mRNA_M-pyrifera_M_contig123404.4790.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123404.4790.1
Unique NamemRNA_M-pyrifera_M_contig123404.4790.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123404.4790.1 vs. uniprot
Match: A0A5A8C4U6_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C4U6_CAFRO)

HSP 1 Score: 72.8 bits (177), Expect = 1.490e-12
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    4 GSGPLWRTADLKAEKSGLRRTMYFVAPSERGGLGGGRVTARKDVGPVTKYSRTGSYQGTWRGNVPHGYGT 213
            G+ PLWR+ D  A+K+G RRT + VAP+ R  +   R++A    GP++ +  TGSYQG WR N  HG+GT
Sbjct:   12 GTEPLWRSRDRAAQKNGPRRTAFSVAPAARKVVNPHRISAAGPDGPISSFKATGSYQGEWRNNERHGFGT 81          
BLAST of mRNA_M-pyrifera_M_contig123404.4790.1 vs. uniprot
Match: A0A1V9Z3Q1_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z3Q1_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.910e-12
Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = 1
Query:    1 EGSGPLWRTADLKAEKSGLRRTMYFVAPSERGGLGGGRVTARKDVGPVTKYSRTGSYQGTWRGNVPHGYGTRENGRGERYEGGFVDGKRHGQGTLWVR 294
            +GS PLW+T D K+ K+G   ++Y+V  S              +  P + Y+    Y G W  +   GYGT+    G +YEG +VDGKRHG+GT WV+
Sbjct:   11 KGSNPLWKTWDAKSTKAGPHHSVYWVKRSAAHAAED--KYGNPNSNPKSHYTLAAKYNGDWAHDQKAGYGTQVCSNGNKYEGEWVDGKRHGKGTFWVK 106          
BLAST of mRNA_M-pyrifera_M_contig123404.4790.1 vs. uniprot
Match: A0A7S1A669_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A669_NOCSC)

HSP 1 Score: 64.7 bits (156), Expect = 1.120e-9
Identity = 42/109 (38.53%), Postives = 58/109 (53.21%), Query Frame = 1
Query:    7 SGPLWRTADLKAEKSGLRRTMYFVAPSERGGLGGGRVTARKDVGPVTKYSRTGSYQGTWRGNVPHGYGTRENGRGERYEGGFVDGKRHGQGTLWVR-GKGGVLERRYAG 330
            S PLWR  + KA+K G R T+Y+V  +  G    G VT+R+            +YQG W  N   GYG +    G+++EG + +G RHG+GTLW   GK   L + Y G
Sbjct:   30 SVPLWRANNAKAQKVGKRSTIYWVGKNLVGE--DGTVTSRQGT----------TYQGEWLDNKKTGYGVQVYPSGDKFEGQWQEGLRHGEGTLWAPVGKAQKLRKIYVG 126          
BLAST of mRNA_M-pyrifera_M_contig123404.4790.1 vs. uniprot
Match: A0A3R7X1T2_9STRA (EF-hand domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7X1T2_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.630e-7
Identity = 33/92 (35.87%), Postives = 49/92 (53.26%), Query Frame = 1
Query:    1 EGSGPLWRTADLKAEKSGLRRTMYFVAPSERGGLGGGRVTARKDVGPVTKYSRTGSYQGTWRGNVPHGYGTRENGRGERYEGGFVDGKRHGQ 276
            E + PLW+T D K+ KSG   ++Y+V   ++G           +VG  T + +   Y G W  +V  GYGT+    G +YEG + DG RHG+
Sbjct:   21 EATNPLWKTWDAKSVKSGAHHSVYWV---KQGSTSNEDKFGHVEVGKST-FVQAAKYTGDWHDDVKSGYGTQLCASGNKYEGEWKDGCRHGK 108          
BLAST of mRNA_M-pyrifera_M_contig123404.4790.1 vs. uniprot
Match: A0A267DZB3_9PLAT (Uncharacterized protein (Fragment) n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267DZB3_9PLAT)

HSP 1 Score: 53.1 bits (126), Expect = 9.020e-6
Identity = 41/102 (40.20%), Postives = 53/102 (51.96%), Query Frame = 1
Query:    7 SGPLWRTADLKAEKSGLRRTMYFVAPSERGGLGGGRVTARKDVGPVTK-YSRTGS-YQGTWRGNVPHGYGTRE----NGRG--ERYEGGFVDGKRHGQGTLW 288
            S PLW+  D KA+K+GLR T+Y V    RG    G   A K  G  T+ +  TG+ Y+G WR     G+G       NG G  ++Y GG+   KRHG G  W
Sbjct:   16 SEPLWKEWDRKADKAGLRNTIYSV----RGDEYTGEWEANKKQGRGTQVWKGTGAMYEGDWRDGRRCGFGVYSVPLPNGAGYKKQYSGGWKADKRHGYGENW 113          
BLAST of mRNA_M-pyrifera_M_contig123404.4790.1 vs. uniprot
Match: A0A1I8GT34_9PLAT (Uncharacterized protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8GT34_9PLAT)

HSP 1 Score: 53.1 bits (126), Expect = 1.260e-5
Identity = 41/102 (40.20%), Postives = 53/102 (51.96%), Query Frame = 1
Query:    7 SGPLWRTADLKAEKSGLRRTMYFVAPSERGGLGGGRVTARKDVGPVTK-YSRTGS-YQGTWRGNVPHGYGTRE----NGRG--ERYEGGFVDGKRHGQGTLW 288
            S PLW+  D KA+K+GLR T+Y V    RG    G   A K  G  T+ +  TG+ Y+G WR     G+G       NG G  ++Y GG+   KRHG G  W
Sbjct:   27 SEPLWKEWDRKADKAGLRNTIYSV----RGDEYTGEWEANKKQGRGTQVWKGTGAMYEGDWRDGRRCGFGVYSVPLPNGAGYKKQYSGGWKADKRHGYGENW 124          
BLAST of mRNA_M-pyrifera_M_contig123404.4790.1 vs. uniprot
Match: UPI001C4D7EDA (PEGA domain-containing protein n=1 Tax=Marinobacter sp. CAU 1620 TaxID=2856822 RepID=UPI001C4D7EDA)

HSP 1 Score: 52.0 bits (123), Expect = 3.290e-5
Identity = 26/52 (50.00%), Postives = 31/52 (59.62%), Query Frame = 1
Query:  133 VGPVTKYSRTGSYQGTWRGNVPHGYGTRENGRGERYEGGFVDGKRHGQGTLW 288
            VG +  Y+     +G W G V  G GT E+  G RYEG FVDGK HG+GT W
Sbjct:  210 VGKLEAYTTVNYQKGNWVGGVKTGDGTYEDAEGLRYEGQFVDGKFHGEGTAW 261          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123404.4790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A5A8C4U6_CAFRO1.490e-1247.14Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A1V9Z3Q1_9STRA4.910e-1237.76Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S1A669_NOCSC1.120e-938.53Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A3R7X1T2_9STRA4.630e-735.87EF-hand domain-containing protein n=7 Tax=Aphanomy... [more]
A0A267DZB3_9PLAT9.020e-640.20Uncharacterized protein (Fragment) n=3 Tax=Macrost... [more]
A0A1I8GT34_9PLAT1.260e-540.20Uncharacterized protein n=1 Tax=Macrostomum lignan... [more]
UPI001C4D7EDA3.290e-550.00PEGA domain-containing protein n=1 Tax=Marinobacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123404contigM-pyrifera_M_contig123404:2..376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815752.5624158-CDS-M-pyrifera_M_contig123404:1..3761622815752.5624158-CDS-M-pyrifera_M_contig123404:1..376Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123404 2..376 -
1692277552.9144487-CDS-M-pyrifera_M_contig123404:1..3761692277552.9144487-CDS-M-pyrifera_M_contig123404:1..376Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123404 2..376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123404.4790.1prot_M-pyrifera_M_contig123404.4790.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123404 2..376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123404.4790.1

>prot_M-pyrifera_M_contig123404.4790.1 ID=prot_M-pyrifera_M_contig123404.4790.1|Name=mRNA_M-pyrifera_M_contig123404.4790.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
EGSGPLWRTADLKAEKSGLRRTMYFVAPSERGGLGGGRVTARKDVGPVTK
YSRTGSYQGTWRGNVPHGYGTRENGRGERYEGGFVDGKRHGQGTLWVRGK
GGVLERRYAGEWREGRPWGVGVFVF
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mRNA from alignment at M-pyrifera_M_contig123404:2..376-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123404.4790.1 ID=mRNA_M-pyrifera_M_contig123404.4790.1|Name=mRNA_M-pyrifera_M_contig123404.4790.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig123404:2..376- (Macrocystis pyrifera P11B4 male)
GAGGGGAGCGGGCCGTTGTGGCGCACGGCGGACTTGAAGGCGGAGAAGAG CGGTCTTCGGCGCACGATGTACTTTGTGGCGCCGTCGGAGCGAGGGGGTC TGGGCGGGGGGAGGGTGACTGCGCGCAAAGACGTGGGTCCCGTGACCAAG TACTCTCGCACGGGGTCGTACCAGGGCACATGGCGCGGCAACGTGCCACA TGGGTACGGGACGCGGGAGAATGGGCGCGGCGAGCGGTACGAGGGCGGTT TCGTGGACGGGAAGCGGCATGGGCAAGGGACGTTGTGGGTGCGGGGCAAA GGAGGGGTGCTAGAGCGGAGGTACGCCGGAGAGTGGCGTGAGGGGAGGCC CTGGGGCGTGGGAGTGTTCGTGTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123404:2..376-

>mRNA_M-pyrifera_M_contig123404.4790.1 ID=mRNA_M-pyrifera_M_contig123404.4790.1|Name=mRNA_M-pyrifera_M_contig123404.4790.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig123404:2..376- (Macrocystis pyrifera P11B4 male)
GAGGGGAGCGGGCCGTTGTGGCGCACGGCGGACTTGAAGGCGGAGAAGAG
CGGTCTTCGGCGCACGATGTACTTTGTGGCGCCGTCGGAGCGAGGGGGTC
TGGGCGGGGGGAGGGTGACTGCGCGCAAAGACGTGGGTCCCGTGACCAAG
TACTCTCGCACGGGGTCGTACCAGGGCACATGGCGCGGCAACGTGCCACA
TGGGTACGGGACGCGGGAGAATGGGCGCGGCGAGCGGTACGAGGGCGGTT
TCGTGGACGGGAAGCGGCATGGGCAAGGGACGTTGTGGGTGCGGGGCAAA
GGAGGGGTGCTAGAGCGGAGGTACGCCGGAGAGTGGCGTGAGGGGAGGCC
CTGGGGCGTGGGAGTGTTCGTGTTCGAGGGGAGCGGGCCGTTGTGGCGCA
CGGCGGACTTGAAGGCGGAGAAGAGCGGTCTTCGGCGCACGATGTACTTT
GTGGCGCCGTCGGAGCGAGGGGGTCTGGGCGGGGGGAGGGTGACTGCGCG
CAAAGACGTGGGTCCCGTGACCAAGTACTCTCGCACGGGGTCGTACCAGG
GCACATGGCGCGGCAACGTGCCACATGGGTACGGGACGCGGGAGAATGGG
CGCGGCGAGCGGTACGAGGGCGGTTTCGTGGACGGGAAGCGGCATGGGCA
AGGGACGTTGTGGGTGCGGGGCAAAGGAGGGGTGCTAGAGCGGAGGTACG
CCGGAGAGTGGCGTGAGGGGAGGCCCTGGGGCGTGGGAGTGTTCGTGTTC
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