mRNA_M-pyrifera_M_contig120896.4299.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120896.4299.1
Unique NamemRNA_M-pyrifera_M_contig120896.4299.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120896.4299.1 vs. uniprot
Match: A0A6H5JAV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAV0_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.850e-12
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 FRCRVKGGHPSMTCEQYETRRRHEDVYQCPGCRVYVVKGDGETALS 138
            + CRV GGH   TCEQYE  R H+DV +CPGC VYVVKGDG  ++S
Sbjct:  136 YPCRVVGGHHPQTCEQYEAGRGHQDVCKCPGCGVYVVKGDGCDSIS 181
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BLAST of mRNA_M-pyrifera_M_contig120896.4299.1 vs. uniprot
Match: D7G6K5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K5_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 3.850e-12
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 FRCRVKGGHPSMTCEQYETRRRHEDVYQCPGCRVYVVKGDGETALS 138
            + CRV GGH   TCEQYE  R H+DV +CPGC VYVVKGDG  ++S
Sbjct:  322 YPCRVVGGHHPQTCEQYEAGRGHQDVCKCPGCGVYVVKGDGCDSIS 367
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120896.4299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JAV0_9PHAE3.850e-1263.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6K5_ECTSI3.850e-1263.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120896contigM-pyrifera_M_contig120896:324..467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue1.6e-09
Seed eggNOG ortholog2880.D7G6K5
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2EGD3@1,2SAJF@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.3678434-CDS-M-pyrifera_M_contig120896:323..4671622815728.3678434-CDS-M-pyrifera_M_contig120896:323..467Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120896 324..467 -
1692277541.5530858-CDS-M-pyrifera_M_contig120896:323..4671692277541.5530858-CDS-M-pyrifera_M_contig120896:323..467Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120896 324..467 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120896.4299.1prot_M-pyrifera_M_contig120896.4299.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120896 324..467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120896.4299.1

>prot_M-pyrifera_M_contig120896.4299.1 ID=prot_M-pyrifera_M_contig120896.4299.1|Name=mRNA_M-pyrifera_M_contig120896.4299.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=48bp
FRCRVKGGHPSMTCEQYETRRRHEDVYQCPGCRVYVVKGDGETALSTF
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mRNA from alignment at M-pyrifera_M_contig120896:324..467-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120896.4299.1 ID=mRNA_M-pyrifera_M_contig120896.4299.1|Name=mRNA_M-pyrifera_M_contig120896.4299.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=144bp|location=Sequence derived from alignment at M-pyrifera_M_contig120896:324..467- (Macrocystis pyrifera P11B4 male)
TTCAGATGTCGCGTCAAGGGCGGTCATCCCTCGATGACCTGCGAGCAATA
CGAGACGCGACGCAGGCACGAAGACGTCTACCAGTGCCCTGGCTGCAGGG
TGTACGTCGTGAAGGGCGACGGTGAGACGGCGCTGAGCACCTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120896:324..467-

>mRNA_M-pyrifera_M_contig120896.4299.1 ID=mRNA_M-pyrifera_M_contig120896.4299.1|Name=mRNA_M-pyrifera_M_contig120896.4299.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig120896:324..467- (Macrocystis pyrifera P11B4 male)
TTCAGATGTCGCGTCAAGGGCGGTCATCCCTCGATGACCTGCGAGCAATA
CGAGACGCGACGCAGGCACGAAGACGTCTACCAGTGCCCTGGCTGCAGGG
TGTACGTCGTGAAGGGCGACGGTGAGACGGCGCTGAGCACCTTTTTCAGA
TGTCGCGTCAAGGGCGGTCATCCCTCGATGACCTGCGAGCAATACGAGAC
GCGACGCAGGCACGAAGACGTCTACCAGTGCCCTGGCTGCAGGGTGTACG
TCGTGAAGGGCGACGGTGAGACGGCGCTGAGCACCTTT
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