mRNA_M-pyrifera_M_contig100209.46.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100209.46.1
Unique NamemRNA_M-pyrifera_M_contig100209.46.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100209.46.1 vs. uniprot
Match: A0A7S3GD04_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GD04_9EUKA)

HSP 1 Score: 65.1 bits (157), Expect = 3.220e-11
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    1 EWNALGMDRAGFRALCAAVERSETLEVLVLRNCQIATWCVESLRKALGHSKTLRRVDLRGNPLGRDGVREVVEGLKQ 231
            +WN++G   +  ++  AAV  S  LE L LRNC ++  C+ESL  AL  S++LRRVD+R N LGRDG   ++  L Q
Sbjct:   78 DWNSIGAVPSIAKSFFAAVASSSQLEELDLRNCALSPSCLESLCHALAVSRSLRRVDIRWNNLGRDGGAALLSALSQ 154
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BLAST of mRNA_M-pyrifera_M_contig100209.46.1 vs. uniprot
Match: UPI000643AD2A (NACHT, LRR and PYD domains-containing protein 4 n=1 Tax=Condylura cristata TaxID=143302 RepID=UPI000643AD2A)

HSP 1 Score: 53.5 bits (127), Expect = 2.910e-6
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:   31 GFRALCAAVERSET-LEVLVLRNCQIATWCVESLRKALGHSKTLRRVDLRGNPLGRDGVREVVEGL 225
            G   LC A+   +  LE L L +CQ+ + C  +L  AL  +KTL ++DLRGNPLG  GV E+ + L
Sbjct:  822 GVATLCEALAHPDCRLEQLGLGHCQLTSACCGALAAALVSTKTLEKLDLRGNPLGHSGVAELCQAL 887
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BLAST of mRNA_M-pyrifera_M_contig100209.46.1 vs. uniprot
Match: UPI00188F0C6B (NACHT, LRR and PYD domains-containing protein 4-like n=1 Tax=Talpa occidentalis TaxID=50954 RepID=UPI00188F0C6B)

HSP 1 Score: 51.6 bits (122), Expect = 1.390e-5
Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   31 GFRALCAAVER-SETLEVLVLRNCQIATWCVESLRKALGHSKTLRRVDLRGNPLGRDGVREVVEGL 225
            G  ALC A+   S  LE L L +C++ + C   L  AL  +KTL+++DLRGN LGR GV E+ + L
Sbjct:  879 GAAALCEALAHPSCRLEKLGLSHCRLTSACCGDLAAALVSTKTLQKLDLRGNALGRGGVAELCQAL 944
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100209.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3GD04_9EUKA3.220e-1145.45Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
UPI000643AD2A2.910e-643.94NACHT, LRR and PYD domains-containing protein 4 n=... [more]
UPI00188F0C6B1.390e-545.45NACHT, LRR and PYD domains-containing protein 4-li... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100209contigM-pyrifera_M_contig100209:1..264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size264
Cds size246
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815497.341559-UTR-M-pyrifera_M_contig100209:0..181622815497.341559-UTR-M-pyrifera_M_contig100209:0..18Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100209 1..18 +
1692277438.4700127-UTR-M-pyrifera_M_contig100209:0..181692277438.4700127-UTR-M-pyrifera_M_contig100209:0..18Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100209 1..18 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815497.3530784-CDS-M-pyrifera_M_contig100209:18..2641622815497.3530784-CDS-M-pyrifera_M_contig100209:18..264Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100209 19..264 +
1692277438.4802444-CDS-M-pyrifera_M_contig100209:18..2641692277438.4802444-CDS-M-pyrifera_M_contig100209:18..264Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100209 19..264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100209.46.1prot_M-pyrifera_M_contig100209.46.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100209 19..264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100209.46.1

>prot_M-pyrifera_M_contig100209.46.1 ID=prot_M-pyrifera_M_contig100209.46.1|Name=mRNA_M-pyrifera_M_contig100209.46.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MDRAGFRALCAAVERSETLEVLVLRNCQIATWCVESLRKALGHSKTLRRV
DLRGNPLGRDGVREVVEGLKQCKTLLDLDVVG
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mRNA from alignment at M-pyrifera_M_contig100209:1..264+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100209.46.1 ID=mRNA_M-pyrifera_M_contig100209.46.1|Name=mRNA_M-pyrifera_M_contig100209.46.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig100209:1..264+ (Macrocystis pyrifera P11B4 male)
GAATGGAACGCGCTTGGAATGGATCGTGCAGGGTTTCGGGCATTGTGTGC
AGCTGTGGAACGAAGTGAAACATTGGAGGTGCTGGTTTTGCGCAATTGTC
AGATTGCTACGTGGTGTGTAGAGAGTTTGAGGAAAGCGTTGGGACACAGC
AAGACATTACGACGTGTAGATTTGCGTGGGAACCCTTTGGGGCGAGATGG
AGTTCGTGAAGTTGTTGAAGGATTGAAGCAGTGCAAGACTTTGCTTGATT
TGGATGTGGTGGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100209:1..264+

>mRNA_M-pyrifera_M_contig100209.46.1 ID=mRNA_M-pyrifera_M_contig100209.46.1|Name=mRNA_M-pyrifera_M_contig100209.46.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig100209:1..264+ (Macrocystis pyrifera P11B4 male)
ATGGATCGTGCAGGGTTTCGGGCATTGTGTGCAGCTGTGGAACGAAGTGA
AACATTGGAGGTGCTGGTTTTGCGCAATTGTCAGATTGCTACGTGGTGTG
TAGAGAGTTTGAGGAAAGCGTTGGGACACAGCAAGACATTACGACGTGTA
GATTTGCGTGGGAACCCTTTGGGGCGAGATGGAGTTCGTGAAGTTGTTGA
AGGATTGAAGCAGTGCAAGACTTTGCTTGATTTGGATGTGGTGGGTATGG
ATCGTGCAGGGTTTCGGGCATTGTGTGCAGCTGTGGAACGAAGTGAAACA
TTGGAGGTGCTGGTTTTGCGCAATTGTCAGATTGCTACGTGGTGTGTAGA
GAGTTTGAGGAAAGCGTTGGGACACAGCAAGACATTACGACGTGTAGATT
TGCGTGGGAACCCTTTGGGGCGAGATGGAGTTCGTGAAGTTGTTGAAGGA
TTGAAGCAGTGCAAGACTTTGCTTGATTTGGATGTGGTGGGT
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