mRNA_M-pyrifera_M_contig120064.4143.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120064.4143.1
Unique NamemRNA_M-pyrifera_M_contig120064.4143.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120064.4143.1 vs. uniprot
Match: A0A518IT16_9BACT (DNA primase TraC n=1 Tax=Rosistilla oblonga TaxID=2527990 RepID=A0A518IT16_9BACT)

HSP 1 Score: 131 bits (329), Expect = 5.500e-36
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 1
Query:    1 VAEIGSCFLMGELQMPTTENLENHAAYLKSWLKGMNDDPKFIFRAAAQSSKATDYILSFSRKDET 195
            VAEIG+CFLMGELQMPT ENLENHAAYLKSWLKGMNDDPKFIFRAAAQSSKATDYILSFSRKDET
Sbjct:  228 VAEIGACFLMGELQMPTMENLENHAAYLKSWLKGMNDDPKFIFRAAAQSSKATDYILSFSRKDET 292          
BLAST of mRNA_M-pyrifera_M_contig120064.4143.1 vs. uniprot
Match: A0A2G1W715_9BACT (Uncharacterized protein n=1 Tax=Rhodopirellula bahusiensis TaxID=2014065 RepID=A0A2G1W715_9BACT)

HSP 1 Score: 130 bits (326), Expect = 1.540e-35
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 1
Query:    1 VAEIGSCFLMGELQMPTTENLENHAAYLKSWLKGMNDDPKFIFRAAAQSSKATDYILSFSRKDET 195
            VAEIG+CFLMGEL MPTTENLENHAAYLKSWLKGMNDDPKFIFRAAAQSSKATDYILSFSR+DET
Sbjct:  228 VAEIGACFLMGELNMPTTENLENHAAYLKSWLKGMNDDPKFIFRAAAQSSKATDYILSFSRQDET 292          
BLAST of mRNA_M-pyrifera_M_contig120064.4143.1 vs. uniprot
Match: UPI00118B282D (zincin-like metallopeptidase domain-containing protein n=1 Tax=Symmachiella dynata TaxID=2527995 RepID=UPI00118B282D)

HSP 1 Score: 106 bits (265), Expect = 1.690e-26
Identity = 46/64 (71.88%), Postives = 58/64 (90.62%), Query Frame = 1
Query:    1 VAEIGSCFLMGELQMPTTENLENHAAYLKSWLKGMNDDPKFIFRAAAQSSKATDYILSFSRKDE 192
            +AEIGSCF+MGEL +PT +N++NHAAY+KSWLKGM+DDPKFIFRAAAQ++KA D++L FSR  E
Sbjct:  227 IAEIGSCFMMGELGLPTADNMDNHAAYVKSWLKGMSDDPKFIFRAAAQATKAVDFLLDFSRNAE 290          
BLAST of mRNA_M-pyrifera_M_contig120064.4143.1 vs. uniprot
Match: UPI001E601EE2 (zincin-like metallopeptidase domain-containing protein n=1 Tax=Roseiconus lacunae TaxID=2605694 RepID=UPI001E601EE2)

HSP 1 Score: 106 bits (264), Expect = 2.640e-26
Identity = 51/64 (79.69%), Postives = 55/64 (85.94%), Query Frame = 1
Query:    1 VAEIGSCFLMGELQMPTTENLENHAAYLKSWLKGMNDDPKFIFRAAAQSSKATDYILSFSRKDE 192
            VAEIGSCFLM EL M TTENL+NHAAY+KSWL  M DDPKFIFRA+AQ+SKA DYILSFSR  E
Sbjct:  228 VAEIGSCFLMNELGMATTENLDNHAAYVKSWLNAMADDPKFIFRASAQASKAADYILSFSRNTE 291          
BLAST of mRNA_M-pyrifera_M_contig120064.4143.1 vs. uniprot
Match: A0A518CMM9_9PLAN (DNA primase TraC n=1 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CMM9_9PLAN)

HSP 1 Score: 90.9 bits (224), Expect = 1.520e-20
Identity = 39/62 (62.90%), Postives = 51/62 (82.26%), Query Frame = 1
Query:    1 VAEIGSCFLMGELQMPTTENLENHAAYLKSWLKGMNDDPKFIFRAAAQSSKATDYILSFSRK 186
            +AE+G+CFLMGEL++P  EN+ NHAAYL  WLK M  DPKFIF A++Q+SKA DY+LS+S +
Sbjct:  225 IAELGACFLMGELEIPFAENISNHAAYLDGWLKKMKGDPKFIFDASSQASKAVDYLLSYSEQ 286          
BLAST of mRNA_M-pyrifera_M_contig120064.4143.1 vs. uniprot
Match: UPI0014205A8C (zincin-like metallopeptidase domain-containing protein n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI0014205A8C)

HSP 1 Score: 88.6 bits (218), Expect = 1.360e-19
Identity = 40/64 (62.50%), Postives = 53/64 (82.81%), Query Frame = 1
Query:    1 VAEIGSCFLMGELQMPTTENLENHAAYLKSWLKGMNDDPKFIFRAAAQSSKATDYILSFSRKDE 192
            VAE+GSCFLMGEL +PTT+NL++HAAY+ +WLK M  D +FIF+AAA +SKA D++LS  R+ E
Sbjct:  230 VAELGSCFLMGELGLPTTDNLDSHAAYVGNWLKAMKGDTRFIFKAAATASKAVDFLLSNVRQPE 293          
BLAST of mRNA_M-pyrifera_M_contig120064.4143.1 vs. uniprot
Match: A0A2S8F619_9BACT (Uncharacterized protein n=2 Tax=Pirellulaceae TaxID=2691357 RepID=A0A2S8F619_9BACT)

HSP 1 Score: 88.2 bits (217), Expect = 2.190e-19
Identity = 39/62 (62.90%), Postives = 50/62 (80.65%), Query Frame = 1
Query:    1 VAEIGSCFLMGELQMPTTENLENHAAYLKSWLKGMNDDPKFIFRAAAQSSKATDYILSFSRK 186
            +AEIG+C+L GEL +P  + +ENHA+YLKSWL  M  D  FIFRA +Q+SKATDYILSFS++
Sbjct:  243 IAEIGACYLCGELGVPMADRIENHASYLKSWLSAMKQDAGFIFRATSQASKATDYILSFSQE 304          
BLAST of mRNA_M-pyrifera_M_contig120064.4143.1 vs. uniprot
Match: A0A142YME4_9PLAN (DNA primase TraC n=1 Tax=Planctomyces sp. SH-PL62 TaxID=1636152 RepID=A0A142YME4_9PLAN)

HSP 1 Score: 87.0 bits (214), Expect = 5.870e-19
Identity = 38/61 (62.30%), Postives = 50/61 (81.97%), Query Frame = 1
Query:    1 VAEIGSCFLMGELQMPTTENLENHAAYLKSWLKGMNDDPKFIFRAAAQSSKATDYILSFSR 183
            VAEIG+C+L  EL +P + NL+NH AYL +WL+ M DDP+FIF A+AQ+SKA DY+L+FSR
Sbjct:  240 VAEIGACYLARELGVPASGNLDNHVAYLANWLRAMKDDPRFIFTASAQASKAADYLLAFSR 300          
BLAST of mRNA_M-pyrifera_M_contig120064.4143.1 vs. uniprot
Match: A0A5C6E392_9BACT (DNA primase TraC n=1 Tax=Novipirellula artificiosorum TaxID=2528016 RepID=A0A5C6E392_9BACT)

HSP 1 Score: 83.2 bits (204), Expect = 1.290e-17
Identity = 35/61 (57.38%), Postives = 49/61 (80.33%), Query Frame = 1
Query:    4 AEIGSCFLMGELQMPTTENLENHAAYLKSWLKGMNDDPKFIFRAAAQSSKATDYILSFSRK 186
            AEIG+C LM EL +P  +NL+NHA+YL+ WL+ + +DP FIF  +AQS+KA DY+LSFS++
Sbjct:  224 AEIGACLLMAELGLPVAQNLDNHASYLQHWLRQLREDPNFIFFVSAQSNKAVDYLLSFSKQ 284          
BLAST of mRNA_M-pyrifera_M_contig120064.4143.1 vs. uniprot
Match: UPI00142211CC (zincin-like metallopeptidase domain-containing protein n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI00142211CC)

HSP 1 Score: 82.0 bits (201), Expect = 3.590e-17
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 VAEIGSCFLMGELQMPTTENLENHAAYLKSWLKGMNDDPKFIFRAAAQSSKATDYILSF 177
            VAE+ SCFL  EL +P  E LENHAAYLKSWL  M DD  FIF+AA Q+SK  D++LSF
Sbjct:  231 VAEMASCFLATELGVPQGEGLENHAAYLKSWLSSMKDDASFIFKAATQASKTADFLLSF 289          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120064.4143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518IT16_9BACT5.500e-3696.92DNA primase TraC n=1 Tax=Rosistilla oblonga TaxID=... [more]
A0A2G1W715_9BACT1.540e-3595.38Uncharacterized protein n=1 Tax=Rhodopirellula bah... [more]
UPI00118B282D1.690e-2671.88zincin-like metallopeptidase domain-containing pro... [more]
UPI001E601EE22.640e-2679.69zincin-like metallopeptidase domain-containing pro... [more]
A0A518CMM9_9PLAN1.520e-2062.90DNA primase TraC n=1 Tax=Polystyrenella longa TaxI... [more]
UPI0014205A8C1.360e-1962.50zincin-like metallopeptidase domain-containing pro... [more]
A0A2S8F619_9BACT2.190e-1962.90Uncharacterized protein n=2 Tax=Pirellulaceae TaxI... [more]
A0A142YME4_9PLAN5.870e-1962.30DNA primase TraC n=1 Tax=Planctomyces sp. SH-PL62 ... [more]
A0A5C6E392_9BACT1.290e-1757.38DNA primase TraC n=1 Tax=Novipirellula artificioso... [more]
UPI00142211CC3.590e-1764.41zincin-like metallopeptidase domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120064contigM-pyrifera_M_contig120064:277..471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score72.4
Seed ortholog evalue7.5e-11
Seed eggNOG ortholog756272.Plabr_0960
Preferred nametraC
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Domain of unknown function (DUF1738)
EggNOG OGs2J0I3@203682,COG4227@1,COG4227@2
COG Functional cat.L
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size195
Cds size168
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.5045164-CDS-M-pyrifera_M_contig120064:276..4441622815720.5045164-CDS-M-pyrifera_M_contig120064:276..444Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120064 277..444 -
1692277537.5464065-CDS-M-pyrifera_M_contig120064:276..4441692277537.5464065-CDS-M-pyrifera_M_contig120064:276..444Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120064 277..444 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.51656-UTR-M-pyrifera_M_contig120064:444..4711622815720.51656-UTR-M-pyrifera_M_contig120064:444..471Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig120064 445..471 -
1692277537.5581357-UTR-M-pyrifera_M_contig120064:444..4711692277537.5581357-UTR-M-pyrifera_M_contig120064:444..471Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig120064 445..471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120064.4143.1prot_M-pyrifera_M_contig120064.4143.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120064 277..444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120064.4143.1

>prot_M-pyrifera_M_contig120064.4143.1 ID=prot_M-pyrifera_M_contig120064.4143.1|Name=mRNA_M-pyrifera_M_contig120064.4143.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=56bp
MGELQMPTTENLENHAAYLKSWLKGMNDDPKFIFRAAAQSSKATDYILSF
SRKDET
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mRNA from alignment at M-pyrifera_M_contig120064:277..471-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120064.4143.1 ID=mRNA_M-pyrifera_M_contig120064.4143.1|Name=mRNA_M-pyrifera_M_contig120064.4143.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig120064:277..471- (Macrocystis pyrifera P11B4 male)
GTTGCCGAAATCGGTTCGTGTTTTCTCATGGGCGAGCTGCAAATGCCCAC GACGGAGAATCTCGAAAACCATGCTGCTTATTTGAAGTCATGGCTTAAAG GGATGAACGACGACCCGAAATTTATCTTTAGGGCAGCGGCTCAGTCGAGC AAAGCGACTGACTACATCCTCAGTTTCAGTCGCAAAGATGAAACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120064:277..471-

>mRNA_M-pyrifera_M_contig120064.4143.1 ID=mRNA_M-pyrifera_M_contig120064.4143.1|Name=mRNA_M-pyrifera_M_contig120064.4143.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig120064:277..471- (Macrocystis pyrifera P11B4 male)
ATGGGCGAGCTGCAAATGCCCACGACGGAGAATCTCGAAAACCATGCTGC
TTATTTGAAGTCATGGCTTAAAGGGATGAACGACGACCCGAAATTTATCT
TTAGGGCAGCGGCTCAGTCGAGCAAAGCGACTGACTACATCCTCAGTTTC
AGTCGCAAAGATGAAACGATGGGCGAGCTGCAAATGCCCACGACGGAGAA
TCTCGAAAACCATGCTGCTTATTTGAAGTCATGGCTTAAAGGGATGAACG
ACGACCCGAAATTTATCTTTAGGGCAGCGGCTCAGTCGAGCAAAGCGACT
GACTACATCCTCAGTTTCAGTCGCAAAGATGAAACG
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