mRNA_M-pyrifera_M_contig102222.477.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102222.477.1
Unique NamemRNA_M-pyrifera_M_contig102222.477.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A2E7KKD1_9PLAN (RNA polymerase subunit sigma-70 n=9 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KKD1_9PLAN)

HSP 1 Score: 255 bits (651), Expect = 6.380e-85
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1
Query:    1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRENKSRTRTL 414
            SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRENKSRTRTL
Sbjct:   49 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRENKSRTRTL 186          
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A6C164_9PLAN (Sigma70_r4_2 domain-containing protein n=12 Tax=Planctomycetaceae TaxID=126 RepID=A6C164_9PLAN)

HSP 1 Score: 223 bits (569), Expect = 1.960e-72
Identity = 119/138 (86.23%), Postives = 127/138 (92.03%), Query Frame = 1
Query:    1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRENKSRTRTL 414
            SEVFLVLLANDYRVLRNFRG SSLATYLTVVSRRV+VKKMVERRMAEALGHVST S++E  S+E  R QQ ++DQEEIQNMIRQL P DAQIVEQYHLQGKSYQQISSDLDIPENSIGPTL+RARNRMREN+S TRTL
Sbjct:   49 SEVFLVLLANDYRVLRNFRGNSSLATYLTVVSRRVVVKKMVERRMAEALGHVSTKSKMEYASEEHARHQQLVDDQEEIQNMIRQLSPTDAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLSRARNRMRENQSNTRTL 186          
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A517W2X8_9PLAN (RNA polymerase sigma factor n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W2X8_9PLAN)

HSP 1 Score: 217 bits (552), Expect = 1.020e-69
Identity = 114/138 (82.61%), Postives = 128/138 (92.75%), Query Frame = 1
Query:    1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRENKSRTRTL 414
            SEVFLVLLANDYRVL NFRG SSLATYLTVVSRRV+VKKMVERRMAEALGHV+T S++E + DEQ+RQQQ  EDQEEIQNMI+QLP ADAQIVEQYHLQGKSY+QIS+DLDIPENSIGPTL+RAR++MR+ K +TRTL
Sbjct:   58 SEVFLVLLANDYRVLSNFRGNSSLATYLTVVSRRVVVKKMVERRMAEALGHVATQSKLESIPDEQSRQQQLQEDQEEIQNMIKQLPAADAQIVEQYHLQGKSYRQISTDLDIPENSIGPTLSRARSQMRDTKPKTRTL 195          
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A2D6SZ57_9PLAN (RNA polymerase subunit sigma-70 n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SZ57_9PLAN)

HSP 1 Score: 152 bits (383), Expect = 4.990e-44
Identity = 84/137 (61.31%), Postives = 103/137 (75.18%), Query Frame = 1
Query:    1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRM-RENKSRTR 408
            +E+FL LLANDYRVLR+FRG+ SLATYLTVVSRRV V+++  RR AEALGHVS S  +   +      +Q LED EE+Q ++ +LP  DA IV QYHL+GKSY +ISSDL IP NSIGPTL+RAR R+ R   +RTR
Sbjct:   58 AEIFLALLANDYRVLRSFRGECSLATYLTVVSRRVAVREVARRRKAEALGHVSVSGTVFEQAATADTNEQHLEDHEEVQRLLGELPAKDAAIVRQYHLEGKSYSEISSDLGIPANSIGPTLSRARARLSRPGSNRTR 194          
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A3E0PTU2_9BACT (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0PTU2_9BACT)

HSP 1 Score: 143 bits (360), Expect = 1.430e-40
Identity = 72/129 (55.81%), Postives = 97/129 (75.19%), Query Frame = 1
Query:    1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMR 387
            SE+F+ LL ND+ VLRNFRGQSSLATYLTVV+RR++V ++V R   EALGH+S        +  +TR+ Q +ED EEI  ++ ++PPADAQIV  +HL+GKSY +IS  L IPEN++G TL+RAR ++R
Sbjct:   58 SEIFVTLLKNDFAVLRNFRGQSSLATYLTVVARRIVVHQLVRRAREEALGHISAHQAAVDAAGRETREPQRIEDAEEISLLMNRIPPADAQIVRMFHLEGKSYHEISDKLGIPENTVGSTLSRAREKLR 186          
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A7W0M7W7_9PLAN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7W0M7W7_9PLAN)

HSP 1 Score: 142 bits (358), Expect = 2.410e-40
Identity = 74/135 (54.81%), Postives = 104/135 (77.04%), Query Frame = 1
Query:    1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRENKSRT 405
            +EV L LL NDY +LR FRGQSSLATYLTVVSRR++VK+M +RRMAEA+GHV++       +D   R+   +E+++E++ ++  LPP +A+IV +YHLQG+SY+ IS DL +PENSIGP L+RAR +++E K R+
Sbjct:   58 AEVLLRLLENDYAILRRFRGQSSLATYLTVVSRRIVVKEMAQRRMAEAMGHVNSHVAEPASNDHHERR---IENRDEVERLLAGLPPQEAEIVRRYHLQGESYRDISRDLGVPENSIGPALSRARAQLKERKVRS 189          
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A518CME0_9PLAN (RNA polymerase sigma factor n=1 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CME0_9PLAN)

HSP 1 Score: 140 bits (352), Expect = 2.060e-39
Identity = 72/135 (53.33%), Postives = 108/135 (80.00%), Query Frame = 1
Query:    1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRENKSRT 405
            SE+FL LLAND++VL  F+G+SSLATYLTV+SRR++V+++ +RR AEALGHV T+SR          + +  ED+E+++ ++ +LP  +A+IV+QYHL+G+SY++IS+ L +PEN+IGPTLTRAR RM++N+ R+
Sbjct:   58 SEIFLQLLANDHQVLARFQGESSLATYLTVISRRIVVREISQRRKAEALGHV-TASRSSLDQASANLEVERWEDREQVRTLLNELPGNEAEIVKQYHLEGRSYREISAALGVPENTIGPTLTRARTRMKDNQVRS 191          
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A4P5XXX4_9BACT (RNA polymerase sigma factor n=3 Tax=Planctomycetes TaxID=203682 RepID=A0A4P5XXX4_9BACT)

HSP 1 Score: 138 bits (348), Expect = 7.840e-39
Identity = 68/130 (52.31%), Postives = 99/130 (76.15%), Query Frame = 1
Query:    1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRE 390
            +EVF+ LL+N+Y  LR FRG+SSLATYLTV++RR++VK++ +RR++EALGHV         +     + Q +ED+EE+  ++R LPP +A ++ Q+HL+GKSY++IS+ L IPENSIGPTL RA +RMR+
Sbjct:   58 AEVFVTLLSNNYGALRQFRGKSSLATYLTVIARRIVVKEITQRRLSEALGHVPAHGSSLDAAGVGATESQRIEDREEVTRLLRVLPPREADVIRQFHLEGKSYREISASLGIPENSIGPTLNRALDRMRQ 187          
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A5C9B850_9BACT (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A5C9B850_9BACT)

HSP 1 Score: 135 bits (339), Expect = 1.800e-37
Identity = 66/130 (50.77%), Postives = 97/130 (74.62%), Query Frame = 1
Query:    1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRE 390
            +EVF+ LL+N+Y  LR FRG+SSLATYLTV++RR++VK++ +RR++EALGHV         ++        +E++EE+  ++  LPP +A ++ Q+HL+GKSY++ISS L IPENSIGPTL+RA  RMR+
Sbjct:   58 AEVFVTLLSNNYSALRQFRGKSSLATYLTVIARRIVVKEITQRRLSEALGHVPAHGASMEAANAVVTDSPRIENREEVARLLSGLPPREADVIRQFHLEGKSYREISSSLGIPENSIGPTLSRALERMRQ 187          
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A517Z7M7_9PLAN (RNA polymerase sigma factor n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517Z7M7_9PLAN)

HSP 1 Score: 135 bits (339), Expect = 1.910e-37
Identity = 73/132 (55.30%), Postives = 99/132 (75.00%), Query Frame = 1
Query:    1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSR--IERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRE 390
            SEVF+ LL +D+ VLRNFRGQSSLATYLTVVSRR++V++M  RR A A+GHV       +  + +EQ      ++D +E+Q +++ LP  +A+IV QYHL+GK+Y+QISS L I +NSIGPTLTRAR R+R+
Sbjct:   58 SEVFVTLLKDDFAVLRNFRGQSSLATYLTVVSRRLVVREMARRRKAAAMGHVDAHQPDVVGHLPEEQR-----IDDVDEVQQLMQHLPANEAEIVRQYHLEGKTYRQISSSLKISQNSIGPTLTRARERLRQ 184          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KKD1_9PLAN6.380e-85100.00RNA polymerase subunit sigma-70 n=9 Tax=Gimesia Ta... [more]
A6C164_9PLAN1.960e-7286.23Sigma70_r4_2 domain-containing protein n=12 Tax=Pl... [more]
A0A517W2X8_9PLAN1.020e-6982.61RNA polymerase sigma factor n=2 Tax=Gimesia aquari... [more]
A0A2D6SZ57_9PLAN4.990e-4461.31RNA polymerase subunit sigma-70 n=1 Tax=Planctomyc... [more]
A0A3E0PTU2_9BACT1.430e-4055.81Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A7W0M7W7_9PLAN2.410e-4054.81Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A518CME0_9PLAN2.060e-3953.33RNA polymerase sigma factor n=1 Tax=Polystyrenella... [more]
A0A4P5XXX4_9BACT7.840e-3952.31RNA polymerase sigma factor n=3 Tax=Planctomycetes... [more]
A0A5C9B850_9BACT1.800e-3750.77Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A517Z7M7_9PLAN1.910e-3755.30RNA polymerase sigma factor n=1 Tax=Maioricimonas ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102222contigM-pyrifera_M_contig102222:246..662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score224.2
Seed ortholog evalue3.9e-56
Seed eggNOG ortholog344747.PM8797T_05780
KEGG koko:K03088
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog
EggNOG OGs2IZNR@203682,COG1595@1,COG1595@2
COG Functional cat.K
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Exons1
Model size417
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815524.0273075-CDS-M-pyrifera_M_contig102222:245..6621622815524.0273075-CDS-M-pyrifera_M_contig102222:245..662Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102222 246..662 -
1692277448.8738594-CDS-M-pyrifera_M_contig102222:245..6621692277448.8738594-CDS-M-pyrifera_M_contig102222:245..662Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102222 246..662 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102222.477.1prot_M-pyrifera_M_contig102222.477.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102222 246..662 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102222.477.1

>prot_M-pyrifera_M_contig102222.477.1 ID=prot_M-pyrifera_M_contig102222.477.1|Name=mRNA_M-pyrifera_M_contig102222.477.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALG
HVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQG
KSYQQISSDLDIPENSIGPTLTRARNRMRENKSRTRTL*
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mRNA from alignment at M-pyrifera_M_contig102222:246..662-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102222.477.1 ID=mRNA_M-pyrifera_M_contig102222.477.1|Name=mRNA_M-pyrifera_M_contig102222.477.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig102222:246..662- (Macrocystis pyrifera P11B4 male)
TCCGAAGTCTTTCTGGTTCTGCTGGCCAACGACTACCGTGTGCTGCGCAA CTTCCGTGGACAGAGTTCTCTGGCCACTTATCTGACCGTGGTTTCCCGTC GCGTGATTGTAAAAAAAATGGTCGAGCGACGGATGGCTGAAGCTCTGGGA CATGTCTCTACCTCTTCGCGCATCGAACGTGTCTCCGACGAACAGACCCG TCAACAGCAGGCGCTTGAGGATCAGGAAGAGATCCAGAACATGATTCGCC AGCTGCCTCCGGCGGACGCTCAGATTGTGGAGCAATATCACCTGCAGGGA AAGTCTTACCAGCAGATCAGCAGTGATCTGGACATCCCGGAAAATTCGAT CGGCCCCACACTCACTCGGGCACGCAATCGCATGCGGGAAAATAAATCCC GGACACGCACGCTCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102222:246..662-

>mRNA_M-pyrifera_M_contig102222.477.1 ID=mRNA_M-pyrifera_M_contig102222.477.1|Name=mRNA_M-pyrifera_M_contig102222.477.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig102222:246..662- (Macrocystis pyrifera P11B4 male)
TCCGAAGTCTTTCTGGTTCTGCTGGCCAACGACTACCGTGTGCTGCGCAA
CTTCCGTGGACAGAGTTCTCTGGCCACTTATCTGACCGTGGTTTCCCGTC
GCGTGATTGTAAAAAAAATGGTCGAGCGACGGATGGCTGAAGCTCTGGGA
CATGTCTCTACCTCTTCGCGCATCGAACGTGTCTCCGACGAACAGACCCG
TCAACAGCAGGCGCTTGAGGATCAGGAAGAGATCCAGAACATGATTCGCC
AGCTGCCTCCGGCGGACGCTCAGATTGTGGAGCAATATCACCTGCAGGGA
AAGTCTTACCAGCAGATCAGCAGTGATCTGGACATCCCGGAAAATTCGAT
CGGCCCCACACTCACTCGGGCACGCAATCGCATGCGGGAAAATAAATCCC
GGACACGCACGCTCTAATCCGAAGTCTTTCTGGTTCTGCTGGCCAACGAC
TACCGTGTGCTGCGCAACTTCCGTGGACAGAGTTCTCTGGCCACTTATCT
GACCGTGGTTTCCCGTCGCGTGATTGTAAAAAAAATGGTCGAGCGACGGA
TGGCTGAAGCTCTGGGACATGTCTCTACCTCTTCGCGCATCGAACGTGTC
TCCGACGAACAGACCCGTCAACAGCAGGCGCTTGAGGATCAGGAAGAGAT
CCAGAACATGATTCGCCAGCTGCCTCCGGCGGACGCTCAGATTGTGGAGC
AATATCACCTGCAGGGAAAGTCTTACCAGCAGATCAGCAGTGATCTGGAC
ATCCCGGAAAATTCGATCGGCCCCACACTCACTCGGGCACGCAATCGCAT
GCGGGAAAATAAATCCCGGACACGCACGCTCTAA
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