mRNA_M-pyrifera_M_contig121766.4473.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121766.4473.1
Unique NamemRNA_M-pyrifera_M_contig121766.4473.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121766.4473.1 vs. uniprot
Match: A0A381ZIS1_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381ZIS1_9ZZZZ)

HSP 1 Score: 170 bits (430), Expect = 1.420e-48
Identity = 90/147 (61.22%), Postives = 109/147 (74.15%), Query Frame = 1
Query:    1 AMAGINTARINVAAMCCGMLRESLRIAVSYADERRAFGRSTLEFQGLNWLLAEVATDLEAAAALTRDAIRCAERGDDPTLAAAHAKKFATRAAFDGVAECMQAMGAAGYDAAYPLARHLAAAKMAQFLDGTTQIQNVVIARALKTQY 441
            AMAGI  AR NVAAMCCG++  SL +A++Y  ERRAFG+   +FQGL W LA+VATDL AA  ++  A+   + G   T+ AAHAKKFATRAA +GVA CMQAMGA GY   YPLARHLA A+MA ++DGTT+IQNVVI+R L   Y
Sbjct:  254 AMAGIELARANVAAMCCGIMASSLEVALTYCTERRAFGQRIADFQGLQWQLADVATDLHAARLMSYAALEAIDAGSPATIPAAHAKKFATRAAQNGVANCMQAMGADGYKHDYPLARHLACARMANYIDGTTEIQNVVISRELLRPY 400          
BLAST of mRNA_M-pyrifera_M_contig121766.4473.1 vs. uniprot
Match: A0A2E9Y2W4_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E9Y2W4_9PROT)

HSP 1 Score: 164 bits (416), Expect = 1.050e-46
Identity = 87/143 (60.84%), Postives = 109/143 (76.22%), Query Frame = 1
Query:    1 AMAGINTARINVAAMCCGMLRESLRIAVSYADERRAFGRSTLEFQGLNWLLAEVATDLEAAAALTRDAIRCAERGDDPTLAAAHAKKFATRAAFDGVAECMQAMGAAGYDAAYPLARHLAAAKMAQFLDGTTQIQNVVIARAL 429
            AMAGI+ AR NVAAMC GM+  SL +A++YA ERRAFG+  L+FQG+ W LA+VATDL A+  +   A+   + G    + AAHAKKFATRAA  G+A+CMQAMGA GY   +PLARHLA AKMAQ++DG+T+IQNVVI+R L
Sbjct:  234 AMAGIDLARANVAAMCSGMMANSLEVALAYAAERRAFGQRILDFQGVQWQLADVATDLHASHLMAYAALAAIDAGQPAAIPAAHAKKFATRAALAGIAQCMQAMGADGYKHDFPLARHLACAKMAQYIDGSTEIQNVVISRDL 376          
BLAST of mRNA_M-pyrifera_M_contig121766.4473.1 vs. uniprot
Match: A0A2E8YGJ6_9GAMM (Uncharacterized protein n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A2E8YGJ6_9GAMM)

HSP 1 Score: 161 bits (407), Expect = 2.060e-45
Identity = 86/143 (60.14%), Postives = 103/143 (72.03%), Query Frame = 1
Query:    1 AMAGINTARINVAAMCCGMLRESLRIAVSYADERRAFGRSTLEFQGLNWLLAEVATDLEAAAALTRDAIRCAERGDDPTLAAAHAKKFATRAAFDGVAECMQAMGAAGYDAAYPLARHLAAAKMAQFLDGTTQIQNVVIARAL 429
            AM GI+ ARINVAAMC GML  +L +A  Y   R AFG++   FQG+ W+LA+VATDL A   L  DA R +  G+  T+AAAHAKKFATR A   +A+CMQ MGA G    +PLARHLAAAK AQ+LDG T+IQNVVI+RAL
Sbjct:  231 AMQGIDLARINVAAMCAGMLERALDVATEYVSSRTAFGKTVSAFQGVQWMLADVATDLVAVRLLAADAARLSXAGEAXTVAAAHAKKFATRVALSRIADCMQVMGATGLSREFPLARHLAAAKXAQYLDGATEIQNVVISRAL 373          
BLAST of mRNA_M-pyrifera_M_contig121766.4473.1 vs. uniprot
Match: A0A0A3YPQ3_BRAJP (Uncharacterized protein n=5 Tax=Bradyrhizobium japonicum TaxID=375 RepID=A0A0A3YPQ3_BRAJP)

HSP 1 Score: 157 bits (397), Expect = 7.660e-44
Identity = 87/146 (59.59%), Postives = 109/146 (74.66%), Query Frame = 1
Query:    1 AMAGINTARINVAAMCCGMLRESLRIAVSYADERRAFGRSTLEFQGLNWLLAEVATDLEAAAALTRDAIRCAERGDDPTLAAAHAKKFATRAAFDGVAECMQAMGAAGYDAAYPLARHLAAAKMAQFLDGTTQIQNVVIARALKTQ 438
            AM+GI+ AR  V+AMCCGML+ SL  A+    ER AFG  T+EFQGL W+LA+VATDL A+  L   A    +RG+  T+ AAHAKKFATRAAF+GVA+CMQ  GA G  A  P++RHLA+AK AQ+LDGTT+IQNVVI+R L+ +
Sbjct:  238 AMSGIDVARTLVSAMCCGMLQSSLTHALKATAERSAFGSRTIEFQGLQWMLADVATDLSASELLFAAAAAKLDRGERATIEAAHAKKFATRAAFNGVAQCMQLSGARGLLADTPISRHLASAKAAQYLDGTTEIQNVVISRFLQVR 383          
BLAST of mRNA_M-pyrifera_M_contig121766.4473.1 vs. uniprot
Match: W4LDG3_9BACT (Uncharacterized protein n=3 Tax=Candidatus Entotheonella TaxID=93171 RepID=W4LDG3_9BACT)

HSP 1 Score: 155 bits (393), Expect = 2.760e-43
Identity = 89/145 (61.38%), Postives = 107/145 (73.79%), Query Frame = 1
Query:    1 AMAGINTARINVAAMCCGMLRESLRIAVSYADERRAFGRSTLEFQGLNWLLAEVATDLEAAAALTRDAIRCAERGDDPTLA--AAHAKKFATRAAFDGVAECMQAMGAAGYDAAYPLARHLAAAKMAQFLDGTTQIQNVVIARAL 429
            AM  I+ ARI V+AMC GMLR  L  AV Y   R+AFG    E QGL W+LA+VATDLEA+ ALTR A    + GD P++   AAHAKKFATR   DG+++CMQA+GA G+   +PLARHLA AKMAQ+LDGTT+IQNVVIAR+L
Sbjct:  235 AMEAIDIARIVVSAMCAGMLRRGLETAVDYIKNRQAFGAPLSERQGLQWMLADVATDLEASIALTRAASAALDAGD-PSMGVRAAHAKKFATRVTMDGLSQCMQALGANGFRQDWPLARHLACAKMAQYLDGTTEIQNVVIARSL 378          
BLAST of mRNA_M-pyrifera_M_contig121766.4473.1 vs. uniprot
Match: A0A2D6TAM2_9PROT (Acyl-CoA dehydrogenase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6TAM2_9PROT)

HSP 1 Score: 155 bits (393), Expect = 2.940e-43
Identity = 88/145 (60.69%), Postives = 107/145 (73.79%), Query Frame = 1
Query:    1 AMAGINTARINVAAMCCGMLRESLRIAVSYADERRAFGRSTLEFQGLNWLLAEVATDLEAAAALTRDAIRCAERGDDPT-LAAAHAKKFATRAAFDGVAECMQAMGAAGYDAAYPLARHLAAAKMAQFLDGTTQIQNVVIARALK 432
            A+ GI+ ARI VAA CCGMLR  +  A+ YA +RRAFG++T EFQGL W+LA+  TD  AA  LT +A R  + GD    LAAAHAKKF+ R     +A+CMQ MGAAGY   YPLARHLAAAKMAQ +DGTT+IQNVVI+RA++
Sbjct:  236 ALHGIDIARIVVAAACCGMLRTGIDTALEYATQRRAFGQATAEFQGLQWMLADAETDWWAARLLTVEAGRLHDAGDPGAPLAAAHAKKFSPRVCLARLADCMQVMGAAGYRHDYPLARHLAAAKMAQIVDGTTEIQNVVISRAMQ 380          
BLAST of mRNA_M-pyrifera_M_contig121766.4473.1 vs. uniprot
Match: A0A2E3P4L2_9PROT (Acyl-CoA dehydrogenase n=3 Tax=Rhodospirillales TaxID=204441 RepID=A0A2E3P4L2_9PROT)

HSP 1 Score: 156 bits (394), Expect = 3.100e-43
Identity = 88/147 (59.86%), Postives = 103/147 (70.07%), Query Frame = 1
Query:    1 AMAGINTARINVAAMCCGMLRESLRIAVSYADERRAFGRSTLEFQGLNWLLAEVATDLEAAAALTRDAIRCAERGDDPTLAAAHAKKFATRAAFDGVAECMQAMGAAGYDAAYPLARHLAAAKMAQFLDGTTQIQNVVIARALKTQY 441
            AMAGIN AR+ VAA+CCGML E L  A++Y  +R AFGR  L  QGL W LA+VATDLEA   LT  A R  + G+      AHAKKFATRAA  G++ CMQAMGAAG  A  P  RH AAAKM +FLDGTT+IQN+VI+R+L   Y
Sbjct:  252 AMAGINMARMFVAALCCGMLAECLDRALAYGAQRMAFGRPILANQGLQWELADVATDLEACRRLTEHAARTLDAGEAGIAECAHAKKFATRAAVRGISACMQAMGAAGLRAEEPFGRHFAAAKMCEFLDGTTEIQNMVISRSLLRPY 398          
BLAST of mRNA_M-pyrifera_M_contig121766.4473.1 vs. uniprot
Match: A0A352GQ37_9PROT (Acyl-CoA dehydrogenase n=3 Tax=Rhodospirillales TaxID=204441 RepID=A0A352GQ37_9PROT)

HSP 1 Score: 155 bits (391), Expect = 5.940e-43
Identity = 87/143 (60.84%), Postives = 102/143 (71.33%), Query Frame = 1
Query:    1 AMAGINTARINVAAMCCGMLRESLRIAVSYADERRAFGRSTLEFQGLNWLLAEVATDLEAAAALTRDAIRCAERGDDPTLAAAHAKKFATRAAFDGVAECMQAMGAAGYDAAYPLARHLAAAKMAQFLDGTTQIQNVVIARAL 429
            AMAGIN AR+ VAA+CCGML E L  A++Y  +R AFGR  L  QGL W LA+VATDLEA   LT  A R  + G+      AHAKKF+TRAA  G++ CMQAMGAAG  A  P  RH AAAKM +FLDGTT+IQNVVI+R+L
Sbjct:  234 AMAGINMARMFVAALCCGMLAECLDRALAYGAQRMAFGRPILANQGLQWELADVATDLEACRRLTEHAARTLDAGEAGITECAHAKKFSTRAAVRGISACMQAMGAAGLRAEEPFGRHFAAAKMCEFLDGTTEIQNVVISRSL 376          
BLAST of mRNA_M-pyrifera_M_contig121766.4473.1 vs. uniprot
Match: A0A1H0BA32_9BRAD (Acyl-CoA dehydrogenase n=1 Tax=Afipia sp. GAS231 TaxID=1882747 RepID=A0A1H0BA32_9BRAD)

HSP 1 Score: 154 bits (390), Expect = 6.340e-43
Identity = 82/146 (56.16%), Postives = 107/146 (73.29%), Query Frame = 1
Query:    1 AMAGINTARINVAAMCCGMLRESLRIAVSYADERRAFGRSTLEFQGLNWLLAEVATDLEAAAALTRDAIRCAERGDDPTLAAAHAKKFATRAAFDGVAECMQAMGAAGYDAAYPLARHLAAAKMAQFLDGTTQIQNVVIARALKTQ 438
            AM+GI+ AR  V+AMCCGML  SL  A+    ER AFG  T++FQGL W+LA++ATDL A+  L   A    +RG+  T+ AAHAKKF T+AAF+G+A+CMQ  GA G  A  P++RHLA+AK AQ+LDGTT+IQNVVI+R L+ +
Sbjct:  225 AMSGIDVARTLVSAMCCGMLESSLAYALKSTSERSAFGSKTIDFQGLQWMLADIATDLSASELLFTAAASKLDRGERATIEAAHAKKFTTKAAFNGIAQCMQLAGARGLLAETPISRHLASAKAAQYLDGTTEIQNVVISRFLQAR 370          
BLAST of mRNA_M-pyrifera_M_contig121766.4473.1 vs. uniprot
Match: A0A848YFI2_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A848YFI2_9HYPH)

HSP 1 Score: 152 bits (384), Expect = 6.210e-42
Identity = 89/149 (59.73%), Postives = 103/149 (69.13%), Query Frame = 1
Query:    1 AMAGINTARINVAAMCCGMLRESLRIAVSYADERRAFGRSTLEFQGLNWLLAEVATDLEAAAALTRDAIRCAERGDDPTLAAAHAKKFATRAAFDGVAECMQAMGAAGYDAAYPLARHLAAAKMAQFLDGTTQIQNVVIARALKTQYAD 447
            AMAGI+ AR  VAAMC G+LR  L  A+     R AFGR   E QGL W +A+V+T L A + L  DA R  ER      AAAHAKKFAT AAF G+  CMQA+GA G    +PLARHLAAAKMAQ+LDGTT+IQNVVI+RAL+  YAD
Sbjct:  235 AMAGIDIARACVAAMCVGLLRAGLDTAMPRLMSRSAFGRPLAEQQGLQWQMADVSTSLRACSLLAYDAARLIERDGAAPEAAAHAKKFATEAAFAGLQACMQAVGADGLKQEFPLARHLAAAKMAQYLDGTTEIQNVVISRALQKAYAD 383          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121766.4473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A381ZIS1_9ZZZZ1.420e-4861.22Uncharacterized protein n=1 Tax=marine metagenome ... [more]
A0A2E9Y2W4_9PROT1.050e-4660.84Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A2E8YGJ6_9GAMM2.060e-4560.14Uncharacterized protein n=1 Tax=Thiotrichales bact... [more]
A0A0A3YPQ3_BRAJP7.660e-4459.59Uncharacterized protein n=5 Tax=Bradyrhizobium jap... [more]
W4LDG3_9BACT2.760e-4361.38Uncharacterized protein n=3 Tax=Candidatus Entothe... [more]
A0A2D6TAM2_9PROT2.940e-4360.69Acyl-CoA dehydrogenase n=1 Tax=Rhodospirillaceae b... [more]
A0A2E3P4L2_9PROT3.100e-4359.86Acyl-CoA dehydrogenase n=3 Tax=Rhodospirillales Ta... [more]
A0A352GQ37_9PROT5.940e-4360.84Acyl-CoA dehydrogenase n=3 Tax=Rhodospirillales Ta... [more]
A0A1H0BA32_9BRAD6.340e-4356.16Acyl-CoA dehydrogenase n=1 Tax=Afipia sp. GAS231 T... [more]
A0A848YFI2_9HYPH6.210e-4259.73Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121766contigM-pyrifera_M_contig121766:78..530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score139.8
Seed ortholog evalue1e-30
Seed eggNOG ortholog1205680.CAKO01000038_gene1742
KEGG rclassRC00095
KEGG koko:K19745
KEGG ReactionR00919
KEGG Pathwayko00640,ko01100,map00640,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG1960 Acyl-CoA dehydrogenases
EggNOG OGs1MUDR@1224,2JPPM@204441,2TQKE@28211,COG1960@1,COG1960@2
COG Functional cat.I
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size453
Cds size450
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.8959315-CDS-M-pyrifera_M_contig121766:77..5271622815736.8959315-CDS-M-pyrifera_M_contig121766:77..527Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121766 78..527 -
1692277545.5096068-CDS-M-pyrifera_M_contig121766:77..5271692277545.5096068-CDS-M-pyrifera_M_contig121766:77..527Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121766 78..527 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815736.909913-UTR-M-pyrifera_M_contig121766:527..5301622815736.909913-UTR-M-pyrifera_M_contig121766:527..530Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121766 528..530 -
1692277545.5198815-UTR-M-pyrifera_M_contig121766:527..5301692277545.5198815-UTR-M-pyrifera_M_contig121766:527..530Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121766 528..530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121766.4473.1prot_M-pyrifera_M_contig121766.4473.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121766 78..527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121766.4473.1

>prot_M-pyrifera_M_contig121766.4473.1 ID=prot_M-pyrifera_M_contig121766.4473.1|Name=mRNA_M-pyrifera_M_contig121766.4473.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
MAGINTARINVAAMCCGMLRESLRIAVSYADERRAFGRSTLEFQGLNWLL
AEVATDLEAAAALTRDAIRCAERGDDPTLAAAHAKKFATRAAFDGVAECM
QAMGAAGYDAAYPLARHLAAAKMAQFLDGTTQIQNVVIARALKTQYADL*
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mRNA from alignment at M-pyrifera_M_contig121766:78..530-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121766.4473.1 ID=mRNA_M-pyrifera_M_contig121766.4473.1|Name=mRNA_M-pyrifera_M_contig121766.4473.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig121766:78..530- (Macrocystis pyrifera P11B4 male)
GCCATGGCCGGTATCAACACGGCGCGCATCAATGTCGCCGCTATGTGTTG CGGCATGTTGCGCGAAAGTCTCCGCATCGCCGTGAGCTATGCTGATGAAC GCCGTGCGTTCGGTCGTTCGACCCTGGAGTTTCAGGGATTGAACTGGCTG CTCGCCGAAGTCGCGACCGATCTCGAAGCCGCCGCCGCGCTCACCCGTGA TGCCATCCGATGCGCGGAGCGCGGTGACGATCCGACGCTGGCGGCGGCGC ATGCGAAAAAATTCGCGACCCGTGCCGCATTCGACGGCGTGGCCGAATGT ATGCAGGCGATGGGCGCGGCGGGGTACGATGCCGCGTATCCGTTGGCGCG CCATCTCGCGGCGGCGAAAATGGCGCAGTTCCTCGATGGTACGACGCAAA TCCAGAATGTCGTGATCGCACGCGCACTGAAAACGCAATACGCCGACCTT TAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121766:78..530-

>mRNA_M-pyrifera_M_contig121766.4473.1 ID=mRNA_M-pyrifera_M_contig121766.4473.1|Name=mRNA_M-pyrifera_M_contig121766.4473.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig121766:78..530- (Macrocystis pyrifera P11B4 male)
ATGGCCGGTATCAACACGGCGCGCATCAATGTCGCCGCTATGTGTTGCGG
CATGTTGCGCGAAAGTCTCCGCATCGCCGTGAGCTATGCTGATGAACGCC
GTGCGTTCGGTCGTTCGACCCTGGAGTTTCAGGGATTGAACTGGCTGCTC
GCCGAAGTCGCGACCGATCTCGAAGCCGCCGCCGCGCTCACCCGTGATGC
CATCCGATGCGCGGAGCGCGGTGACGATCCGACGCTGGCGGCGGCGCATG
CGAAAAAATTCGCGACCCGTGCCGCATTCGACGGCGTGGCCGAATGTATG
CAGGCGATGGGCGCGGCGGGGTACGATGCCGCGTATCCGTTGGCGCGCCA
TCTCGCGGCGGCGAAAATGGCGCAGTTCCTCGATGGTACGACGCAAATCC
AGAATGTCGTGATCGCACGCGCACTGAAAACGCAATACGCCGACCTTTAA
ATGGCCGGTATCAACACGGCGCGCATCAATGTCGCCGCTATGTGTTGCGG
CATGTTGCGCGAAAGTCTCCGCATCGCCGTGAGCTATGCTGATGAACGCC
GTGCGTTCGGTCGTTCGACCCTGGAGTTTCAGGGATTGAACTGGCTGCTC
GCCGAAGTCGCGACCGATCTCGAAGCCGCCGCCGCGCTCACCCGTGATGC
CATCCGATGCGCGGAGCGCGGTGACGATCCGACGCTGGCGGCGGCGCATG
CGAAAAAATTCGCGACCCGTGCCGCATTCGACGGCGTGGCCGAATGTATG
CAGGCGATGGGCGCGGCGGGGTACGATGCCGCGTATCCGTTGGCGCGCCA
TCTCGCGGCGGCGAAAATGGCGCAGTTCCTCGATGGTACGACGCAAATCC
AGAATGTCGTGATCGCACGCGCACTGAAAACGCAATACGCCGACCTTTAA
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