mRNA_M-pyrifera_M_contig123347.4780.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123347.4780.1
Unique NamemRNA_M-pyrifera_M_contig123347.4780.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123347.4780.1 vs. uniprot
Match: A0A4Q2XG03_9BACT (Zinc metalloprotease n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q2XG03_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 3.180e-6
Identity = 29/68 (42.65%), Postives = 40/68 (58.82%), Query Frame = 1
Query:    7 LIPRVFPFGAAAKAGFLAGDRIVTINGHRP---ASVIDAVAKLRSVSPGGTIDIQVERDGEALELSVV 201
            ++  VF  G AAKAG LAGD+IV INGH     A  +D++ +   +S G  I+  VER G A  L ++
Sbjct:  140 IVGEVFENGPAAKAGILAGDKIVAINGHTVNGFAGTLDSITESIVLSKGKEIEFMVERAGSAAPLKLI 207          
BLAST of mRNA_M-pyrifera_M_contig123347.4780.1 vs. uniprot
Match: A0A2N3IAZ4_9BACT (Alpha/beta hydrolase family n=1 Tax=Raineya orbicola TaxID=2016530 RepID=A0A2N3IAZ4_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 4.330e-6
Identity = 28/67 (41.79%), Postives = 39/67 (58.21%), Query Frame = 1
Query:    1 KLLIPRVFPFGAAAKAGFLAGDRIVTINGHRPASVIDAVAKLRSVSPGGTIDIQVERDGEALELSVV 201
            KLLI R+ P  AAAKAG   GD I+T+ G +PA+ +D    +RS SP   I + V R+ +   L  +
Sbjct:   40 KLLITRILPQTAAAKAGLQVGDEILTLEGIKPANQMDLAKIVRSKSPREEISVVVRRNQQIFTLKPI 106          
BLAST of mRNA_M-pyrifera_M_contig123347.4780.1 vs. uniprot
Match: A0A7W0ACN1_9GAMM (Zinc metalloprotease n=1 Tax=Halomonas kenyensis TaxID=321266 RepID=A0A7W0ACN1_9GAMM)

HSP 1 Score: 51.2 bits (121), Expect = 8.120e-6
Identity = 26/64 (40.62%), Postives = 45/64 (70.31%), Query Frame = 1
Query:    7 LIPRVFPFGAAAKAGFLAGDRIVTINGHRPASVIDAVAKLRSVSPGGTIDIQVERDGEALELSV 198
            ++ ++ P  AAA+AG  AGDR++ +NG      +D V+ +R+ SPG T++++VERDGE  +L++
Sbjct:  225 VLGQILPGEAAAEAGLEAGDRVLAVNGTPIDEWMDFVSVVRA-SPGETLELEVERDGERRQLTL 287          
BLAST of mRNA_M-pyrifera_M_contig123347.4780.1 vs. uniprot
Match: A0A533RPD7_9ACTN (Site-2 protease family protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A533RPD7_9ACTN)

HSP 1 Score: 50.1 bits (118), Expect = 1.900e-5
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 1
Query:   10 IPRVFPFGAAAKAGFLAGDRIVTINGHRPASVIDAVAKLRSVSPGGTIDIQVERDGEALELSVV 201
            I RV P  AAAKAG + GDRIV+I G + ++  D V  +   +PG T+ ++   DG A   +VV
Sbjct:   61 ISRVSPSSAAAKAGLVPGDRIVSIGGVKASNFQDLVMVIARYAPGDTVVVKWTHDGSARSATVV 124          
BLAST of mRNA_M-pyrifera_M_contig123347.4780.1 vs. uniprot
Match: A0A2W4RR07_9PROT (Zinc metalloprotease n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4RR07_9PROT)

HSP 1 Score: 50.1 bits (118), Expect = 2.060e-5
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   10 IPRVFPFGAAAKAGFLAGDRIVTINGHRPASVIDAVAKLRSVSPGGTIDIQVERDGEALELSVV 201
            +  V P   AA AGF+ GD I+ I+G R  S  + V ++ S SPG  + ++V+RDG+AL L+VV
Sbjct:  152 VDEVVPNSPAATAGFMPGDVILEIDGKRIDS-FNEVLRIVSTSPGRELTVKVDRDGQALTLTVV 214          
BLAST of mRNA_M-pyrifera_M_contig123347.4780.1 vs. uniprot
Match: UPI001E29D0CE (PDZ domain-containing protein n=1 Tax=Catenulispora rubra TaxID=280293 RepID=UPI001E29D0CE)

HSP 1 Score: 50.1 bits (118), Expect = 2.120e-5
Identity = 24/63 (38.10%), Postives = 39/63 (61.90%), Query Frame = 1
Query:    7 LIPRVFPFGAAAKAGFLAGDRIVTINGHRPASVIDAVAKLRSVSPGGTIDIQVERDGEALELS 195
            L+  V P GAAA+AG L GD ++++   +  +  DA++KL   + G T+ + VER G+ L L+
Sbjct:  596 LVETVLPGGAAAEAGLLHGDVLLSVGNAKIQTADDAISKLSGYTKGATVHLVVERSGQTLNLT 658          
BLAST of mRNA_M-pyrifera_M_contig123347.4780.1 vs. uniprot
Match: X5MEK1_9HYPH (Zinc metalloprotease n=1 Tax=Candidatus Phaeomarinobacter ectocarpi TaxID=1458461 RepID=X5MEK1_9HYPH)

HSP 1 Score: 48.9 bits (115), Expect = 5.280e-5
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 1
Query:   10 IPRVFPFGAAAKAGFLAGDRIVTINGHRPASVIDAVAKLRSVSPGGTIDIQVERDGEALELSVV 201
            +  V P GAAA AGFL GD +V+I+G   AS  D + ++ S SP   +   VERDG  ++L VV
Sbjct:  145 VDEVQPDGAAADAGFLPGDLVVSIDGSAIASFND-MQRIVSTSPERVLAFTVERDGSLVDLEVV 207          
BLAST of mRNA_M-pyrifera_M_contig123347.4780.1 vs. uniprot
Match: A0A3N5KK35_9PROT (Zinc metalloprotease n=2 Tax=Bacteria TaxID=2 RepID=A0A3N5KK35_9PROT)

HSP 1 Score: 48.9 bits (115), Expect = 5.320e-5
Identity = 26/64 (40.62%), Postives = 40/64 (62.50%), Query Frame = 1
Query:   10 IPRVFPFGAAAKAGFLAGDRIVTINGHRPASVIDAVAKLRSVSPGGTIDIQVERDGEALELSVV 201
            I +V P   A +AG  +GDRIV +NG+ P    D +AK+   SPG ++ + +ERDG+  ++ VV
Sbjct:  221 IGQVLPSQVAQQAGIRSGDRIVAVNGN-PVGEWDQLAKIIHRSPGTSLALTIERDGQRQDVQVV 283          
BLAST of mRNA_M-pyrifera_M_contig123347.4780.1 vs. uniprot
Match: A0A081G0R6_9GAMM (Zinc metalloprotease n=1 Tax=Marinobacterium sp. AK27 TaxID=1232683 RepID=A0A081G0R6_9GAMM)

HSP 1 Score: 48.9 bits (115), Expect = 5.320e-5
Identity = 25/57 (43.86%), Postives = 38/57 (66.67%), Query Frame = 1
Query:   31 GAAAKAGFLAGDRIVTINGHRPASVIDAVAKLRSVSPGGTIDIQVERDGEALELSVV 201
            GAA  AG +AGD++++INGH  +  +  V ++R  SPG T+ + V+R  + LEL VV
Sbjct:  233 GAAQAAGLMAGDKVLSINGHPVSGWMALVEEIRQ-SPGQTLSLGVQRGAQRLELEVV 288          
BLAST of mRNA_M-pyrifera_M_contig123347.4780.1 vs. uniprot
Match: A0A7L5YDF2_9PROT (Zinc metalloprotease n=7 Tax=Proteobacteria TaxID=1224 RepID=A0A7L5YDF2_9PROT)

HSP 1 Score: 48.5 bits (114), Expect = 7.280e-5
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1
Query:    7 LIPRVFPFGAAAKAGFLAGDRIVTINGHRPASVIDAVAKLRSVSPGGTIDIQVERDGEALELSVV 201
            +I  V P GAAA+AGF +GDR+V  NG    +  D V  +R   P  ++ I+ ER+G+  EL+VV
Sbjct:  221 VIGEVLPGGAAARAGFQSGDRLVAANGKAVTNWQDWVKLIRQ-HPSQSLRIEYEREGQMRELTVV 284          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123347.4780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A4Q2XG03_9BACT3.180e-642.65Zinc metalloprotease n=1 Tax=Verrucomicrobiaceae b... [more]
A0A2N3IAZ4_9BACT4.330e-641.79Alpha/beta hydrolase family n=1 Tax=Raineya orbico... [more]
A0A7W0ACN1_9GAMM8.120e-640.63Zinc metalloprotease n=1 Tax=Halomonas kenyensis T... [more]
A0A533RPD7_9ACTN1.900e-542.19Site-2 protease family protein (Fragment) n=1 Tax=... [more]
A0A2W4RR07_9PROT2.060e-543.75Zinc metalloprotease n=1 Tax=Proteobacteria bacter... [more]
UPI001E29D0CE2.120e-538.10PDZ domain-containing protein n=1 Tax=Catenulispor... [more]
X5MEK1_9HYPH5.280e-545.31Zinc metalloprotease n=1 Tax=Candidatus Phaeomarin... [more]
A0A3N5KK35_9PROT5.320e-540.63Zinc metalloprotease n=2 Tax=Bacteria TaxID=2 RepI... [more]
A0A081G0R6_9GAMM5.320e-543.86Zinc metalloprotease n=1 Tax=Marinobacterium sp. A... [more]
A0A7L5YDF2_9PROT7.280e-543.08Zinc metalloprotease n=7 Tax=Proteobacteria TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123347contigM-pyrifera_M_contig123347:281..481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815751.9895325-CDS-M-pyrifera_M_contig123347:280..4811622815751.9895325-CDS-M-pyrifera_M_contig123347:280..481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123347 281..481 -
1692277552.6016264-CDS-M-pyrifera_M_contig123347:280..4811692277552.6016264-CDS-M-pyrifera_M_contig123347:280..481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123347 281..481 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123347.4780.1prot_M-pyrifera_M_contig123347.4780.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123347 281..481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123347.4780.1

>prot_M-pyrifera_M_contig123347.4780.1 ID=prot_M-pyrifera_M_contig123347.4780.1|Name=mRNA_M-pyrifera_M_contig123347.4780.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
KLLIPRVFPFGAAAKAGFLAGDRIVTINGHRPASVIDAVAKLRSVSPGGT
IDIQVERDGEALELSVV
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mRNA from alignment at M-pyrifera_M_contig123347:281..481-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123347.4780.1 ID=mRNA_M-pyrifera_M_contig123347.4780.1|Name=mRNA_M-pyrifera_M_contig123347.4780.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig123347:281..481- (Macrocystis pyrifera P11B4 male)
AAGCTGCTGATCCCGCGCGTTTTTCCTTTCGGTGCGGCGGCAAAGGCCGG ATTTCTGGCCGGTGACCGGATTGTCACGATCAATGGCCACCGGCCGGCCT CGGTCATCGACGCCGTTGCAAAATTGCGGTCGGTTTCACCAGGCGGCACC ATCGATATTCAGGTGGAACGGGATGGTGAGGCGCTCGAACTCAGCGTGGT A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123347:281..481-

>mRNA_M-pyrifera_M_contig123347.4780.1 ID=mRNA_M-pyrifera_M_contig123347.4780.1|Name=mRNA_M-pyrifera_M_contig123347.4780.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig123347:281..481- (Macrocystis pyrifera P11B4 male)
AAGCTGCTGATCCCGCGCGTTTTTCCTTTCGGTGCGGCGGCAAAGGCCGG
ATTTCTGGCCGGTGACCGGATTGTCACGATCAATGGCCACCGGCCGGCCT
CGGTCATCGACGCCGTTGCAAAATTGCGGTCGGTTTCACCAGGCGGCACC
ATCGATATTCAGGTGGAACGGGATGGTGAGGCGCTCGAACTCAGCGTGGT
AAAGCTGCTGATCCCGCGCGTTTTTCCTTTCGGTGCGGCGGCAAAGGCCG
GATTTCTGGCCGGTGACCGGATTGTCACGATCAATGGCCACCGGCCGGCC
TCGGTCATCGACGCCGTTGCAAAATTGCGGTCGGTTTCACCAGGCGGCAC
CATCGATATTCAGGTGGAACGGGATGGTGAGGCGCTCGAACTCAGCGTGG
TA
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