mRNA_M-pyrifera_M_contig122241.4587.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122241.4587.1
Unique NamemRNA_M-pyrifera_M_contig122241.4587.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122241.4587.1 vs. uniprot
Match: A0A7S0K1T0_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K1T0_CAFRO)

HSP 1 Score: 126 bits (317), Expect = 8.820e-31
Identity = 76/153 (49.67%), Postives = 98/153 (64.05%), Query Frame = 1
Query:    1 LGEAEQFFLALAEVDRPDTRARALLTQLTAPQRVKEAEDITQLLLNACTQIKTSASLAKVLGVILRITHQLNTAGKSEDTSDSSDLSVKAFRLSSLQRLSTTKAFDGKTTILQYLVRQLHRADDDEALALSKSLSLVGEASRHSIEALREELA 459
            LGEAE FF A+A+V +P  RA AL  Q    +RV E  +  +LL  AC+Q+  S SL + LG +LR+ HQLNTAGK      S+DL  +   ++SL +LS+TKAFDGKTT+L Y V Q  +A D EAL +SKSL L  +ASR  +  L  ELA
Sbjct:  233 LGEAEAFFAAMADVKKPKARAMALHYQRQFRERVSELLERYKLLHQACSQVSESQSLKRALGWVLRVGHQLNTAGKGS----SADLGTRGLAVTSLAKLSSTKAFDGKTTVLLYTVGQARKAGDTEALMVSKSLPLASDASRIQLANLFSELA 381          
BLAST of mRNA_M-pyrifera_M_contig122241.4587.1 vs. uniprot
Match: A0A5A8C7E2_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C7E2_CAFRO)

HSP 1 Score: 123 bits (308), Expect = 1.720e-29
Identity = 72/142 (50.70%), Postives = 93/142 (65.49%), Query Frame = 1
Query:    1 LGEAEQFFLALAEVDRPDTRARALLTQLTAPQRVKEAEDITQLLLNACTQIKTSASLAKVLGVILRITHQLNTAGKSEDTSDSSDLSVKAFRLSSLQRLSTTKAFDGKTTILQYLVRQLHRADDDEALALSKSLSLVGEASR 426
            LGEAE FF A+A+V +P  RA AL  Q    +RV E  +  +LL  AC+Q+  S SL + LG +LR+ HQLNTAGK      S+DL  +   ++SL +LS+TKAFDGKTT+L Y V Q  +A D EAL +SKSL L  +ASR
Sbjct: 1380 LGEAEAFFAAMADVKKPKARAMALHYQRQFRERVSELLERYKLLHQACSQVSESQSLKRALGWVLRVGHQLNTAGKGS----SADLGTRGLAVTSLAKLSSTKAFDGKTTVLLYTVGQARKAGDTEALMVSKSLPLASDASR 1517          
BLAST of mRNA_M-pyrifera_M_contig122241.4587.1 vs. uniprot
Match: A0A7S1G5T6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G5T6_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.080e-19
Identity = 61/156 (39.10%), Postives = 88/156 (56.41%), Query Frame = 1
Query:    1 LGEAEQFFLALAEVDRPDTRARALLTQLTAPQRVKEAEDITQLLLNACTQIKTSASLAKVLGVILRITHQLNTAGKSEDTSDSSDLSVKAFRLSSLQRLSTTKAFDGKTTILQYLVRQLHRADDDEALALSKSLSLVGEASRHSIEALREELAAIR 468
            LGEAE+FF AL EV     R  AL+ Q      V   +     +LNAC+Q++ S  L +V   +L + ++LN AG             + F+L SL RLS TKAF+ KTT+L +LV  + R D D +L LS+ L LV  A+R S++ +R EL+ ++
Sbjct:  689 LGEAERFFHALMEVPHLQRRVEALVYQRQFDGAVASLQLDAATMLNACSQVRESERLRRVFKAVLAVGNRLNAAGDEGGA-------ARGFKLQSLLRLSATKAFNNKTTVLHFLVSMIERGDRD-SLHLSEDLDLVHAAARLSLDIMRAELSTLK 836          
BLAST of mRNA_M-pyrifera_M_contig122241.4587.1 vs. uniprot
Match: A0A7S2K972_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K972_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.990e-15
Identity = 50/160 (31.25%), Postives = 85/160 (53.12%), Query Frame = 1
Query:    1 LGEAEQFFLALAEVDRPDTRARALLTQLTAPQRVKEAEDITQLLLNACTQIKTSASLAKVLGVILRITHQLNTAGKSEDTSDSSDLSVKAFRLSSLQRLSTTKAFDGKTTILQYLVRQLHRADDDEALALSKSLSLVGEASRHSIEALREELAAIRGELS 480
            LG  E++ +A+ EV  PD +   +  +    +R+ E      L L+AC +++ S  L K++ ++LRI + +NT G  +          K F L++L +L   KAFD KTT+LQYL++ + + D D        +  V EA R  ++AL  +L  + G+L+
Sbjct:  328 LGLCEKYMIAMLEVTDPDLKFETMTFRSVYEERLSEIVKPIDLALSACREVRESIKLRKLMALVLRIGNHINTGGSGK--------LAKGFTLAALLKLQEAKAFDKKTTVLQYLIKIVKKNDKD-LCTFKNDIKSVQEAERVQMDALAGDLKILNGDLT 478          
BLAST of mRNA_M-pyrifera_M_contig122241.4587.1 vs. uniprot
Match: A0A7S3HTK0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTK0_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 5.780e-15
Identity = 55/161 (34.16%), Postives = 81/161 (50.31%), Query Frame = 1
Query:    1 LGEAEQFFLALAEVDRPDTRARALLTQLTAPQRVKEAEDITQLLLNACTQIKTSASLAKVLGVILRITHQLNTAGKSEDTSDSSDLSVKAFRLSSLQRLSTTKAFDGKTTILQYLVRQLHRADDDEALALSKSLSLVGEASRHSIEALREELAAIRGELSN 483
            LG+AEQ+   +        R RA++ + T   R+ +       + NAC  +K S  L KVL  ILR+ +QLN   K E            F L SL +L + KAFD KT++LQY++  + R D D  L   + L  + EASR +++A+  E   +R E  N
Sbjct:  175 LGQAEQYMKVMLGFKSAPKRIRAMIFKQTYRIRINDCATKLTKIENACDDVKLSGRLKKVLKTILRVGNQLNDGEKHE-----------GFTLDSLLKLQSAKAFDRKTSVLQYVITLISRNDAD-CLLFPEDLKHISEASRLTLDAVNTERKGLREEFDN 323          
BLAST of mRNA_M-pyrifera_M_contig122241.4587.1 vs. uniprot
Match: A0A7S4MWB9_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MWB9_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 4.820e-14
Identity = 51/155 (32.90%), Postives = 84/155 (54.19%), Query Frame = 1
Query:   13 EQFFLALAEVDRPDTRARALLTQLTAPQRVKEAEDITQLLLNACTQIKTSASLAKVLGVILRITHQLNTAGKSEDTSDSSDLSVKAFRLSSLQRLSTTKAFDGKTTILQYLVRQLHRADDDEALALSKSLSLVGEASRHSIEALREELAAIRGEL 477
            E++ +A+ EV+    +   +L Q+    R+KE  D   +++ AC QI++S  L K++ VIL + +Q+NT G               F L +L +L   KAFD KT++LQYLV+ L R +D+  L   + LS   EA    I++L + +  ++ EL
Sbjct:  376 ERYMVAMMEVNNASAKFDCMLFQIEFETRMKEIVDEITIMIEACDQIRSSQRLRKLMAVILTLGNQINTGGTGN--------LAAGFSLDALLKLDEAKAFDKKTSVLQYLVK-LIRTNDESLLKFKEDLSKSTEAEGVLIDSLLQNMKQMKEEL 521          
BLAST of mRNA_M-pyrifera_M_contig122241.4587.1 vs. uniprot
Match: A0A7S3PZM8_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZM8_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 6.110e-14
Identity = 47/155 (30.32%), Postives = 86/155 (55.48%), Query Frame = 1
Query:   13 EQFFLALAEVDRPDTRARALLTQLTAPQRVKEAEDITQLLLNACTQIKTSASLAKVLGVILRITHQLNTAGKSEDTSDSSDLSVKAFRLSSLQRLSTTKAFDGKTTILQYLVRQLHRADDDEALALSKSLSLVGEASRHSIEALREELAAIRGEL 477
            E++ +A+ +V    ++   ++ Q+    R+ ++ED    L+NAC  +K S  L K++ +IL I +Q+NT G       S +L+   F L +L +L+  KAFD KT++LQYL+R + + +D E +   K +  + +A    ++ L  +L  +  EL
Sbjct:  308 EKYMVAMMDVSDASSKFNCMMFQIQFKSRIDDSEDAISTLMNACDDVKNSIRLRKLMAIILTIVNQINTGG-------SGNLAA-GFTLDALLKLNEAKAFDKKTSVLQYLIRVIKK-NDPEVIEFRKDIVSIEKAKGVMLDGLLGDLKQLTSEL 453          
BLAST of mRNA_M-pyrifera_M_contig122241.4587.1 vs. uniprot
Match: A0A7S1XVY3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVY3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.960e-13
Identity = 47/156 (30.13%), Postives = 87/156 (55.77%), Query Frame = 1
Query:    1 LGEAEQFFLALAEVDRPDTRARALLTQLTAPQRVKEAEDITQLLLNACTQIKTSASLAKVLGVILRITHQLNTAGKSEDTSDSSDLSVKAFRLSSLQRLSTTKAFDGKTTILQYLVRQLHRADDDEALALSKSLSLVGEASRHSIEALREELAAIR 468
            L EAE+F + + ++D+   R  A++ +    +R+++  +  Q +  AC  +K S     +L  IL+I +Q+N            +   KAF L +L++LS++KAFD +TT+L YLV  + R +D+  L +++ L+ V  ASR  ++ LR +   ++
Sbjct:  267 LNEAEKFMMEMLKLDKGSKRLEAMIYKSQFVERIQQIREDIQTIAKACDDLKMSGKFRTILRYILQIGNQMN------------EHEHKAFSLDALKKLSSSKAFDNRTTVLDYLVMVVKR-NDETLLDIAEELTGVQAASRVMMDTLRADFGQMK 409          
BLAST of mRNA_M-pyrifera_M_contig122241.4587.1 vs. uniprot
Match: A0A2R5G1I3_9STRA (Formin-like protein 3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G1I3_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.390e-12
Identity = 52/149 (34.90%), Postives = 80/149 (53.69%), Query Frame = 1
Query:    1 LGEAEQFFLALAEVDRPDTRARALLTQLTAPQRVKEAEDITQLLLNACTQIKTSASLAKVLGVILRITHQLN-TAGKSEDTSDSSDLSVKAFRLSSLQRLSTTKAFDGKTTILQYLVRQLHRADDDEALALSKSLSLVGEASRHSIEAL 444
            LG+ E  F  L  +     R +A   QL   Q+V EA++ TQ++L AC +I+ S++L + L VIL + + LN T+ +              F+L  L ++   KA D KTT+LQ++VR++        L L+K L  V +ASR S+ AL
Sbjct:  893 LGKIELLFRELGTISSLPQRIKAWTIQLRYKQQVAEAQEQTQMVLKACEEIEHSSALRQTLRVILALGNYLNGTSARG---------GAYGFKLDLLTKIENLKAADHKTTLLQFIVREIASKKHPVMLKLTKDLQHVADASRISVNAL 1032          
BLAST of mRNA_M-pyrifera_M_contig122241.4587.1 vs. uniprot
Match: A0A7S4W5J3_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W5J3_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 4.880e-12
Identity = 44/116 (37.93%), Postives = 65/116 (56.03%), Query Frame = 1
Query:    1 LGEAEQFFLALAEVDRPDTRARALLTQLTAPQRVKEAEDITQLLLNACTQIKTSASLAKVLGVILRITHQLNTAGKSEDTSDSSDLSVKAFRLSSLQRLSTTKAFDGKTTILQYLV 348
            L E E+F +A+  V  P  + RALL +L     +++ E    L+  AC ++  S    K+LG++L I ++LNTAG+S            AF + SL +L+  KAFD KTT LQY+V
Sbjct:  763 LCEIEKFMVAMMTVKYPKQKMRALLFKLQFASGIEDLEKDASLVEKACDELSQSVRFRKLLGIVLNIGNRLNTAGQSHKGK------AGAFTIDSLLKLNQAKAFDKKTTFLQYIV 872          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122241.4587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0K1T0_CAFRO8.820e-3149.67Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8C7E2_CAFRO1.720e-2950.70Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A7S1G5T6_9STRA1.080e-1939.10Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S2K972_9STRA1.990e-1531.25Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S3HTK0_9STRA5.780e-1534.16Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S4MWB9_9STRA4.820e-1432.90Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S3PZM8_9STRA6.110e-1430.32Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S1XVY3_9STRA6.960e-1330.13Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2R5G1I3_9STRA1.390e-1234.90Formin-like protein 3 n=1 Tax=Hondaea fermentalgia... [more]
A0A7S4W5J3_9STRA4.880e-1237.93Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122241contigM-pyrifera_M_contig122241:6..491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue1.6e-13
Seed eggNOG ortholog653948.CCA23131
KEGG koko:K18080
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,KOG2283@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Exons1
Model size486
Cds size486
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.395073-CDS-M-pyrifera_M_contig122241:5..4911622815742.395073-CDS-M-pyrifera_M_contig122241:5..491Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122241 6..491 +
1692277548.0703871-CDS-M-pyrifera_M_contig122241:5..4911692277548.0703871-CDS-M-pyrifera_M_contig122241:5..491Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122241 6..491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122241.4587.1prot_M-pyrifera_M_contig122241.4587.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122241 6..491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122241.4587.1

>prot_M-pyrifera_M_contig122241.4587.1 ID=prot_M-pyrifera_M_contig122241.4587.1|Name=mRNA_M-pyrifera_M_contig122241.4587.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp
LGEAEQFFLALAEVDRPDTRARALLTQLTAPQRVKEAEDITQLLLNACTQ
IKTSASLAKVLGVILRITHQLNTAGKSEDTSDSSDLSVKAFRLSSLQRLS
TTKAFDGKTTILQYLVRQLHRADDDEALALSKSLSLVGEASRHSIEALRE
ELAAIRGELSN*
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mRNA from alignment at M-pyrifera_M_contig122241:6..491+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122241.4587.1 ID=mRNA_M-pyrifera_M_contig122241.4587.1|Name=mRNA_M-pyrifera_M_contig122241.4587.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig122241:6..491+ (Macrocystis pyrifera P11B4 male)
TTGGGAGAAGCTGAACAATTTTTCCTAGCACTTGCTGAGGTTGATCGGCC TGATACACGTGCAAGAGCTCTCCTCACACAACTAACAGCACCTCAACGTG TAAAAGAAGCGGAGGATATTACACAATTGTTGTTAAACGCTTGTACACAA ATTAAAACTTCAGCATCATTAGCCAAAGTATTGGGTGTGATTTTGCGAAT TACGCATCAACTCAATACTGCTGGAAAGAGTGAAGATACAAGTGATTCTT CCGATCTCAGTGTCAAAGCGTTCCGCCTTTCATCGCTCCAACGCCTTTCT ACTACCAAAGCTTTTGATGGCAAAACGACAATTCTTCAATATCTTGTTCG TCAGTTGCACCGAGCAGATGACGATGAAGCATTAGCTCTCTCGAAATCTC TTTCATTGGTTGGAGAAGCTTCTCGTCATTCTATTGAAGCACTTCGCGAA GAACTTGCTGCGATTCGTGGGGAATTGTCAAATTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122241:6..491+

>mRNA_M-pyrifera_M_contig122241.4587.1 ID=mRNA_M-pyrifera_M_contig122241.4587.1|Name=mRNA_M-pyrifera_M_contig122241.4587.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig122241:6..491+ (Macrocystis pyrifera P11B4 male)
TTGGGAGAAGCTGAACAATTTTTCCTAGCACTTGCTGAGGTTGATCGGCC
TGATACACGTGCAAGAGCTCTCCTCACACAACTAACAGCACCTCAACGTG
TAAAAGAAGCGGAGGATATTACACAATTGTTGTTAAACGCTTGTACACAA
ATTAAAACTTCAGCATCATTAGCCAAAGTATTGGGTGTGATTTTGCGAAT
TACGCATCAACTCAATACTGCTGGAAAGAGTGAAGATACAAGTGATTCTT
CCGATCTCAGTGTCAAAGCGTTCCGCCTTTCATCGCTCCAACGCCTTTCT
ACTACCAAAGCTTTTGATGGCAAAACGACAATTCTTCAATATCTTGTTCG
TCAGTTGCACCGAGCAGATGACGATGAAGCATTAGCTCTCTCGAAATCTC
TTTCATTGGTTGGAGAAGCTTCTCGTCATTCTATTGAAGCACTTCGCGAA
GAACTTGCTGCGATTCGTGGGGAATTGTCAAATTGATTGGGAGAAGCTGA
ACAATTTTTCCTAGCACTTGCTGAGGTTGATCGGCCTGATACACGTGCAA
GAGCTCTCCTCACACAACTAACAGCACCTCAACGTGTAAAAGAAGCGGAG
GATATTACACAATTGTTGTTAAACGCTTGTACACAAATTAAAACTTCAGC
ATCATTAGCCAAAGTATTGGGTGTGATTTTGCGAATTACGCATCAACTCA
ATACTGCTGGAAAGAGTGAAGATACAAGTGATTCTTCCGATCTCAGTGTC
AAAGCGTTCCGCCTTTCATCGCTCCAACGCCTTTCTACTACCAAAGCTTT
TGATGGCAAAACGACAATTCTTCAATATCTTGTTCGTCAGTTGCACCGAG
CAGATGACGATGAAGCATTAGCTCTCTCGAAATCTCTTTCATTGGTTGGA
GAAGCTTCTCGTCATTCTATTGAAGCACTTCGCGAAGAACTTGCTGCGAT
TCGTGGGGAATTGTCAAATTGA
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