCCGGCGCCGCGCAGACGACGGAATCAAGATGGTGGCCGAGCTC
CTGCTGGAGAAGGAGACCATCAACCACGACGATCTCGTGTCGCTTATCGG
CGCCCGACCTTTCAAGGCCCACAAGAGCTACCTGGAGTTTATTTCGGCCA
ACGAAGACGCGAAGCAAAAGGACGCCGGCGCCGCGCAGACGACGGA
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