prot_M-pyrifera_M_contig120759.4274.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig120759.4274.1
Unique Name	prot_M-pyrifera_M_contig120759.4274.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	103

Homology

[Close]

BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: A0A1S3GRL6_DIPOR (exosome complex component RRP46 n=2 Tax=Heteromyidae TaxID=10015 RepID=A0A1S3GRL6_DIPOR)

HSP 1 Score: 70.1 bits (170), Expect = 2.050e-12
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 0

Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 103
            G  GV ++ +E + R   E AVL AL+PR ++TVV+Q +S AG+LL+  LNA  +ALVDAGVP++AL C  T AL   G  T+D             TFA ++
Sbjct:   79 GLPGVAEKSRERMIRNTCEAAVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMKALFCGITCALDSDGTITLDPTDKQEKEARAVLTFALDS 181

[Close]

BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: A0A8I6AB24_RAT (Exosome component 5 n=1 Tax=Rattus norvegicus TaxID=10116 RepID=A0A8I6AB24_RAT)

HSP 1 Score: 69.7 bits (169), Expect = 2.480e-12
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 0

Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 103
            G  GV ++ +E + R   E  VL AL+PR ++TVV+Q +S  G+LL+  LNA  +ALVDAGVP+RAL C  T AL P G+  +D             TFA ++
Sbjct:   69 GLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACCLNAACMALVDAGVPMRALFCGVTCALDPDGNLVLDPTTKQEKEARAILTFALDS 171

[Close]

BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: UPI00186B159C (exosome complex component RRP46 isoform X2 n=1 Tax=Trichosurus vulpecula TaxID=9337 RepID=UPI00186B159C)

HSP 1 Score: 68.9 bits (167), Expect = 3.150e-12
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = 0

Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 103
            G  GV ++ +E + R   E  VL  L+PR ++T+V+Q +S AG+LL+  LNA  LALVDAGVP+RAL C  T AL P G   +D             TFA ++
Sbjct:   42 GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITIVLQIVSDAGSLLACCLNAACLALVDAGVPMRALFCGVTCALDPDGGLVLDPTAKQEKEARAILTFALDS 144

[Close]

BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: A0A8I6GHQ8_RAT (Exosome component 5 n=1 Tax=Rattus norvegicus TaxID=10116 RepID=A0A8I6GHQ8_RAT)

HSP 1 Score: 69.7 bits (169), Expect = 4.660e-12
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 0

Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 103
            G  GV ++ +E + R   E  VL AL+PR ++TVV+Q +S  G+LL+  LNA  +ALVDAGVP+RAL C  T AL P G+  +D             TFA ++
Sbjct:  120 GLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACCLNAACMALVDAGVPMRALFCGVTCALDPDGNLVLDPTTKQEKEARAILTFALDS 222

[Close]

BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: G3TBW9_LOXAF (Exosome component 5 n=2 Tax=Afrotheria TaxID=311790 RepID=G3TBW9_LOXAF)

HSP 1 Score: 68.9 bits (167), Expect = 6.060e-12
Identity = 45/103 (43.69%), Postives = 61/103 (59.22%), Query Frame = 0

Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 103
            G  GV ++ +E + R   E  VL AL+PR ++TVV+Q IS AG+LL+  LNA  +ALVDAGVP+RAL C  T AL   G+  +D             TFA ++
Sbjct:   85 GLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVISDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDADGNLVLDPTVKQEKEARAVLTFALDS 187

[Close]

BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: A0A6G1ALF1_CROCR (EXOS5 protein (Fragment) n=5 Tax=Laurasiatheria TaxID=314145 RepID=A0A6G1ALF1_CROCR)

HSP 1 Score: 68.2 bits (165), Expect = 7.820e-12
Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = 0

Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 103
            G  GV ++ +E + R   E  VL AL+PR ++TVV+Q IS AG+LL+  LNA  +ALVDAGVP+RAL C  T AL   G   +D             TFA ++
Sbjct:   85 GLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVISDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSEGTLVLDPTAKQEKEARAVLTFALDS 187

[Close]

BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: A0A8C6I3L2_MUSSI (Exosome component 5 n=1 Tax=Mus spicilegus TaxID=10103 RepID=A0A8C6I3L2_MUSSI)

HSP 1 Score: 68.6 bits (166), Expect = 8.020e-12
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 0

Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 103
            G  GV ++ +E + R   E  VL AL+PR ++TVV+Q +S AG+LL+  LNA  +ALVDAGVP+RAL C  T AL   G+  +D             TFA ++
Sbjct:   69 GLPGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGNLVLDPTTKQEKEARAILTFALDS 171

[Close]

BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: UPI001486FC9F (exosome complex component RRP46 isoform X5 n=1 Tax=Arvicanthis niloticus TaxID=61156 RepID=UPI001486FC9F)

HSP 1 Score: 68.2 bits (165), Expect = 8.070e-12
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 0

Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 103
            G  GV ++ +E + R   E  VL AL+PR ++TVV+Q +S AG+LL+  LNA  +ALVDAGVP+RAL C  T AL   G+  +D             TFA ++
Sbjct:   85 GLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGNLMLDPTTKQEKEARAVLTFALDS 187

[Close]

BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: EXOS5_MOUSE (Exosome complex component RRP46 n=30 Tax=Tetrapoda TaxID=32523 RepID=EXOS5_MOUSE)

HSP 1 Score: 68.6 bits (166), Expect = 8.460e-12
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 0

Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 103
            G  GV ++ +E + R   E  VL AL+PR ++TVV+Q +S AG+LL+  LNA  +ALVDAGVP+RAL C  T AL   G+  +D             TFA ++
Sbjct:   85 GLPGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGNLVLDPTTKQEKEARAILTFALDS 187

[Close]

BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: UPI00032B11EE (exosome complex component RRP46 n=2 Tax=Ochotona TaxID=9977 RepID=UPI00032B11EE)

HSP 1 Score: 68.6 bits (166), Expect = 8.460e-12
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 0

Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 103
            G  GV ++ +E++ R   E  VL AL+PR ++TVV+Q +S AG+LL+  LNA  +ALVDAGVP+RAL C  T AL   G   +D             TFA ++
Sbjct:   85 GLPGVAEKSREQLIRSTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLVLDPTVKQEKEARAVLTFALDS 187

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1S3GRL6_DIPOR	2.050e-12	43.69	exosome complex component RRP46 n=2 Tax=Heteromyid...	[more]
A0A8I6AB24_RAT	2.480e-12	42.72	Exosome component 5 n=1 Tax=Rattus norvegicus TaxI...	[more]
UPI00186B159C	3.150e-12	42.72	exosome complex component RRP46 isoform X2 n=1 Tax...	[more]
A0A8I6GHQ8_RAT	4.660e-12	42.72	Exosome component 5 n=1 Tax=Rattus norvegicus TaxI...	[more]
G3TBW9_LOXAF	6.060e-12	43.69	Exosome component 5 n=2 Tax=Afrotheria TaxID=31179...	[more]
A0A6G1ALF1_CROCR	7.820e-12	43.69	EXOS5 protein (Fragment) n=5 Tax=Laurasiatheria Ta...	[more]
A0A8C6I3L2_MUSSI	8.020e-12	42.72	Exosome component 5 n=1 Tax=Mus spicilegus TaxID=1...	[more]
UPI001486FC9F	8.070e-12	42.72	exosome complex component RRP46 isoform X5 n=1 Tax...	[more]
EXOS5_MOUSE	8.460e-12	42.72	Exosome complex component RRP46 n=30 Tax=Tetrapoda...	[more]
UPI00032B11EE	8.460e-12	42.72	exosome complex component RRP46 n=2 Tax=Ochotona T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 1..103 e-value: 1.9E-25 score: 91.7
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 6..63 e-value: 4.3E-7 score: 30.5
None	No IPR available	PANTHER	PTHR11953:SF1	EXOSOME COMPLEX COMPONENT RRP46	coord: 4..102
None	No IPR available	PANTHER	PTHR11953	EXOSOME COMPLEX COMPONENT	coord: 4..102
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 15..75
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 63..101

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig120759	contig	M-pyrifera_M_contig120759:113..421 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig120759.4274.1	mRNA_M-pyrifera_M_contig120759.4274.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig120759 113..421 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig120759.4274.1 ID=prot_M-pyrifera_M_contig120759.4274.1|Name=mRNA_M-pyrifera_M_contig120759.4274.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTAL
NAVSLALVDAGVPLRALVCACTVALSPTGDATVDADAEEERQARATFTFA
YNA

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR027408	PNPase/RNase_PH_dom_sf
IPR001247	ExoRNase_PH_dom1
IPR020568	Ribosomal_S5_D2-typ_fold
IPR036345	ExoRNase_PH_dom2_sf