mRNA_M-pyrifera_M_contig102222.477.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A2E7KKD1_9PLAN (RNA polymerase subunit sigma-70 n=9 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KKD1_9PLAN) HSP 1 Score: 255 bits (651), Expect = 6.380e-85 Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1 Query: 1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRENKSRTRTL 414 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRENKSRTRTL Sbjct: 49 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRENKSRTRTL 186
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A6C164_9PLAN (Sigma70_r4_2 domain-containing protein n=12 Tax=Planctomycetaceae TaxID=126 RepID=A6C164_9PLAN) HSP 1 Score: 223 bits (569), Expect = 1.960e-72 Identity = 119/138 (86.23%), Postives = 127/138 (92.03%), Query Frame = 1 Query: 1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRENKSRTRTL 414 SEVFLVLLANDYRVLRNFRG SSLATYLTVVSRRV+VKKMVERRMAEALGHVST S++E S+E R QQ ++DQEEIQNMIRQL P DAQIVEQYHLQGKSYQQISSDLDIPENSIGPTL+RARNRMREN+S TRTL Sbjct: 49 SEVFLVLLANDYRVLRNFRGNSSLATYLTVVSRRVVVKKMVERRMAEALGHVSTKSKMEYASEEHARHQQLVDDQEEIQNMIRQLSPTDAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLSRARNRMRENQSNTRTL 186
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A517W2X8_9PLAN (RNA polymerase sigma factor n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W2X8_9PLAN) HSP 1 Score: 217 bits (552), Expect = 1.020e-69 Identity = 114/138 (82.61%), Postives = 128/138 (92.75%), Query Frame = 1 Query: 1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRENKSRTRTL 414 SEVFLVLLANDYRVL NFRG SSLATYLTVVSRRV+VKKMVERRMAEALGHV+T S++E + DEQ+RQQQ EDQEEIQNMI+QLP ADAQIVEQYHLQGKSY+QIS+DLDIPENSIGPTL+RAR++MR+ K +TRTL Sbjct: 58 SEVFLVLLANDYRVLSNFRGNSSLATYLTVVSRRVVVKKMVERRMAEALGHVATQSKLESIPDEQSRQQQLQEDQEEIQNMIKQLPAADAQIVEQYHLQGKSYRQISTDLDIPENSIGPTLSRARSQMRDTKPKTRTL 195
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A2D6SZ57_9PLAN (RNA polymerase subunit sigma-70 n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SZ57_9PLAN) HSP 1 Score: 152 bits (383), Expect = 4.990e-44 Identity = 84/137 (61.31%), Postives = 103/137 (75.18%), Query Frame = 1 Query: 1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRM-RENKSRTR 408 +E+FL LLANDYRVLR+FRG+ SLATYLTVVSRRV V+++ RR AEALGHVS S + + +Q LED EE+Q ++ +LP DA IV QYHL+GKSY +ISSDL IP NSIGPTL+RAR R+ R +RTR Sbjct: 58 AEIFLALLANDYRVLRSFRGECSLATYLTVVSRRVAVREVARRRKAEALGHVSVSGTVFEQAATADTNEQHLEDHEEVQRLLGELPAKDAAIVRQYHLEGKSYSEISSDLGIPANSIGPTLSRARARLSRPGSNRTR 194
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A3E0PTU2_9BACT (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0PTU2_9BACT) HSP 1 Score: 143 bits (360), Expect = 1.430e-40 Identity = 72/129 (55.81%), Postives = 97/129 (75.19%), Query Frame = 1 Query: 1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMR 387 SE+F+ LL ND+ VLRNFRGQSSLATYLTVV+RR++V ++V R EALGH+S + +TR+ Q +ED EEI ++ ++PPADAQIV +HL+GKSY +IS L IPEN++G TL+RAR ++R Sbjct: 58 SEIFVTLLKNDFAVLRNFRGQSSLATYLTVVARRIVVHQLVRRAREEALGHISAHQAAVDAAGRETREPQRIEDAEEISLLMNRIPPADAQIVRMFHLEGKSYHEISDKLGIPENTVGSTLSRAREKLR 186
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A7W0M7W7_9PLAN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7W0M7W7_9PLAN) HSP 1 Score: 142 bits (358), Expect = 2.410e-40 Identity = 74/135 (54.81%), Postives = 104/135 (77.04%), Query Frame = 1 Query: 1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRENKSRT 405 +EV L LL NDY +LR FRGQSSLATYLTVVSRR++VK+M +RRMAEA+GHV++ +D R+ +E+++E++ ++ LPP +A+IV +YHLQG+SY+ IS DL +PENSIGP L+RAR +++E K R+ Sbjct: 58 AEVLLRLLENDYAILRRFRGQSSLATYLTVVSRRIVVKEMAQRRMAEAMGHVNSHVAEPASNDHHERR---IENRDEVERLLAGLPPQEAEIVRRYHLQGESYRDISRDLGVPENSIGPALSRARAQLKERKVRS 189
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A518CME0_9PLAN (RNA polymerase sigma factor n=1 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CME0_9PLAN) HSP 1 Score: 140 bits (352), Expect = 2.060e-39 Identity = 72/135 (53.33%), Postives = 108/135 (80.00%), Query Frame = 1 Query: 1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRENKSRT 405 SE+FL LLAND++VL F+G+SSLATYLTV+SRR++V+++ +RR AEALGHV T+SR + + ED+E+++ ++ +LP +A+IV+QYHL+G+SY++IS+ L +PEN+IGPTLTRAR RM++N+ R+ Sbjct: 58 SEIFLQLLANDHQVLARFQGESSLATYLTVISRRIVVREISQRRKAEALGHV-TASRSSLDQASANLEVERWEDREQVRTLLNELPGNEAEIVKQYHLEGRSYREISAALGVPENTIGPTLTRARTRMKDNQVRS 191
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A4P5XXX4_9BACT (RNA polymerase sigma factor n=3 Tax=Planctomycetes TaxID=203682 RepID=A0A4P5XXX4_9BACT) HSP 1 Score: 138 bits (348), Expect = 7.840e-39 Identity = 68/130 (52.31%), Postives = 99/130 (76.15%), Query Frame = 1 Query: 1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRE 390 +EVF+ LL+N+Y LR FRG+SSLATYLTV++RR++VK++ +RR++EALGHV + + Q +ED+EE+ ++R LPP +A ++ Q+HL+GKSY++IS+ L IPENSIGPTL RA +RMR+ Sbjct: 58 AEVFVTLLSNNYGALRQFRGKSSLATYLTVIARRIVVKEITQRRLSEALGHVPAHGSSLDAAGVGATESQRIEDREEVTRLLRVLPPREADVIRQFHLEGKSYREISASLGIPENSIGPTLNRALDRMRQ 187
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A5C9B850_9BACT (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A5C9B850_9BACT) HSP 1 Score: 135 bits (339), Expect = 1.800e-37 Identity = 66/130 (50.77%), Postives = 97/130 (74.62%), Query Frame = 1 Query: 1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSRIERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRE 390 +EVF+ LL+N+Y LR FRG+SSLATYLTV++RR++VK++ +RR++EALGHV ++ +E++EE+ ++ LPP +A ++ Q+HL+GKSY++ISS L IPENSIGPTL+RA RMR+ Sbjct: 58 AEVFVTLLSNNYSALRQFRGKSSLATYLTVIARRIVVKEITQRRLSEALGHVPAHGASMEAANAVVTDSPRIENREEVARLLSGLPPREADVIRQFHLEGKSYREISSSLGIPENSIGPTLSRALERMRQ 187
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Match: A0A517Z7M7_9PLAN (RNA polymerase sigma factor n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517Z7M7_9PLAN) HSP 1 Score: 135 bits (339), Expect = 1.910e-37 Identity = 73/132 (55.30%), Postives = 99/132 (75.00%), Query Frame = 1 Query: 1 SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGHVSTSSR--IERVSDEQTRQQQALEDQEEIQNMIRQLPPADAQIVEQYHLQGKSYQQISSDLDIPENSIGPTLTRARNRMRE 390 SEVF+ LL +D+ VLRNFRGQSSLATYLTVVSRR++V++M RR A A+GHV + + +EQ ++D +E+Q +++ LP +A+IV QYHL+GK+Y+QISS L I +NSIGPTLTRAR R+R+ Sbjct: 58 SEVFVTLLKDDFAVLRNFRGQSSLATYLTVVSRRLVVREMARRRKAAAMGHVDAHQPDVVGHLPEEQR-----IDDVDEVQQLMQHLPANEAEIVRQYHLEGKTYRQISSSLKISQNSIGPTLTRARERLRQ 184 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102222.477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig102222.477.1 >prot_M-pyrifera_M_contig102222.477.1 ID=prot_M-pyrifera_M_contig102222.477.1|Name=mRNA_M-pyrifera_M_contig102222.477.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp SEVFLVLLANDYRVLRNFRGQSSLATYLTVVSRRVIVKKMVERRMAEALGback to top mRNA from alignment at M-pyrifera_M_contig102222:246..662- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig102222.477.1 ID=mRNA_M-pyrifera_M_contig102222.477.1|Name=mRNA_M-pyrifera_M_contig102222.477.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig102222:246..662- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig102222:246..662- >mRNA_M-pyrifera_M_contig102222.477.1 ID=mRNA_M-pyrifera_M_contig102222.477.1|Name=mRNA_M-pyrifera_M_contig102222.477.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig102222:246..662- (Macrocystis pyrifera P11B4 male)back to top |