prot_M-pyrifera_M_contig100209.46.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig100209.46.1
Unique Nameprot_M-pyrifera_M_contig100209.46.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length82
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig100209.46.1 vs. uniprot
Match: A0A7S3GD04_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GD04_9EUKA)

HSP 1 Score: 58.5 bits (140), Expect = 8.580e-9
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 0 
Query:    7 RALCAAVERSETLEVLVLRNCQIATWCVESLRKALGHSKTLRRVDLRGNPLGRDGVREVVEGLKQ 71
            ++  AAV  S  LE L LRNC ++  C+ESL  AL  S++LRRVD+R N LGRDG   ++  L Q
Sbjct:   90 KSFFAAVASSSQLEELDLRNCALSPSCLESLCHALAVSRSLRRVDIRWNNLGRDGGAALLSALSQ 154
[Close]
BLAST of mRNA_M-pyrifera_M_contig100209.46.1 vs. uniprot
Match: UPI000643AD2A (NACHT, LRR and PYD domains-containing protein 4 n=1 Tax=Condylura cristata TaxID=143302 RepID=UPI000643AD2A)

HSP 1 Score: 53.9 bits (128), Expect = 1.690e-6
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = 0 
Query:    5 GFRALCAAVERSET-LEVLVLRNCQIATWCVESLRKALGHSKTLRRVDLRGNPLGRDGVREVVEGL 69
            G   LC A+   +  LE L L +CQ+ + C  +L  AL  +KTL ++DLRGNPLG  GV E+ + L
Sbjct:  822 GVATLCEALAHPDCRLEQLGLGHCQLTSACCGALAAALVSTKTLEKLDLRGNPLGHSGVAELCQAL 887
[Close]
BLAST of mRNA_M-pyrifera_M_contig100209.46.1 vs. uniprot
Match: UPI00188F0C6B (NACHT, LRR and PYD domains-containing protein 4-like n=1 Tax=Talpa occidentalis TaxID=50954 RepID=UPI00188F0C6B)

HSP 1 Score: 52.0 bits (123), Expect = 8.100e-6
Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 0 
Query:    5 GFRALCAAVER-SETLEVLVLRNCQIATWCVESLRKALGHSKTLRRVDLRGNPLGRDGVREVVEGL 69
            G  ALC A+   S  LE L L +C++ + C   L  AL  +KTL+++DLRGN LGR GV E+ + L
Sbjct:  879 GAAALCEALAHPSCRLEKLGLSHCRLTSACCGDLAAALVSTKTLQKLDLRGNALGRGGVAELCQAL 944
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100209.46.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3GD04_9EUKA8.580e-949.23Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
UPI000643AD2A1.690e-643.94NACHT, LRR and PYD domains-containing protein 4 n=... [more]
UPI00188F0C6B8.100e-645.45NACHT, LRR and PYD domains-containing protein 4-li... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 44..71
e-value: 0.0031
score: 26.8
coord: 16..43
e-value: 27.0
score: 7.1
NoneNo IPR availablePANTHERPTHR24107FAMILY NOT NAMEDcoord: 3..79
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 3..82
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..82
e-value: 6.7E-18
score: 66.7
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 43..63
e-value: 0.031
score: 14.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100209contigM-pyrifera_M_contig100209:19..264 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100209.46.1mRNA_M-pyrifera_M_contig100209.46.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig100209 1..264 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig100209.46.1 ID=prot_M-pyrifera_M_contig100209.46.1|Name=mRNA_M-pyrifera_M_contig100209.46.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MDRAGFRALCAAVERSETLEVLVLRNCQIATWCVESLRKALGHSKTLRRV
DLRGNPLGRDGVREVVEGLKQCKTLLDLDVVG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt