mRNA_M-pyrifera_M_contig120759.4274.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120759.4274.1
Unique NamemRNA_M-pyrifera_M_contig120759.4274.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: A0A1S3GRL6_DIPOR (exosome complex component RRP46 n=2 Tax=Heteromyidae TaxID=10015 RepID=A0A1S3GRL6_DIPOR)

HSP 1 Score: 70.1 bits (170), Expect = 2.050e-12
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 309
            G  GV ++ +E + R   E AVL AL+PR ++TVV+Q +S AG+LL+  LNA  +ALVDAGVP++AL C  T AL   G  T+D             TFA ++
Sbjct:   79 GLPGVAEKSRERMIRNTCEAAVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMKALFCGITCALDSDGTITLDPTDKQEKEARAVLTFALDS 181
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BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: A0A8I6AB24_RAT (Exosome component 5 n=1 Tax=Rattus norvegicus TaxID=10116 RepID=A0A8I6AB24_RAT)

HSP 1 Score: 69.7 bits (169), Expect = 2.480e-12
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 1 
Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 309
            G  GV ++ +E + R   E  VL AL+PR ++TVV+Q +S  G+LL+  LNA  +ALVDAGVP+RAL C  T AL P G+  +D             TFA ++
Sbjct:   69 GLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACCLNAACMALVDAGVPMRALFCGVTCALDPDGNLVLDPTTKQEKEARAILTFALDS 171
[Close]
BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: UPI00186B159C (exosome complex component RRP46 isoform X2 n=1 Tax=Trichosurus vulpecula TaxID=9337 RepID=UPI00186B159C)

HSP 1 Score: 68.9 bits (167), Expect = 3.150e-12
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 309
            G  GV ++ +E + R   E  VL  L+PR ++T+V+Q +S AG+LL+  LNA  LALVDAGVP+RAL C  T AL P G   +D             TFA ++
Sbjct:   42 GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITIVLQIVSDAGSLLACCLNAACLALVDAGVPMRALFCGVTCALDPDGGLVLDPTAKQEKEARAILTFALDS 144
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BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: A0A8I6GHQ8_RAT (Exosome component 5 n=1 Tax=Rattus norvegicus TaxID=10116 RepID=A0A8I6GHQ8_RAT)

HSP 1 Score: 69.7 bits (169), Expect = 4.660e-12
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 1 
Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 309
            G  GV ++ +E + R   E  VL AL+PR ++TVV+Q +S  G+LL+  LNA  +ALVDAGVP+RAL C  T AL P G+  +D             TFA ++
Sbjct:  120 GLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACCLNAACMALVDAGVPMRALFCGVTCALDPDGNLVLDPTTKQEKEARAILTFALDS 222
[Close]
BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: G3TBW9_LOXAF (Exosome component 5 n=2 Tax=Afrotheria TaxID=311790 RepID=G3TBW9_LOXAF)

HSP 1 Score: 68.9 bits (167), Expect = 6.060e-12
Identity = 45/103 (43.69%), Postives = 61/103 (59.22%), Query Frame = 1 
Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 309
            G  GV ++ +E + R   E  VL AL+PR ++TVV+Q IS AG+LL+  LNA  +ALVDAGVP+RAL C  T AL   G+  +D             TFA ++
Sbjct:   85 GLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVISDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDADGNLVLDPTVKQEKEARAVLTFALDS 187
[Close]
BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: A0A6G1ALF1_CROCR (EXOS5 protein (Fragment) n=5 Tax=Laurasiatheria TaxID=314145 RepID=A0A6G1ALF1_CROCR)

HSP 1 Score: 68.2 bits (165), Expect = 7.820e-12
Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 309
            G  GV ++ +E + R   E  VL AL+PR ++TVV+Q IS AG+LL+  LNA  +ALVDAGVP+RAL C  T AL   G   +D             TFA ++
Sbjct:   85 GLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVISDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSEGTLVLDPTAKQEKEARAVLTFALDS 187
[Close]
BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: A0A8C6I3L2_MUSSI (Exosome component 5 n=1 Tax=Mus spicilegus TaxID=10103 RepID=A0A8C6I3L2_MUSSI)

HSP 1 Score: 68.6 bits (166), Expect = 8.020e-12
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 1 
Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 309
            G  GV ++ +E + R   E  VL AL+PR ++TVV+Q +S AG+LL+  LNA  +ALVDAGVP+RAL C  T AL   G+  +D             TFA ++
Sbjct:   69 GLPGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGNLVLDPTTKQEKEARAILTFALDS 171
[Close]
BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: UPI001486FC9F (exosome complex component RRP46 isoform X5 n=1 Tax=Arvicanthis niloticus TaxID=61156 RepID=UPI001486FC9F)

HSP 1 Score: 68.2 bits (165), Expect = 8.070e-12
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 1 
Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 309
            G  GV ++ +E + R   E  VL AL+PR ++TVV+Q +S AG+LL+  LNA  +ALVDAGVP+RAL C  T AL   G+  +D             TFA ++
Sbjct:   85 GLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGNLMLDPTTKQEKEARAVLTFALDS 187
[Close]
BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: EXOS5_MOUSE (Exosome complex component RRP46 n=30 Tax=Tetrapoda TaxID=32523 RepID=EXOS5_MOUSE)

HSP 1 Score: 68.6 bits (166), Expect = 8.460e-12
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 1 
Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 309
            G  GV ++ +E + R   E  VL AL+PR ++TVV+Q +S AG+LL+  LNA  +ALVDAGVP+RAL C  T AL   G+  +D             TFA ++
Sbjct:   85 GLPGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGNLVLDPTTKQEKEARAILTFALDS 187
[Close]
BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Match: UPI00032B11EE (exosome complex component RRP46 n=2 Tax=Ochotona TaxID=9977 RepID=UPI00032B11EE)

HSP 1 Score: 68.6 bits (166), Expect = 8.460e-12
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 1 
Query:    1 GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTALNAVSLALVDAGVPLRALVCACTVALSPTGDATVDAXXXXXXXXXXTFTFAYNA 309
            G  GV ++ +E++ R   E  VL AL+PR ++TVV+Q +S AG+LL+  LNA  +ALVDAGVP+RAL C  T AL   G   +D             TFA ++
Sbjct:   85 GLPGVAEKSREQLIRSTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLVLDPTVKQEKEARAVLTFALDS 187
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120759.4274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1S3GRL6_DIPOR2.050e-1243.69exosome complex component RRP46 n=2 Tax=Heteromyid... [more]
A0A8I6AB24_RAT2.480e-1242.72Exosome component 5 n=1 Tax=Rattus norvegicus TaxI... [more]
UPI00186B159C3.150e-1242.72exosome complex component RRP46 isoform X2 n=1 Tax... [more]
A0A8I6GHQ8_RAT4.660e-1242.72Exosome component 5 n=1 Tax=Rattus norvegicus TaxI... [more]
G3TBW9_LOXAF6.060e-1243.69Exosome component 5 n=2 Tax=Afrotheria TaxID=31179... [more]
A0A6G1ALF1_CROCR7.820e-1243.69EXOS5 protein (Fragment) n=5 Tax=Laurasiatheria Ta... [more]
A0A8C6I3L2_MUSSI8.020e-1242.72Exosome component 5 n=1 Tax=Mus spicilegus TaxID=1... [more]
UPI001486FC9F8.070e-1242.72exosome complex component RRP46 isoform X5 n=1 Tax... [more]
EXOS5_MOUSE8.460e-1242.72Exosome complex component RRP46 n=30 Tax=Tetrapoda... [more]
UPI00032B11EE8.460e-1242.72exosome complex component RRP46 n=2 Tax=Ochotona T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120759contigM-pyrifera_M_contig120759:113..421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score71.2
Seed ortholog evalue3.1e-10
Seed eggNOG ortholog10116.ENSRNOP00000028026
Preferred nameEXOSC5
KEGG koko:K12590
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000288,GO:0000291,GO:0000785,GO:0000956,GO:0002252,GO:0002376,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009892,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0022613,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031329,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0042254,GO:0043144,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043487,GO:0043488,GO:0043628,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045006,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051607,GO:0051704,GO:0051707,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0071025,GO:0071027,GO:0071028,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0098542,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1902494,GO:1903311,GO:1905354
EggNOG free text desc.Exosome complex component RRP46
EggNOG OGs35HQG@314146,39RKN@33154,3BCNF@33208,3CYWA@33213,3J960@40674,4831K@7711,4954S@7742,4PUDA@9989,COG0689@1,KOG1069@2759
COG Functional cat.J
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815727.1533477-CDS-M-pyrifera_M_contig120759:112..4211622815727.1533477-CDS-M-pyrifera_M_contig120759:112..421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120759 113..421 -
1692277540.926937-CDS-M-pyrifera_M_contig120759:112..4211692277540.926937-CDS-M-pyrifera_M_contig120759:112..421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120759 113..421 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120759.4274.1prot_M-pyrifera_M_contig120759.4274.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120759 113..421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120759.4274.1

>prot_M-pyrifera_M_contig120759.4274.1 ID=prot_M-pyrifera_M_contig120759.4274.1|Name=mRNA_M-pyrifera_M_contig120759.4274.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
GRAGVEQRRQEEVARGAFEQAVLRALYPRAAVTVVVQEISAAGALLSTAL
NAVSLALVDAGVPLRALVCACTVALSPTGDATVDADAEEERQARATFTFA
YNA
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mRNA from alignment at M-pyrifera_M_contig120759:113..421-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120759.4274.1 ID=mRNA_M-pyrifera_M_contig120759.4274.1|Name=mRNA_M-pyrifera_M_contig120759.4274.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig120759:113..421- (Macrocystis pyrifera P11B4 male)
GGGCGAGCGGGGGTGGAGCAGCGGCGGCAGGAGGAGGTGGCGCGCGGGGC
CTTCGAGCAGGCGGTGCTGCGTGCGCTGTACCCGCGCGCGGCGGTGACGG
TGGTGGTGCAGGAGATCTCCGCCGCCGGCGCTCTCCTCTCCACCGCACTC
AACGCTGTGTCGCTGGCCCTCGTGGACGCGGGAGTGCCGCTCCGCGCCCT
CGTCTGCGCCTGCACTGTCGCTCTCTCACCCACAGGCGACGCCACTGTCG
ACGCCGACGCAGAGGAAGAGCGCCAGGCGCGCGCAACCTTCACTTTCGCT
TACAACGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120759:113..421-

>mRNA_M-pyrifera_M_contig120759.4274.1 ID=mRNA_M-pyrifera_M_contig120759.4274.1|Name=mRNA_M-pyrifera_M_contig120759.4274.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig120759:113..421- (Macrocystis pyrifera P11B4 male)
GGGCGAGCGGGGGTGGAGCAGCGGCGGCAGGAGGAGGTGGCGCGCGGGGC
CTTCGAGCAGGCGGTGCTGCGTGCGCTGTACCCGCGCGCGGCGGTGACGG
TGGTGGTGCAGGAGATCTCCGCCGCCGGCGCTCTCCTCTCCACCGCACTC
AACGCTGTGTCGCTGGCCCTCGTGGACGCGGGAGTGCCGCTCCGCGCCCT
CGTCTGCGCCTGCACTGTCGCTCTCTCACCCACAGGCGACGCCACTGTCG
ACGCCGACGCAGAGGAAGAGCGCCAGGCGCGCGCAACCTTCACTTTCGCT
TACAACGCCGGGCGAGCGGGGGTGGAGCAGCGGCGGCAGGAGGAGGTGGC
GCGCGGGGCCTTCGAGCAGGCGGTGCTGCGTGCGCTGTACCCGCGCGCGG
CGGTGACGGTGGTGGTGCAGGAGATCTCCGCCGCCGGCGCTCTCCTCTCC
ACCGCACTCAACGCTGTGTCGCTGGCCCTCGTGGACGCGGGAGTGCCGCT
CCGCGCCCTCGTCTGCGCCTGCACTGTCGCTCTCTCACCCACAGGCGACG
CCACTGTCGACGCCGACGCAGAGGAAGAGCGCCAGGCGCGCGCAACCTTC
ACTTTCGCTTACAACGCC
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