prot_M-pyrifera_M_contig102222.477.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig102222.477.1
Unique Nameprot_M-pyrifera_M_contig102222.477.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length139
Homology
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A2E7KKD1_9PLAN (RNA polymerase subunit sigma-70 n=9 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KKD1_9PLAN)

HSP 1 Score: 255 bits (651), Expect = 6.380e-85
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
Query:    1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRENKSRTRTL 138
            SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRENKSRTRTL
Sbjct:   49 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRENKSRTRTL 186          
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A6C164_9PLAN (Sigma70_r4_2 domain-containing protein n=12 Tax=Planctomycetaceae TaxID=126 RepID=A6C164_9PLAN)

HSP 1 Score: 223 bits (569), Expect = 1.960e-72
Identity = 119/138 (86.23%), Postives = 127/138 (92.03%), Query Frame = 0
Query:    1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRENKSRTRTL 138
            SEVFLVLLANDYRVLRNFRG SSLATYLTVVSRRV+VKKMVERRMAEALGHVST S++E  S+E  R QQ ++DQEEIQNMIRQL P DAQIVEQYHLQGKSYQQISSDLDIPENSIGPTL+RARNRMREN+S TRTL
Sbjct:   49 SEVFLVLLANDYRVLRNFRGNSSLATYLTVVSRRVVVKKMVERRMAEALGHVSTKSKMEYASEEHARHQQLVDDQEEIQNMIRQLSPTDAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLSRARNRMRENQSNTRTL 186          
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A517W2X8_9PLAN (RNA polymerase sigma factor n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W2X8_9PLAN)

HSP 1 Score: 217 bits (552), Expect = 1.020e-69
Identity = 114/138 (82.61%), Postives = 128/138 (92.75%), Query Frame = 0
Query:    1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRENKSRTRTL 138
            SEVFLVLLANDYRVL NFRG SSLATYLTVVSRRV+VKKMVERRMAEALGHV+T S++E + DEQ+RQQQ  EDQEEIQNMI+QLP ADAQIVEQYHLQGKSY+QIS+DLDIPENSIGPTL+RAR++MR+ K +TRTL
Sbjct:   58 SEVFLVLLANDYRVLSNFRGNSSLATYLTVVSRRVVVKKMVERRMAEALGHVATQSKLESIPDEQSRQQQLQEDQEEIQNMIKQLPAADAQIVEQYHLQGKSYRQISTDLDIPENSIGPTLSRARSQMRDTKPKTRTL 195          
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A2D6SZ57_9PLAN (RNA polymerase subunit sigma-70 n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SZ57_9PLAN)

HSP 1 Score: 152 bits (383), Expect = 4.990e-44
Identity = 84/137 (61.31%), Postives = 103/137 (75.18%), Query Frame = 0
Query:    1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRM-RENKSRTR 136
            +E+FL LLANDYRVLR+FRG+ SLATYLTVVSRRV V+++  RR AEALGHVS S  +   +      +Q LED EE+Q ++ +LP  DA IV QYHL+GKSY +ISSDL IP NSIGPTL+RAR R+ R   +RTR
Sbjct:   58 AEIFLALLANDYRVLRSFRGECSLATYLTVVSRRVAVREVARRRKAEALGHVSVSGTVFEQAATADTNEQHLEDHEEVQRLLGELPAKDAAIVRQYHLEGKSYSEISSDLGIPANSIGPTLSRARARLSRPGSNRTR 194          
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A3E0PTU2_9BACT (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0PTU2_9BACT)

HSP 1 Score: 143 bits (360), Expect = 1.430e-40
Identity = 72/129 (55.81%), Postives = 97/129 (75.19%), Query Frame = 0
Query:    1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMR 129
            SE+F+ LL ND+ VLRNFRGQSSLATYLTVV+RR++V ++V R   EALGH+S        +  +TR+ Q +ED EEI  ++ ++PPADAQIV  +HL+GKSY +IS  L IPEN++G TL+RAR ++R
Sbjct:   58 SEIFVTLLKNDFAVLRNFRGQSSLATYLTVVARRIVVHQLVRRAREEALGHISAHQAAVDAAGRETREPQRIEDAEEISLLMNRIPPADAQIVRMFHLEGKSYHEISDKLGIPENTVGSTLSRAREKLR 186          
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A7W0M7W7_9PLAN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7W0M7W7_9PLAN)

HSP 1 Score: 142 bits (358), Expect = 2.410e-40
Identity = 74/135 (54.81%), Postives = 104/135 (77.04%), Query Frame = 0
Query:    1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRENKSRT 135
            +EV L LL NDY +LR FRGQSSLATYLTVVSRR++VK+M +RRMAEA+GHV++       +D   R+   +E+++E++ ++  LPP +A+IV +YHLQG+SY+ IS DL +PENSIGP L+RAR +++E K R+
Sbjct:   58 AEVLLRLLENDYAILRRFRGQSSLATYLTVVSRRIVVKEMAQRRMAEAMGHVNSHVAEPASNDHHERR---IENRDEVERLLAGLPPQEAEIVRRYHLQGESYRDISRDLGVPENSIGPALSRARAQLKERKVRS 189          
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A518CME0_9PLAN (RNA polymerase sigma factor n=1 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CME0_9PLAN)

HSP 1 Score: 140 bits (352), Expect = 2.060e-39
Identity = 72/135 (53.33%), Postives = 108/135 (80.00%), Query Frame = 0
Query:    1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRENKSRT 135
            SE+FL LLAND++VL  F+G+SSLATYLTV+SRR++V+++ +RR AEALGHV T+SR          + +  ED+E+++ ++ +LP  +A+IV+QYHL+G+SY++IS+ L +PEN+IGPTLTRAR RM++N+ R+
Sbjct:   58 SEIFLQLLANDHQVLARFQGESSLATYLTVISRRIVVREISQRRKAEALGHV-TASRSSLDQASANLEVERWEDREQVRTLLNELPGNEAEIVKQYHLEGRSYREISAALGVPENTIGPTLTRARTRMKDNQVRS 191          
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A4P5XXX4_9BACT (RNA polymerase sigma factor n=3 Tax=Planctomycetes TaxID=203682 RepID=A0A4P5XXX4_9BACT)

HSP 1 Score: 138 bits (348), Expect = 7.840e-39
Identity = 68/130 (52.31%), Postives = 99/130 (76.15%), Query Frame = 0
Query:    1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRE 130
            +EVF+ LL+N+Y  LR FRG+SSLATYLTV++RR++VK++ +RR++EALGHV         +     + Q +ED+EE+  ++R LPP +A ++ Q+HL+GKSY++IS+ L IPENSIGPTL RA +RMR+
Sbjct:   58 AEVFVTLLSNNYGALRQFRGKSSLATYLTVIARRIVVKEITQRRLSEALGHVPAHGSSLDAAGVGATESQRIEDREEVTRLLRVLPPREADVIRQFHLEGKSYREISASLGIPENSIGPTLNRALDRMRQ 187          
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A5C9B850_9BACT (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A5C9B850_9BACT)

HSP 1 Score: 135 bits (339), Expect = 1.800e-37
Identity = 66/130 (50.77%), Postives = 97/130 (74.62%), Query Frame = 0
Query:    1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRE 130
            +EVF+ LL+N+Y  LR FRG+SSLATYLTV++RR++VK++ +RR++EALGHV         ++        +E++EE+  ++  LPP +A ++ Q+HL+GKSY++ISS L IPENSIGPTL+RA  RMR+
Sbjct:   58 AEVFVTLLSNNYSALRQFRGKSSLATYLTVIARRIVVKEITQRRLSEALGHVPAHGASMEAANAVVTDSPRIENREEVARLLSGLPPREADVIRQFHLEGKSYREISSSLGIPENSIGPTLSRALERMRQ 187          
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A517Z7M7_9PLAN (RNA polymerase sigma factor n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517Z7M7_9PLAN)

HSP 1 Score: 135 bits (339), Expect = 1.910e-37
Identity = 73/132 (55.30%), Postives = 99/132 (75.00%), Query Frame = 0
Query:    1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSR--IERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRE 130
            SEVF+ LL +D+ VLRNFRGQSSLATYLTVVSRR++V++M  RR A A+GHV       +  + +EQ      ++D +E+Q +++ LP  +A+IV QYHL+GK+Y+QISS L I +NSIGPTLTRAR R+R+
Sbjct:   58 SEVFVTLLKDDFAVLRNFRGQSSLATYLTVVSRRLVVREMARRRKAAAMGHVDAHQPDVVGHLPEEQR-----IDDVDEVQQLMQHLPANEAEIVRQYHLEGKTYRQISSSLKISQNSIGPTLTRARERLRQ 184          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KKD1_9PLAN6.380e-85100.00RNA polymerase subunit sigma-70 n=9 Tax=Gimesia Ta... [more]
A6C164_9PLAN1.960e-7286.23Sigma70_r4_2 domain-containing protein n=12 Tax=Pl... [more]
A0A517W2X8_9PLAN1.020e-6982.61RNA polymerase sigma factor n=2 Tax=Gimesia aquari... [more]
A0A2D6SZ57_9PLAN4.990e-4461.31RNA polymerase subunit sigma-70 n=1 Tax=Planctomyc... [more]
A0A3E0PTU2_9BACT1.430e-4055.81Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A7W0M7W7_9PLAN2.410e-4054.81Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A518CME0_9PLAN2.060e-3953.33RNA polymerase sigma factor n=1 Tax=Polystyrenella... [more]
A0A4P5XXX4_9BACT7.840e-3952.31RNA polymerase sigma factor n=3 Tax=Planctomycetes... [more]
A0A5C9B850_9BACT1.800e-3750.77Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A517Z7M7_9PLAN1.910e-3755.30RNA polymerase sigma factor n=1 Tax=Maioricimonas ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 58..78
NoneNo IPR availablePANTHERPTHR43133:SF2coord: 12..135
IPR013249RNA polymerase sigma factor 70, region 4 type 2PFAMPF08281Sigma70_r4_2coord: 76..128
e-value: 5.9E-12
score: 45.1
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 51..134
e-value: 3.8E-13
score: 50.9
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 13..130
e-value: 4.0E-18
score: 63.6
IPR039425RNA polymerase sigma-70 likePANTHERPTHR43133FAMILY NOT NAMEDcoord: 12..135
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 70..130

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102222contigM-pyrifera_M_contig102222:246..662 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102222.477.1mRNA_M-pyrifera_M_contig102222.477.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig102222 246..662 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig102222.477.1 ID=prot_M-pyrifera_M_contig102222.477.1|Name=mRNA_M-pyrifera_M_contig102222.477.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALG
HVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQG
KSYQQISSDLDIPENSIGPTLTRARNRMRENKSRTRTL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013249RNA_pol_sigma70_r4_t2
IPR036388WH-like_DNA-bd_sf
IPR014284RNA_pol_sigma-70_dom
IPR039425RNA_pol_sigma-70
IPR013324RNA_pol_sigma_r3/r4-like