mRNA_M-pyrifera_M_contig124009.4901.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124009.4901.1
Unique NamemRNA_M-pyrifera_M_contig124009.4901.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124009.4901.1 vs. uniprot
Match: F0ZYJ6_DICPU (acidPPc domain-containing protein (Fragment) n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZYJ6_DICPU)

HSP 1 Score: 120 bits (300), Expect = 5.630e-29
Identity = 58/138 (42.03%), Postives = 83/138 (60.14%), Query Frame = 1
Query:    1 WARVYLGVHYPSDCVVGAALGAVICGAGLLLLFADVLGCTSCREGACYAGVTSPARITPVNMSAIGWWPLLLSSAASVLATILFMMPPIQFWEKCERAFGLLAPCFVFQLAFLCPNGSTSGGSLAAPLLPPVWWAYPF 414
            +AR+ LGVHYPSDCV G   GA++C AG      D++GC SC + +CYA + S   IT  +MS + +  L+      ++  I+ +M P+ FW KC+R +G+L P   FQL  LCP+    GGSL+ P  P  W++Y F
Sbjct:  339 FARINLGVHYPSDCVGGVIQGAIVCIAGTAFRKVDIVGCRSCWDDSCYAAIDSAQEITFAHMSRLNFIMLVSLVLLFLVVPIVSVMKPVDFWSKCDRVYGMLFPAIAFQLLLLCPSSYHLGGSLSKPHNPH-WYSYIF 475          
BLAST of mRNA_M-pyrifera_M_contig124009.4901.1 vs. uniprot
Match: L8H555_ACACA (PAP2 superfamily domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H555_ACACA)

HSP 1 Score: 118 bits (296), Expect = 8.110e-29
Identity = 59/137 (43.07%), Postives = 75/137 (54.74%), Query Frame = 1
Query:    1 WARVYLGVHYPSDCVVGAALGAVICGAGLLLLFADVLGCTSCREG-ACYAGVTSPARITPVNMSAIGWWPLLLSSAASVLATILFMMPPIQFWEKCERAFGLLAPCFVFQLAFLCPNGSTSGGSLAAPLLPPVWWAY 408
            +AR+ LGVHYPSDCV G   GA IC  G LL   DV+GCTSC     CY+  T    IT   +    WW  +   A       + +  P+ FW KC+R +G+L PC  F++ FLCP       SLAAP  PP W++Y
Sbjct:  244 FARINLGVHYPSDCVGGLLQGAAICVVGTLLWELDVIGCTSCSSSDTCYS--TEDDAITWHTLGRANWWVFVCLFAVMAGIVGVCLAKPLDFWAKCDRVYGMLFPCVAFRVTFLCPVSLNDHASLAAPTWPPAWYSY 378          
BLAST of mRNA_M-pyrifera_M_contig124009.4901.1 vs. uniprot
Match: UPI000644A4B4 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644A4B4)

HSP 1 Score: 112 bits (279), Expect = 2.760e-26
Identity = 59/143 (41.26%), Postives = 83/143 (58.04%), Query Frame = 1
Query:    1 WARVYLGVHYPSDCVVGAALGAVICGAGLLLLFADVLGCTSCREGACYAGVTSPARITPVNMSAIGWWPLLLSSAASVLAT---ILFMMPPIQFWEKCERAFGLLAPCFVFQLAFLCPNGSTSGGSLAAPLLPPVWWAYPFAV 420
            +AR+ LGVHYPSDC++G   G ++C  G  L   D+LGC SC +  CY+  TSPA  T +  S +G    ++ S   +L     I+ +M P+ FW KC+R +G+L P   FQL FLCP   +   SL  P  P  W++Y FA+
Sbjct:  267 FARINLGVHYPSDCLLGVLQGTIVCLVGTGLRSLDILGCWSCWDNGCYS--TSPA--TTLEFSTLGRLNFIMLSCLIILCVLIPIVTVMKPVDFWSKCDRVYGMLFPSIFFQLLFLCPKAYSEHASLPKPPSPH-WYSYLFAI 404          
BLAST of mRNA_M-pyrifera_M_contig124009.4901.1 vs. uniprot
Match: D3BSK9_POLPP (acidPPc domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BSK9_POLPP)

HSP 1 Score: 111 bits (278), Expect = 1.110e-25
Identity = 55/140 (39.29%), Postives = 80/140 (57.14%), Query Frame = 1
Query:    1 WARVYLGVHYPSDCVVGAALGAVICGAGLLLLFADVLGCTSCREGACYAGVTSPARITPVNMSAIGWWPLLLSSAASVLATILFMMPPIQFWEKCERAFGLLAPCFVFQLAFLCPNGSTSGGSLAAPLLPPVWWAYPFAV 420
            +AR+ LGVHYPSDCV G   G ++C  G  L   D+LGC SC +G CYA  +S   I+   +  + +  L +     +   ++ +M P+ FW KC+R +G+L P  VFQL FLCP   +  GSL  P  P  W+++ F +
Sbjct:  478 FARINLGVHYPSDCVGGVIQGTLVCLIGTGLRSLDILGCKSCWDGGCYA-TSSTCSISFGTLDRLNFIMLSILLLLCIFVPVITVMKPVDFWSKCDRVYGMLFPSMVFQLLFLCPRSYSLAGSLPVPPRPH-WYSFVFGI 615          
BLAST of mRNA_M-pyrifera_M_contig124009.4901.1 vs. uniprot
Match: Q54UH9_DICDI (acidPPc domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54UH9_DICDI)

HSP 1 Score: 110 bits (276), Expect = 1.550e-25
Identity = 53/138 (38.41%), Postives = 79/138 (57.25%), Query Frame = 1
Query:    1 WARVYLGVHYPSDCVVGAALGAVICGAGLLLLFADVLGCTSCREGACYAGVTSPARITPVNMSAIGWWPLLLSSAASVLATILFMMPPIQFWEKCERAFGLLAPCFVFQLAFLCPNGSTSGGSLAAPLLPPVWWAYPF 414
            +AR+ LGVHYPSDCV G   G ++C  G      D+LGC SC +  CYA + S   IT  +++ + +  L+      ++  I+ +M P+ FW KC+R +G+L P   FQL  LCP+     GSL+ P  P  W+++ F
Sbjct:  389 FARINLGVHYPSDCVGGVIQGTLVCVIGTAFRKIDILGCRSCWDEMCYAPINSAQEITFSHLNRLNFIMLVALLLIFLIIPIVSVMKPVDFWSKCDRVYGMLFPAIAFQLLLLCPSSYRLNGSLSKPSTPH-WYSFVF 525          
BLAST of mRNA_M-pyrifera_M_contig124009.4901.1 vs. uniprot
Match: A0A8J4Q4A5_9MYCE (acidPPc domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q4A5_9MYCE)

HSP 1 Score: 109 bits (272), Expect = 5.540e-25
Identity = 56/139 (40.29%), Postives = 81/139 (58.27%), Query Frame = 1
Query:    1 WARVYLGVHYPSDCVVGAALGAVICGAGLLLLFADVLGCTSCREGACYAGVTSPARITPVN-MSAIGWWPLLLSSAASVLATILFMMPPIQFWEKCERAFGLLAPCFVFQLAFLCPNGSTSGGSLAAPLLPPVWWAYPF 414
            +AR+ LGVHYPSDCV G   G V+C  G     AD++GC SC +G CYA + S  R+  ++ +  + +  L +  A  ++  I+ +M P+ FW KC+R +G+L P   FQL  LCP   +  GSL  P  P  W++Y F
Sbjct:  384 FARINLGVHYPSDCVGGVIQGVVVCLLGTGFRKADIVGCRSCWDGGCYAQIES--RVLSLHTLDRLNFIMLCVLLALFIVIPIVSVMRPVDFWSKCDRVYGMLFPAVAFQLLMLCPRSYSLNGSLPKPSYPE-WYSYLF 519          
BLAST of mRNA_M-pyrifera_M_contig124009.4901.1 vs. uniprot
Match: UPI0006451B53 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006451B53)

HSP 1 Score: 107 bits (266), Expect = 3.340e-24
Identity = 54/143 (37.76%), Postives = 85/143 (59.44%), Query Frame = 1
Query:    1 WARVYLGVHYPSDCVVGAALGAVICGAGLLLLFADVLGCTSCREGACYAGVTSPARITPVNMSAIGWWPLLLSSAASVLATIL---FMMPPIQFWEKCERAFGLLAPCFVFQLAFLCPNGSTSGGSLAAPLLPPVWWAYPFAV 420
            +AR+ LGVHYPSDC  G   GA++C  G  L   D+ GC SC +GACYA  ++P+ +  ++ S +G    ++ +   V+  ++    +M P+ FW KC+R +G+L P   FQL FLCP   ++  SL  P +P  W+++ F +
Sbjct:  364 FARINLGVHYPSDCAAGVLQGALVCLIGTGLRSLDISGCRSCWDGACYA--STPSCV--LSFSTLGRLNFVMMAVLIVICIVIPIVSVMKPVDFWSKCDRVYGMLFPSVCFQLLFLCPRSYSTNASLPKPPVPH-WYSFIFGI 501          
BLAST of mRNA_M-pyrifera_M_contig124009.4901.1 vs. uniprot
Match: A0A152A6H8_9MYCE (acidPPc domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A6H8_9MYCE)

HSP 1 Score: 103 bits (256), Expect = 3.290e-23
Identity = 53/148 (35.81%), Postives = 80/148 (54.05%), Query Frame = 1
Query:    1 WARVYLGVHYPSDCVVGAALGAVICGAGLLLLFADVLGCTSCREGACYAGVTSPARITPVNMSAIGWWPLLLSSAASVLATILFMMPPIQFWEKCERAFGLLAPCFVFQLAFLCPNGSTSGGSLAAPLLPPVWWAYPFAVFAPAVAVV 444
            +AR+ LGVHYPSDCV G   G ++C  G      DV+GC SC   +CYA  T    ++  N+  + +    +  A  ++  I+  M P+ FW KC+R +G+L P   FQL FLCP       SL  P  P  W+++ F++    +A++
Sbjct:  223 FARINLGVHYPSDCVGGVIQGTMVCLIGTSFRAIDVVGCRSCWNDSCYA-TTLSQTLSFSNLGRLNYVMFAILLALCIIIPIVSTMKPVDFWSKCDRVYGMLFPAVCFQLLFLCPKSYDISASLPHPPSPS-WYSFMFSLSIALIAII 368          
BLAST of mRNA_M-pyrifera_M_contig124009.4901.1 vs. uniprot
Match: A0A6B2L6R0_9EUKA (acidPPc domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L6R0_9EUKA)

HSP 1 Score: 100 bits (248), Expect = 3.760e-22
Identity = 53/143 (37.06%), Postives = 77/143 (53.85%), Query Frame = 1
Query:    4 ARVYLGVHYPSDCVVGAALGAVICGAGLLLLFADVLGCTSCRE-GACYAGVTSPARITPVNMSA---IGWWPLLLSSAASVLATILFMMPPIQFWEKCERAFGLLAPCFVFQLAFLCPNGSTSGGSLAAPLLPPVWWAYPFAV 420
            +R+YLGVHYPSDC+ G  LG V+C   + +  AD  GC   +  G CY    +   + P+ +     I WW L        +  +L ++ PI+FW K    FG+L P   F+  FLCP GS    S++A LLPP  W++ F++
Sbjct:  194 SRIYLGVHYPSDCLGGMILGYVVCSISMFIYRADQAGCECAQTAGFCYYSNATMDILQPITLQTLTHINWWVLGGVVFGQFVFAVLCVIRPIKFWIKFGTIFGILFPALTFRFVFLCPTGSHPA-SISANLLPPSGWSFIFSI 335          
BLAST of mRNA_M-pyrifera_M_contig124009.4901.1 vs. uniprot
Match: UPI001D042E72 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001D042E72)

HSP 1 Score: 99.4 bits (246), Expect = 2.100e-21
Identity = 58/154 (37.66%), Postives = 81/154 (52.60%), Query Frame = 1
Query:    4 ARVYLGVHYPSDCVVGAALGAVICGAGLLLLFADVLGCTSCREGA-----------CYAGVTSPAR-ITPV---NMSAIGWWPLLLSSAASVLATILFMMPPIQFWEKCERAFGLLAPCFVFQLAFLCPNGSTSG-GSLAAPLLPPVWWAYPFA 417
            AR+YLGVHYPSDC+ GA  G +    G +     +  CT+C   +           CYA +      IT V   N+S + W+   + S  S+L  ILF++ PIQF+ K    F +LAPC  FQ  FLCP  S +G  ++  P L P W++Y +A
Sbjct:  492 ARIYLGVHYPSDCLFGALQGLLSIILGTICYMIHLSICTTCAGNSDSTIYWNGLMPCYASLEESVNLITEVGRSNLSHVNWYLFCILSIGSLLVGILFVIKPIQFYTKFHHVFSMLAPCLTFQYCFLCPTLSLNGVATIPKPSLFPPWFSYLYA 645          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124009.4901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
F0ZYJ6_DICPU5.630e-2942.03acidPPc domain-containing protein (Fragment) n=1 T... [more]
L8H555_ACACA8.110e-2943.07PAP2 superfamily domain containing protein n=1 Tax... [more]
UPI000644A4B42.760e-2641.26hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D3BSK9_POLPP1.110e-2539.29acidPPc domain-containing protein n=1 Tax=Polyspho... [more]
Q54UH9_DICDI1.550e-2538.41acidPPc domain-containing protein n=1 Tax=Dictyost... [more]
A0A8J4Q4A5_9MYCE5.540e-2540.29acidPPc domain-containing protein n=1 Tax=Polyspho... [more]
UPI0006451B533.340e-2437.76hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A152A6H8_9MYCE3.290e-2335.81acidPPc domain-containing protein n=1 Tax=Tieghemo... [more]
A0A6B2L6R0_9EUKA3.760e-2237.06acidPPc domain-containing protein n=1 Tax=Arcella ... [more]
UPI001D042E722.100e-2137.66uncharacterized protein n=1 Tax=Naegleria lovanien... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124009contigM-pyrifera_M_contig124009:77..520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue1.1e-24
Seed eggNOG ortholog5786.XP_003292492.1
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.PAP2 superfamily
EggNOG OGs2C635@1,2SJ3Z@2759,3XB0E@554915
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815758.221631-CDS-M-pyrifera_M_contig124009:76..5201622815758.221631-CDS-M-pyrifera_M_contig124009:76..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124009 77..520 -
1692277555.582018-CDS-M-pyrifera_M_contig124009:76..5201692277555.582018-CDS-M-pyrifera_M_contig124009:76..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124009 77..520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124009.4901.1prot_M-pyrifera_M_contig124009.4901.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124009 77..520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124009.4901.1

>prot_M-pyrifera_M_contig124009.4901.1 ID=prot_M-pyrifera_M_contig124009.4901.1|Name=mRNA_M-pyrifera_M_contig124009.4901.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
WARVYLGVHYPSDCVVGAALGAVICGAGLLLLFADVLGCTSCREGACYAG
VTSPARITPVNMSAIGWWPLLLSSAASVLATILFMMPPIQFWEKCERAFG
LLAPCFVFQLAFLCPNGSTSGGSLAAPLLPPVWWAYPFAVFAPAVAVV
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mRNA from alignment at M-pyrifera_M_contig124009:77..520-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124009.4901.1 ID=mRNA_M-pyrifera_M_contig124009.4901.1|Name=mRNA_M-pyrifera_M_contig124009.4901.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig124009:77..520- (Macrocystis pyrifera P11B4 male)
TGGGCGAGAGTTTACCTCGGTGTGCATTACCCCAGCGATTGCGTCGTTGG CGCCGCGTTGGGAGCGGTGATATGTGGCGCTGGGCTCCTGCTCCTCTTTG CAGACGTGCTCGGGTGCACCAGCTGCAGAGAGGGAGCCTGTTACGCGGGC GTGACCTCCCCTGCTCGCATCACTCCTGTCAACATGAGTGCCATTGGGTG GTGGCCTCTCCTCCTCTCCTCCGCTGCTTCTGTCCTGGCAACCATTCTCT TCATGATGCCCCCCATCCAGTTTTGGGAAAAGTGTGAGAGAGCCTTTGGC CTCCTCGCCCCTTGCTTCGTTTTCCAACTTGCGTTCCTCTGCCCCAACGG CTCCACGAGCGGTGGCTCGCTGGCCGCCCCCTTGCTGCCCCCCGTGTGGT GGGCATATCCCTTTGCAGTGTTTGCACCTGCCGTTGCTGTGGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124009:77..520-

>mRNA_M-pyrifera_M_contig124009.4901.1 ID=mRNA_M-pyrifera_M_contig124009.4901.1|Name=mRNA_M-pyrifera_M_contig124009.4901.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig124009:77..520- (Macrocystis pyrifera P11B4 male)
TGGGCGAGAGTTTACCTCGGTGTGCATTACCCCAGCGATTGCGTCGTTGG
CGCCGCGTTGGGAGCGGTGATATGTGGCGCTGGGCTCCTGCTCCTCTTTG
CAGACGTGCTCGGGTGCACCAGCTGCAGAGAGGGAGCCTGTTACGCGGGC
GTGACCTCCCCTGCTCGCATCACTCCTGTCAACATGAGTGCCATTGGGTG
GTGGCCTCTCCTCCTCTCCTCCGCTGCTTCTGTCCTGGCAACCATTCTCT
TCATGATGCCCCCCATCCAGTTTTGGGAAAAGTGTGAGAGAGCCTTTGGC
CTCCTCGCCCCTTGCTTCGTTTTCCAACTTGCGTTCCTCTGCCCCAACGG
CTCCACGAGCGGTGGCTCGCTGGCCGCCCCCTTGCTGCCCCCCGTGTGGT
GGGCATATCCCTTTGCAGTGTTTGCACCTGCCGTTGCTGTGGTATGGGCG
AGAGTTTACCTCGGTGTGCATTACCCCAGCGATTGCGTCGTTGGCGCCGC
GTTGGGAGCGGTGATATGTGGCGCTGGGCTCCTGCTCCTCTTTGCAGACG
TGCTCGGGTGCACCAGCTGCAGAGAGGGAGCCTGTTACGCGGGCGTGACC
TCCCCTGCTCGCATCACTCCTGTCAACATGAGTGCCATTGGGTGGTGGCC
TCTCCTCCTCTCCTCCGCTGCTTCTGTCCTGGCAACCATTCTCTTCATGA
TGCCCCCCATCCAGTTTTGGGAAAAGTGTGAGAGAGCCTTTGGCCTCCTC
GCCCCTTGCTTCGTTTTCCAACTTGCGTTCCTCTGCCCCAACGGCTCCAC
GAGCGGTGGCTCGCTGGCCGCCCCCTTGCTGCCCCCCGTGTGGTGGGCAT
ATCCCTTTGCAGTGTTTGCACCTGCCGTTGCTGTGGTA
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