mRNA_M-pyrifera_M_contig120824.4285.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120824.4285.1
Unique NamemRNA_M-pyrifera_M_contig120824.4285.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120824.4285.1 vs. uniprot
Match: A0A5A8D508_CAFRO (T-complex protein 1 subunit epsilon n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D508_CAFRO)

HSP 1 Score: 197 bits (500), Expect = 2.920e-58
Identity = 95/121 (78.51%), Postives = 114/121 (94.21%), Query Frame = 1
Query:    1 ANILAARTVSSVLRTSLGPKGMDKMLVSPDGDVTITNDGATILAKMEVEHKVAKLMVELSASQDDEIGDGTTGVVVLAGALLEQAEHLLDRGIHPIRVSEGFEVACQAAVEHLESIAERIE 363
            ANI+AARTV+S+LRTSLGP+GMDKM+VSPDG+VTITNDGATIL +++VEH+VAKL+VEL+ SQDDEIGDGTTGVVVLAGALLEQAEHLLDRGIHP+R+++GFE AC  AV+HL  I+ER+E
Sbjct:   32 ANIMAARTVTSILRTSLGPRGMDKMMVSPDGEVTITNDGATILQRLQVEHEVAKLIVELATSQDDEIGDGTTGVVVLAGALLEQAEHLLDRGIHPVRIADGFEEACSIAVDHLAKISERVE 152          
BLAST of mRNA_M-pyrifera_M_contig120824.4285.1 vs. uniprot
Match: A0A8J2SYN6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYN6_9STRA)

HSP 1 Score: 190 bits (483), Expect = 3.420e-58
Identity = 95/119 (79.83%), Postives = 109/119 (91.60%), Query Frame = 1
Query:    4 NILAARTVSSVLRTSLGPKGMDKMLVSPDGDVTITNDGATILAKMEVEHKVAKLMVELSASQDDEIGDGTTGVVVLAGALLEQAEHLLDRGIHPIRVSEGFEVACQAAVEHLESIAERI 360
            NI+AAR+VS +LRTSLGPKGMDKM+VSPDGDVTITNDGATIL KM VEH+VA+L+VELS SQDDEIGDGTTGVVVLAGALLEQAE LLDRG+HP+RV+EGFE ACQ ++E LE IA+ +
Sbjct:   33 NIMAARSVSGLLRTSLGPKGMDKMMVSPDGDVTITNDGATILDKMAVEHQVARLLVELSQSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGLHPVRVAEGFEAACQVSLETLEKIADTV 151          
BLAST of mRNA_M-pyrifera_M_contig120824.4285.1 vs. uniprot
Match: A0A7S0SVM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SVM0_9STRA)

HSP 1 Score: 186 bits (472), Expect = 7.940e-58
Identity = 91/120 (75.83%), Postives = 112/120 (93.33%), Query Frame = 1
Query:    4 NILAARTVSSVLRTSLGPKGMDKMLVSPDGDVTITNDGATILAKMEVEHKVAKLMVELSASQDDEIGDGTTGVVVLAGALLEQAEHLLDRGIHPIRVSEGFEVACQAAVEHLESIAERIE 363
            NI+AAR+VS++LRTSLGPKGMDKMLVS DGDVTITNDGATIL KMEVEH+VAKL+V+LS SQD+EIGDGTTGV VLAGALLEQAE LLDRG+HP+R++EGFE+A + A++HL +I++++E
Sbjct:   33 NIMAARSVSNLLRTSLGPKGMDKMLVSSDGDVTITNDGATILQKMEVEHQVAKLLVDLSKSQDNEIGDGTTGVTVLAGALLEQAERLLDRGLHPVRIAEGFELASEVALKHLATISDKVE 152          
BLAST of mRNA_M-pyrifera_M_contig120824.4285.1 vs. uniprot
Match: D7FI32_ECTSI (T-complex protein 1 subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI32_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 8.080e-58
Identity = 97/120 (80.83%), Postives = 112/120 (93.33%), Query Frame = 1
Query:    4 NILAARTVSSVLRTSLGPKGMDKMLVSPDGDVTITNDGATILAKMEVEHKVAKLMVELSASQDDEIGDGTTGVVVLAGALLEQAEHLLDRGIHPIRVSEGFEVACQAAVEHLESIAERIE 363
            NILAAR+VS++LR+SLGPKGMDKMLVSPDGDVTI+NDGATIL KM+VEH+VA+L+VELS SQDDEIGDGTTGVVV+AGALLEQAE LLDRGIHP+R+ EGF+ ACQ AVEHLE IA+ +E
Sbjct:   33 NILAARSVSNILRSSLGPKGMDKMLVSPDGDVTISNDGATILDKMQVEHQVARLLVELSQSQDDEIGDGTTGVVVMAGALLEQAEKLLDRGIHPVRIGEGFDRACQTAVEHLEKIADAVE 152          
BLAST of mRNA_M-pyrifera_M_contig120824.4285.1 vs. uniprot
Match: A0A7S3K1X2_9STRA (T-complex protein 1 subunit epsilon n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1X2_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.620e-57
Identity = 99/120 (82.50%), Postives = 110/120 (91.67%), Query Frame = 1
Query:    4 NILAARTVSSVLRTSLGPKGMDKMLVSPDGDVTITNDGATILAKMEVEHKVAKLMVELSASQDDEIGDGTTGVVVLAGALLEQAEHLLDRGIHPIRVSEGFEVACQAAVEHLESIAERIE 363
            NILAAR VS ++RTSLGPKGMDKMLVSPDGDVTITNDGATIL KM VEH+VA+LMVELSASQD+EIGDGTTGVVVLAGALLEQAE LLDRG+HP+R++EGFE AC  A +HLE IAE+IE
Sbjct:   33 NILAARLVSGLVRTSLGPKGMDKMLVSPDGDVTITNDGATILDKMAVEHQVARLMVELSASQDEEIGDGTTGVVVLAGALLEQAEKLLDRGLHPVRIAEGFEKACAVASQHLEEIAEKIE 152          
BLAST of mRNA_M-pyrifera_M_contig120824.4285.1 vs. uniprot
Match: A0A6V7IK30_9HYME (Uncharacterized protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7IK30_9HYME)

HSP 1 Score: 184 bits (468), Expect = 4.130e-57
Identity = 89/117 (76.07%), Postives = 109/117 (93.16%), Query Frame = 1
Query:    4 NILAARTVSSVLRTSLGPKGMDKMLVSPDGDVTITNDGATILAKMEVEHKVAKLMVELSASQDDEIGDGTTGVVVLAGALLEQAEHLLDRGIHPIRVSEGFEVACQAAVEHLESIAE 354
            +ILAAR++++ LRTSLGP+G+DK++VSPDGDVT+TNDGATIL KM+V+H++AKLMV+LS SQDDEIGDGTTGVVVLAGALLEQAE LLD+GIHPIR+++GFE+A Q AVEHL  IAE
Sbjct:    2 HILAARSIANTLRTSLGPRGLDKLMVSPDGDVTVTNDGATILKKMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAESLLDKGIHPIRIADGFELAAQCAVEHLNRIAE 118          
BLAST of mRNA_M-pyrifera_M_contig120824.4285.1 vs. uniprot
Match: A0A7S1XSM7_9STRA (T-complex protein 1 subunit epsilon n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSM7_9STRA)

HSP 1 Score: 193 bits (490), Expect = 9.730e-57
Identity = 97/118 (82.20%), Postives = 109/118 (92.37%), Query Frame = 1
Query:    1 ANILAARTVSSVLRTSLGPKGMDKMLVSPDGDVTITNDGATILAKMEVEHKVAKLMVELSASQDDEIGDGTTGVVVLAGALLEQAEHLLDRGIHPIRVSEGFEVACQAAVEHLESIAE 354
            ANILAAR+VSSVLRTSLGPKGMDKMLV+PDGDVT++NDGATIL KMEVEH+VA+L+VELS SQDDEIGDGTTGVVVLAGALLEQAE LLDRGIHP+RV+EGFE AC+ A  HL  I++
Sbjct:   39 ANILAARSVSSVLRTSLGPKGMDKMLVNPDGDVTVSNDGATILEKMEVEHQVARLLVELSRSQDDEIGDGTTGVVVLAGALLEQAERLLDRGIHPVRVAEGFEKACEVATRHLADISD 156          
BLAST of mRNA_M-pyrifera_M_contig120824.4285.1 vs. uniprot
Match: A0A0C3PT43_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3PT43_9AGAM)

HSP 1 Score: 188 bits (478), Expect = 1.010e-56
Identity = 89/120 (74.17%), Postives = 114/120 (95.00%), Query Frame = 1
Query:    4 NILAARTVSSVLRTSLGPKGMDKMLVSPDGDVTITNDGATILAKMEVEHKVAKLMVELSASQDDEIGDGTTGVVVLAGALLEQAEHLLDRGIHPIRVSEGFEVACQAAVEHLESIAERIE 363
            +ILAARTV+++LRTSLGP+G+DK+L+SPDGD+T+TNDGATIL++MEVEH++AKLMV+LS SQDDEIGDGTTGVVVLAGALLEQ+E LLDRGIHPIR+++GFE AC  AV+HL+ I++++E
Sbjct:   39 HILAARTVANILRTSLGPRGLDKILISPDGDITVTNDGATILSQMEVEHQIAKLMVQLSKSQDDEIGDGTTGVVVLAGALLEQSEALLDRGIHPIRIADGFERACGVAVDHLDGISDQVE 158          
BLAST of mRNA_M-pyrifera_M_contig120824.4285.1 vs. uniprot
Match: A0A7S2XY11_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY11_9STRA)

HSP 1 Score: 186 bits (471), Expect = 3.760e-56
Identity = 92/121 (76.03%), Postives = 111/121 (91.74%), Query Frame = 1
Query:    1 ANILAARTVSSVLRTSLGPKGMDKMLVSPDGDVTITNDGATILAKMEVEHKVAKLMVELSASQDDEIGDGTTGVVVLAGALLEQAEHLLDRGIHPIRVSEGFEVACQAAVEHLESIAERIE 363
            ANILAAR VS+VLR+SLGPKGMDKMLV+ DGDVTI+NDGATIL KMEV+H+VAKL+VELS SQD+EIGDGTTGVVVLAGALLEQA+ LLDRGIHP+R++EG+E AC  A++HL  IA++++
Sbjct:   30 ANILAARAVSNVLRSSLGPKGMDKMLVNSDGDVTISNDGATILEKMEVDHQVAKLLVELSQSQDNEIGDGTTGVVVLAGALLEQADKLLDRGIHPVRIAEGYERACTVALDHLNQIADKVD 150          
BLAST of mRNA_M-pyrifera_M_contig120824.4285.1 vs. uniprot
Match: A0A6U3ULQ3_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3ULQ3_9STRA)

HSP 1 Score: 191 bits (486), Expect = 3.770e-56
Identity = 96/120 (80.00%), Postives = 111/120 (92.50%), Query Frame = 1
Query:    4 NILAARTVSSVLRTSLGPKGMDKMLVSPDGDVTITNDGATILAKMEVEHKVAKLMVELSASQDDEIGDGTTGVVVLAGALLEQAEHLLDRGIHPIRVSEGFEVACQAAVEHLESIAERIE 363
            NILAAR++S++LRTSLGPKGMDKMLVSPDGDVTITNDGATIL +M V+H+VAKLMVELSASQDDEIGDGTTGVVVLAGALLEQAE LL+RGIHP+RV+EGFE A + A+E L+ I +R+E
Sbjct:   33 NILAARSISNILRTSLGPKGMDKMLVSPDGDVTITNDGATILDRMHVDHQVAKLMVELSASQDDEIGDGTTGVVVLAGALLEQAEKLLNRGIHPVRVAEGFEKAAEVAIETLDKIGDRVE 152          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120824.4285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8D508_CAFRO2.920e-5878.51T-complex protein 1 subunit epsilon n=1 Tax=Cafete... [more]
A0A8J2SYN6_9STRA3.420e-5879.83Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0SVM0_9STRA7.940e-5875.83Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
D7FI32_ECTSI8.080e-5880.83T-complex protein 1 subunit epsilon n=2 Tax=Ectoca... [more]
A0A7S3K1X2_9STRA1.620e-5782.50T-complex protein 1 subunit epsilon n=2 Tax=Aureou... [more]
A0A6V7IK30_9HYME4.130e-5776.07Uncharacterized protein (Fragment) n=1 Tax=Bracon ... [more]
A0A7S1XSM7_9STRA9.730e-5782.20T-complex protein 1 subunit epsilon n=2 Tax=Phaeom... [more]
A0A0C3PT43_9AGAM1.010e-5674.17Uncharacterized protein (Fragment) n=1 Tax=Tulasne... [more]
A0A7S2XY11_9STRA3.760e-5676.03Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6U3ULQ3_9STRA3.770e-5680.00T-complex protein 1 subunit epsilon n=1 Tax=Ditylu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120824contigM-pyrifera_M_contig120824:153..515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.4
Seed ortholog evalue2e-48
Seed eggNOG ortholog2880.D7FI32
Preferred nameCCT5
KEGG koko:K09497
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005832,GO:0005886,GO:0005911,GO:0006457,GO:0006458,GO:0008150,GO:0009506,GO:0009987,GO:0016020,GO:0030054,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0055044,GO:0061077,GO:0071944,GO:0101031
EggNOG free text desc.unfolded protein binding
EggNOG OGsCOG0459@1,KOG0357@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110,ko04147
Exons1
Model size363
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815727.7089195-CDS-M-pyrifera_M_contig120824:152..5151622815727.7089195-CDS-M-pyrifera_M_contig120824:152..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120824 153..515 +
1692277541.2438736-CDS-M-pyrifera_M_contig120824:152..5151692277541.2438736-CDS-M-pyrifera_M_contig120824:152..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120824 153..515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120824.4285.1prot_M-pyrifera_M_contig120824.4285.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120824 153..515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120824.4285.1

>prot_M-pyrifera_M_contig120824.4285.1 ID=prot_M-pyrifera_M_contig120824.4285.1|Name=mRNA_M-pyrifera_M_contig120824.4285.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
ANILAARTVSSVLRTSLGPKGMDKMLVSPDGDVTITNDGATILAKMEVEH
KVAKLMVELSASQDDEIGDGTTGVVVLAGALLEQAEHLLDRGIHPIRVSE
GFEVACQAAVEHLESIAERIE
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mRNA from alignment at M-pyrifera_M_contig120824:153..515+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120824.4285.1 ID=mRNA_M-pyrifera_M_contig120824.4285.1|Name=mRNA_M-pyrifera_M_contig120824.4285.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig120824:153..515+ (Macrocystis pyrifera P11B4 male)
GCGAACATTCTTGCTGCGCGCACTGTTTCTTCTGTGCTTCGGACTTCTCT TGGTCCGAAGGGGATGGACAAGATGCTGGTTTCTCCGGACGGGGACGTGA CGATCACGAACGACGGCGCTACGATTCTGGCCAAGATGGAGGTGGAGCAC AAGGTGGCCAAGCTGATGGTGGAGCTGAGTGCGTCGCAGGACGACGAGAT TGGAGACGGGACCACGGGGGTGGTGGTGTTGGCGGGGGCCTTGCTGGAGC AGGCGGAGCATTTGCTCGACCGCGGCATCCACCCCATTCGAGTGTCGGAA GGGTTTGAGGTGGCCTGTCAAGCGGCGGTGGAACATTTGGAGTCGATTGC GGAGCGCATCGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120824:153..515+

>mRNA_M-pyrifera_M_contig120824.4285.1 ID=mRNA_M-pyrifera_M_contig120824.4285.1|Name=mRNA_M-pyrifera_M_contig120824.4285.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig120824:153..515+ (Macrocystis pyrifera P11B4 male)
GCGAACATTCTTGCTGCGCGCACTGTTTCTTCTGTGCTTCGGACTTCTCT
TGGTCCGAAGGGGATGGACAAGATGCTGGTTTCTCCGGACGGGGACGTGA
CGATCACGAACGACGGCGCTACGATTCTGGCCAAGATGGAGGTGGAGCAC
AAGGTGGCCAAGCTGATGGTGGAGCTGAGTGCGTCGCAGGACGACGAGAT
TGGAGACGGGACCACGGGGGTGGTGGTGTTGGCGGGGGCCTTGCTGGAGC
AGGCGGAGCATTTGCTCGACCGCGGCATCCACCCCATTCGAGTGTCGGAA
GGGTTTGAGGTGGCCTGTCAAGCGGCGGTGGAACATTTGGAGTCGATTGC
GGAGCGCATCGAAGCGAACATTCTTGCTGCGCGCACTGTTTCTTCTGTGC
TTCGGACTTCTCTTGGTCCGAAGGGGATGGACAAGATGCTGGTTTCTCCG
GACGGGGACGTGACGATCACGAACGACGGCGCTACGATTCTGGCCAAGAT
GGAGGTGGAGCACAAGGTGGCCAAGCTGATGGTGGAGCTGAGTGCGTCGC
AGGACGACGAGATTGGAGACGGGACCACGGGGGTGGTGGTGTTGGCGGGG
GCCTTGCTGGAGCAGGCGGAGCATTTGCTCGACCGCGGCATCCACCCCAT
TCGAGTGTCGGAAGGGTTTGAGGTGGCCTGTCAAGCGGCGGTGGAACATT
TGGAGTCGATTGCGGAGCGCATCGAA
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