mRNA_M-pyrifera_M_contig120216.4171.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120216.4171.1
Unique NamemRNA_M-pyrifera_M_contig120216.4171.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120216.4171.1 vs. uniprot
Match: W1PK22_AMBTC (Uncharacterized protein n=3 Tax=Amborella trichopoda TaxID=13333 RepID=W1PK22_AMBTC)

HSP 1 Score: 81.6 bits (200), Expect = 2.260e-15
Identity = 49/129 (37.98%), Postives = 69/129 (53.49%), Query Frame = 1
Query:   13 HVVRLIPSRIYSAAFHPSSGPVVAWVGGKHGHLGAWRPALAESDPEGACSVFQPHNAPLSGIVIPPSQPTRIFTTSYDMCLRMMDAEKGTSSEIAIWDARIHYLTVQE-GGNVIYFCTTAGEFVRTDIR 396
            +V RL+P RI+S AF P     V   GGK GH+G W     E D       + PH+AP+SG+V+ P   T+IFT+SYD  +R+M+ E+G    +   +  I  L+ +    N +YF    GEF   D R
Sbjct:  230 NVARLVPGRIFSLAFFPFCERSVVVAGGKFGHVGIWDTDQKEED---GVHSYCPHSAPVSGVVVWPFHLTKIFTSSYDGFIRLMNVEEGKFDMVYNCNDEIFALSARTCDSNSLYFAEGQGEFKVWDER 355          
BLAST of mRNA_M-pyrifera_M_contig120216.4171.1 vs. uniprot
Match: A0A5P1FPK5_ASPOF (Uncharacterized protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FPK5_ASPOF)

HSP 1 Score: 74.7 bits (182), Expect = 5.350e-13
Identity = 46/120 (38.33%), Postives = 64/120 (53.33%), Query Frame = 1
Query:   22 RLIPSRIYSAAFHPSSGPVVAWVGGKHGHLGAWRPALAESDPEGACSVFQPHNAPLSGIVIPPSQPTRIFTTSYDMCLRMMDAEKG-----TSSEIAI-----WDARIHYLTVQEGGNVI 351
            +++  RI S  F P     V  VG K G+LG W     E D  G   V+ PH+ P+SGI + P  P +IFT+SYD  +R+MD EKG     TSS+ A      W   ++ L + EGG ++
Sbjct:   31 KVVSERIMSVRFLPFVDRTVVVVGNKIGNLGFWDLDFGEGD-GGGIYVYHPHSGPVSGISVHPFSPRKIFTSSYDGFVRLMDVEKGSFNMLTSSDDAFFSICQWPEDVNSLYIGEGGGML 149          
BLAST of mRNA_M-pyrifera_M_contig120216.4171.1 vs. uniprot
Match: UPI0009012F95 (WD repeat-containing protein 76 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI0009012F95)

HSP 1 Score: 74.3 bits (181), Expect = 8.620e-13
Identity = 42/129 (32.56%), Postives = 71/129 (55.04%), Query Frame = 1
Query:   13 HVVRLIPSRIYSAAFHPSSGPVVAWVGGKHGHLGAWRPALAESDPEGACSVFQPHNAPLSGIVIPPSQPTRIFTTSYDMCLRMMDAEKGTSSEIAIWDARIHYLTVQ-EGGNVIYFCTTAGEFVRTDIR 396
            ++ R++P RI +  F P++G  +  VG K G++G W     E D +G   ++QPH+AP+SGIVI      +++T  YD  +R+MD EK     +   D  I+ L+ + +  N +Y+    G+    D+R
Sbjct:  183 NIARVVPGRILNVKFFPTTGMRMVAVGNKFGNIGFWNADAKEEDGDGIY-LYQPHSAPVSGIVIESFSMPKMYTCCYDGFIRLMDIEKELFDSLYFSDHSIYALSQRPDDMNSLYYAEGNGKLGIWDLR 310          
BLAST of mRNA_M-pyrifera_M_contig120216.4171.1 vs. uniprot
Match: UPI000867404F (WD40 repeat-like protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=UPI000867404F)

HSP 1 Score: 72.8 bits (177), Expect = 3.030e-12
Identity = 47/145 (32.41%), Postives = 65/145 (44.83%), Query Frame = 1
Query:   19 VRLIPSRIYSAAFHPSSGPVVAWVGGKHGHLGAW----RPALAESDPEGACSV-----FQPHNAPLSGIVIPPSQPTRIFTTSYDMCLRMMDAEKGTSSEIAIWDAR--------IHYLTVQEGGNVIYFCTTAGEFVRTDIREP 402
            +R+ P RIY    HP S   +   G K G LG W    +   AE D E A  +     F+PHN  +S     P+   +++TTSYD  +R++D + G S+EI              I    +   GNV+Y    AG   R D R P
Sbjct:  179 IRITPERIYHIGMHPDSTRKLVLAGDKTGVLGIWDADSKREAAEEDEEDAAELPLIHQFRPHNRTISSFAFSPTNAQKLYTTSYDASVRLLDLQAGISNEIFAPGKDEDEDEAPLISACEITPEGNVVYISDFAGRVHRYDTRAP 323          
BLAST of mRNA_M-pyrifera_M_contig120216.4171.1 vs. uniprot
Match: A0A0E9NEF7_SAICN (Acyl-CoA oxidase n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NEF7_SAICN)

HSP 1 Score: 72.8 bits (177), Expect = 3.420e-12
Identity = 47/145 (32.41%), Postives = 65/145 (44.83%), Query Frame = 1
Query:   19 VRLIPSRIYSAAFHPSSGPVVAWVGGKHGHLGAW----RPALAESDPEGACSV-----FQPHNAPLSGIVIPPSQPTRIFTTSYDMCLRMMDAEKGTSSEIAIWDAR--------IHYLTVQEGGNVIYFCTTAGEFVRTDIREP 402
            +R+ P RIY    HP S   +   G K G LG W    +   AE D E A  +     F+PHN  +S     P+   +++TTSYD  +R++D + G S+EI              I    +   GNV+Y    AG   R D R P
Sbjct:  179 IRITPERIYHIGMHPDSTRKLVLAGDKTGVLGIWDADSKREAAEEDEEDAAELPLIHQFRPHNRTISSFAFSPTNAQKLYTTSYDASVRLLDLQAGISNEIFAPGKDEDEDEAPLISACEITPEGNVVYISDFAGRVHRYDTRAP 323          
BLAST of mRNA_M-pyrifera_M_contig120216.4171.1 vs. uniprot
Match: A0A7S1J3R6_9EUGL (Guanine nucleotide-binding protein subunit beta-like protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J3R6_9EUGL)

HSP 1 Score: 72.4 bits (176), Expect = 4.200e-12
Identity = 43/134 (32.09%), Postives = 71/134 (52.99%), Query Frame = 1
Query:   16 VVRLIPSRIYSAAFHPSSGPVVAWVGGKHGHLGAWR-PALAESDPEGACSVFQPHNAPLSGIVIPPSQPTRIFTTSYDMCLRMMDAEKGTSSEIAIWDARIH----YLTVQEGG-NVIYFCTTAGEFVRTDIRE 399
            V +++P RIYS AFHPS+  ++   G K G+LG W   A AE DP     +++PH + +  +   P   +++ T SYD  +R MD  KG  + + + +   H    +  + EG  N +Y  T+ G+ +  D R+
Sbjct:  253 VAKVVPERIYSCAFHPSTSKLLVAAGDKQGNLGLWNVDAAAEVDP---VFLYKPHGSVIGALQYKPDDSSKLVTWSYDGTVRCMDVVKGEFARMFVVNEDEHGWVQHGCLSEGDPNAMYVATSQGKVMAVDWRQ 383          
BLAST of mRNA_M-pyrifera_M_contig120216.4171.1 vs. uniprot
Match: UPI0009BE7A90 (WD repeat-containing protein 76 isoform X2 n=3 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0009BE7A90)

HSP 1 Score: 70.5 bits (171), Expect = 1.910e-11
Identity = 46/129 (35.66%), Postives = 63/129 (48.84%), Query Frame = 1
Query:   13 HVVRLIPSRIYSAAFHPSSGPVVAWVGGKHGHLGAWRPALAESDPEGACSVFQPHNAPLSGIVIPPSQPTRIFTTSYDMCLRMMDAEKGTSSEIAIWDARIHYLTVQEGG-NVIYFCTTAGEFVRTDIR 396
            +V RL+P RI S  F P     V   G K G++G W     E D       + PH+A +SG+V+ P   T+IFT+SYD  +R+M+ E G    I   D  +  L+ Q    N +YF    GE    D R
Sbjct:  200 NVARLVPGRILSLGFFPCLERTVVVAGDKLGYVGFWDTDDKEGD---GVYTYCPHSAAVSGVVVRPFHLTKIFTSSYDGSIRLMNVEDGNFDMIYHCDDEVFALSTQTCDMNSLYFAEGQGELKVWDER 325          
BLAST of mRNA_M-pyrifera_M_contig120216.4171.1 vs. uniprot
Match: W1PSU1_AMBTC (Uncharacterized protein n=4 Tax=Amborella trichopoda TaxID=13333 RepID=W1PSU1_AMBTC)

HSP 1 Score: 70.5 bits (171), Expect = 1.910e-11
Identity = 46/129 (35.66%), Postives = 63/129 (48.84%), Query Frame = 1
Query:   13 HVVRLIPSRIYSAAFHPSSGPVVAWVGGKHGHLGAWRPALAESDPEGACSVFQPHNAPLSGIVIPPSQPTRIFTTSYDMCLRMMDAEKGTSSEIAIWDARIHYLTVQEGG-NVIYFCTTAGEFVRTDIR 396
            +V RL+P RI S  F P     V   G K G++G W     E D       + PH+A +SG+V+ P   T+IFT+SYD  +R+M+ E G    I   D  +  L+ Q    N +YF    GE    D R
Sbjct:  200 NVARLVPGRILSLGFFPCLERTVVVAGDKLGYVGFWDTDDKEGD---GVYTYCPHSAAVSGVVVRPFHLTKIFTSSYDGSIRLMNVEDGNFDMIYHCDDEVFALSTQTCDMNSLYFAEGQGELKVWDER 325          
BLAST of mRNA_M-pyrifera_M_contig120216.4171.1 vs. uniprot
Match: A0A0B6Z6H8_9EUPU (WD repeat-containing protein 76 (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6Z6H8_9EUPU)

HSP 1 Score: 68.2 bits (165), Expect = 2.180e-11
Identity = 30/91 (32.97%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    4 SDAHVVRLIPSRIYSAAFHPSSGPVVAWVGGKHGHLGAWRPALAESDPEGACSVFQPHNAPLSGIVIPPSQPTRIFTTSYDMCLRMMDAEK 276
            +D  V +++P R +S A+HPSS  +++  G K+G++G W    +ES  +     F+ H  P+S + +PP+ P ++++ SYD  LR  + E+
Sbjct:   99 TDNRVAKVVPGRAFSLAWHPSSQSLISVAGDKNGYIGIWDVTASESTGQDIVRAFRCHIKPVSDLFVPPADPHKLYSCSYDSTLRCGNFER 189          
BLAST of mRNA_M-pyrifera_M_contig120216.4171.1 vs. uniprot
Match: I1MTX8_SOYBN (Uncharacterized protein n=7 Tax=Glycine subgen. Soja TaxID=1462606 RepID=I1MTX8_SOYBN)

HSP 1 Score: 69.7 bits (169), Expect = 3.480e-11
Identity = 45/135 (33.33%), Postives = 69/135 (51.11%), Query Frame = 1
Query:   13 HVVRLIPSRIYSAAFHPSSGPVVAWVGGKHGHLGAWRPALAESDPEGACSVFQPHNAPLSGIVIPPSQPTRIFTTSYDMCLRMMDAEKGTSSEIAIWDARIHYLTVQEGG-NVIYFCTTAGEFVRTDIREPLRST 414
            ++ R++P RI S  F PSS   +  VG K G++G W    +E        +++PH AP+SGI+I P   ++I+T+ YD  LR+MD EK     +   D  I+ L++     N +Y     G     D R   RS+
Sbjct:  157 NIARVVPGRITSLRFFPSSSVKMVAVGNKFGNVGFWNVGGSE------VHLYRPHRAPISGILIQPHCFSKIYTSCYDGILRLMDVEKEIFDLVFECDESIYALSLPTNETNCLYLAEGYGGLTIWDNRIGKRSS 285          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120216.4171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W1PK22_AMBTC2.260e-1537.98Uncharacterized protein n=3 Tax=Amborella trichopo... [more]
A0A5P1FPK5_ASPOF5.350e-1338.33Uncharacterized protein n=2 Tax=Asparagus officina... [more]
UPI0009012F958.620e-1332.56WD repeat-containing protein 76 n=2 Tax=Ipomoea Ta... [more]
UPI000867404F3.030e-1232.41WD40 repeat-like protein n=1 Tax=Saitoella complic... [more]
A0A0E9NEF7_SAICN3.420e-1232.41Acyl-CoA oxidase n=1 Tax=Saitoella complicata (str... [more]
A0A7S1J3R6_9EUGL4.200e-1232.09Guanine nucleotide-binding protein subunit beta-li... [more]
UPI0009BE7A901.910e-1135.66WD repeat-containing protein 76 isoform X2 n=3 Tax... [more]
W1PSU1_AMBTC1.910e-1135.66Uncharacterized protein n=4 Tax=Amborella trichopo... [more]
A0A0B6Z6H8_9EUPU2.180e-1132.97WD repeat-containing protein 76 (Fragment) n=1 Tax... [more]
I1MTX8_SOYBN3.480e-1133.33Uncharacterized protein n=7 Tax=Glycine subgen. So... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120216contigM-pyrifera_M_contig120216:62..484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score87.4
Seed ortholog evalue5.7e-15
Seed eggNOG ortholog69781.S7ZRE9
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0008150,GO:0031974,GO:0031981,GO:0034399,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0070013,GO:0080134,GO:0080135,GO:0097159,GO:1901363,GO:1901976,GO:2000001,GO:2001020
EggNOG free text desc.DNA-binding protein that binds to both single- and double-stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes
EggNOG OGs20BQ6@147545,38E0S@33154,3NVA8@4751,3QMSB@4890,3S2WX@5042,KOG4328@1,KOG4328@2759
COG Functional cat.S
Best tax levelEurotiales
Best eggNOG OGNA|NA|NA
Exons1
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.760664-CDS-M-pyrifera_M_contig120216:61..4841622815721.760664-CDS-M-pyrifera_M_contig120216:61..484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120216 62..484 -
1692277538.0684462-CDS-M-pyrifera_M_contig120216:61..4841692277538.0684462-CDS-M-pyrifera_M_contig120216:61..484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120216 62..484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120216.4171.1prot_M-pyrifera_M_contig120216.4171.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120216 62..484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120216.4171.1

>prot_M-pyrifera_M_contig120216.4171.1 ID=prot_M-pyrifera_M_contig120216.4171.1|Name=mRNA_M-pyrifera_M_contig120216.4171.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
ASDAHVVRLIPSRIYSAAFHPSSGPVVAWVGGKHGHLGAWRPALAESDPE
GACSVFQPHNAPLSGIVIPPSQPTRIFTTSYDMCLRMMDAEKGTSSEIAI
WDARIHYLTVQEGGNVIYFCTTAGEFVRTDIREPLRSTKKP
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mRNA from alignment at M-pyrifera_M_contig120216:62..484-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120216.4171.1 ID=mRNA_M-pyrifera_M_contig120216.4171.1|Name=mRNA_M-pyrifera_M_contig120216.4171.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig120216:62..484- (Macrocystis pyrifera P11B4 male)
GCGAGCGACGCTCATGTGGTGCGATTGATCCCTTCTCGCATCTATTCCGC CGCGTTCCATCCCAGCTCTGGCCCTGTGGTCGCGTGGGTCGGTGGGAAAC ACGGCCATCTAGGGGCATGGCGCCCTGCCTTGGCGGAAAGTGACCCGGAA GGGGCTTGTAGCGTGTTTCAACCCCACAATGCGCCTCTTTCAGGCATCGT CATTCCTCCCTCCCAACCCACTCGCATCTTCACCACCTCGTACGACATGT GCCTCCGCATGATGGACGCAGAAAAAGGCACTTCTTCCGAAATCGCCATC TGGGACGCACGCATCCACTACCTCACCGTGCAAGAAGGAGGAAACGTCAT CTACTTCTGCACAACAGCTGGAGAATTCGTCAGAACAGATATCAGAGAAC CTCTTCGATCCACCAAAAAGCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120216:62..484-

>mRNA_M-pyrifera_M_contig120216.4171.1 ID=mRNA_M-pyrifera_M_contig120216.4171.1|Name=mRNA_M-pyrifera_M_contig120216.4171.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig120216:62..484- (Macrocystis pyrifera P11B4 male)
GCGAGCGACGCTCATGTGGTGCGATTGATCCCTTCTCGCATCTATTCCGC
CGCGTTCCATCCCAGCTCTGGCCCTGTGGTCGCGTGGGTCGGTGGGAAAC
ACGGCCATCTAGGGGCATGGCGCCCTGCCTTGGCGGAAAGTGACCCGGAA
GGGGCTTGTAGCGTGTTTCAACCCCACAATGCGCCTCTTTCAGGCATCGT
CATTCCTCCCTCCCAACCCACTCGCATCTTCACCACCTCGTACGACATGT
GCCTCCGCATGATGGACGCAGAAAAAGGCACTTCTTCCGAAATCGCCATC
TGGGACGCACGCATCCACTACCTCACCGTGCAAGAAGGAGGAAACGTCAT
CTACTTCTGCACAACAGCTGGAGAATTCGTCAGAACAGATATCAGAGAAC
CTCTTCGATCCACCAAAAAGCCAGCGAGCGACGCTCATGTGGTGCGATTG
ATCCCTTCTCGCATCTATTCCGCCGCGTTCCATCCCAGCTCTGGCCCTGT
GGTCGCGTGGGTCGGTGGGAAACACGGCCATCTAGGGGCATGGCGCCCTG
CCTTGGCGGAAAGTGACCCGGAAGGGGCTTGTAGCGTGTTTCAACCCCAC
AATGCGCCTCTTTCAGGCATCGTCATTCCTCCCTCCCAACCCACTCGCAT
CTTCACCACCTCGTACGACATGTGCCTCCGCATGATGGACGCAGAAAAAG
GCACTTCTTCCGAAATCGCCATCTGGGACGCACGCATCCACTACCTCACC
GTGCAAGAAGGAGGAAACGTCATCTACTTCTGCACAACAGCTGGAGAATT
CGTCAGAACAGATATCAGAGAACCTCTTCGATCCACCAAAAAGCCA
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