mRNA_M-pyrifera_M_contig119824.4078.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119824.4078.1
Unique NamemRNA_M-pyrifera_M_contig119824.4078.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119824.4078.1 vs. uniprot
Match: A0A7S2AR26_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AR26_9STRA)

HSP 1 Score: 166 bits (420), Expect = 1.700e-48
Identity = 78/105 (74.29%), Postives = 87/105 (82.86%), Query Frame = 1
Query:    1 LIKLNERGFGREGSGLGLDLVYNPLGAFLPPPQEELHNRYKAELKEAFGIDFNNLFTMTNMPIKRFADFLWRRGELKEYLDLLVRNFNFDTVEGLMCRNHVNVAW 315
            L+KLNE G+G+EGSGL LDLVYNPLGAFLPPPQ  L  +YK EL + FGI FN LFTMTNMPIKRFAD L+RRGELK+Y+DLLVRNFN DTV  LMC N +NV W
Sbjct:  177 LLKLNEAGYGKEGSGLVLDLVYNPLGAFLPPPQAPLTEKYKQELMDVFGIRFNELFTMTNMPIKRFADLLYRRGELKDYMDLLVRNFNPDTVSNLMCTNTLNVRW 281          
BLAST of mRNA_M-pyrifera_M_contig119824.4078.1 vs. uniprot
Match: A0A7S2WVW2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVW2_9STRA)

HSP 1 Score: 165 bits (417), Expect = 3.210e-47
Identity = 74/105 (70.48%), Postives = 92/105 (87.62%), Query Frame = 1
Query:    1 LIKLNERGFGREGSGLGLDLVYNPLGAFLPPPQEELHNRYKAELKEAFGIDFNNLFTMTNMPIKRFADFLWRRGELKEYLDLLVRNFNFDTVEGLMCRNHVNVAW 315
            L++LN+RG+G+EGSGL LDLVYNP+GAFLPPPQE L  +YK EL +AFGI+FN LFT+TNMPIKRFADFL+RRGELK+Y++LLVRNFN  TV+ +MC + V+V W
Sbjct:  254 LLRLNDRGYGKEGSGLFLDLVYNPIGAFLPPPQEALEAKYKEELMDAFGIEFNGLFTITNMPIKRFADFLYRRGELKDYMELLVRNFNPSTVDSVMCTSTVSVGW 358          
BLAST of mRNA_M-pyrifera_M_contig119824.4078.1 vs. uniprot
Match: A0A8J1YD72_OWEFU (Ofus.G25393 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1YD72_OWEFU)

HSP 1 Score: 164 bits (414), Expect = 1.370e-46
Identity = 75/105 (71.43%), Postives = 89/105 (84.76%), Query Frame = 1
Query:    1 LIKLNERGFGREGSGLGLDLVYNPLGAFLPPPQEELHNRYKAELKEAFGIDFNNLFTMTNMPIKRFADFLWRRGELKEYLDLLVRNFNFDTVEGLMCRNHVNVAW 315
            L KLN  GFG EGS L LDLVYNPLG +LPPPQEEL ++YK E+ E FG++FN LFTMTNMPIKRFADFL+RR EL+EYL+LLVRN+N  T++ LMCRNH+NV+W
Sbjct:  286 LRKLNSLGFGVEGSDLHLDLVYNPLGNYLPPPQEELAHQYKTEMMENFGVEFNMLFTMTNMPIKRFADFLYRRNELQEYLELLVRNYNIATIDNLMCRNHLNVSW 390          
BLAST of mRNA_M-pyrifera_M_contig119824.4078.1 vs. uniprot
Match: F0XY08_AURAN (Selenoprotein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY08_AURAN)

HSP 1 Score: 163 bits (412), Expect = 3.460e-46
Identity = 76/102 (74.51%), Postives = 87/102 (85.29%), Query Frame = 1
Query:   10 LNERGFGREGSGLGLDLVYNPLGAFLPPPQEELHNRYKAELKEAFGIDFNNLFTMTNMPIKRFADFLWRRGELKEYLDLLVRNFNFDTVEGLMCRNHVNVAW 315
            LNE G+G EGS L +DLVYNPLGAFLPPPQE L  +Y+ ELK  FG+DF+ LFTMTNMPIKRFADFL RRGELK+YLDLLVRNFN DTV+ LMCRN ++V+W
Sbjct:  297 LNEAGYGAEGSDLRMDLVYNPLGAFLPPPQEALEAKYREELKREFGVDFDELFTMTNMPIKRFADFLSRRGELKDYLDLLVRNFNPDTVDTLMCRNTLSVSW 398          
BLAST of mRNA_M-pyrifera_M_contig119824.4078.1 vs. uniprot
Match: A0A7S1BVR4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BVR4_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.260e-45
Identity = 74/104 (71.15%), Postives = 88/104 (84.62%), Query Frame = 1
Query:    1 LIKLNERGFGREGSGLGLDLVYNPLGAFLPPPQEELHNRYKAELKEAFGIDFNNLFTMTNMPIKRFADFLWRRGELKEYLDLLVRNFNFDTVEGLMCRNHVNVA 312
            L  LNE G+G  GSGL LDLVYNPLGAFLPP Q+ L ++Y+ EL + FGI FN+L+TMTNMPIKRFADFL+RRGEL+EY++LLVRNFN DT+EGLMCRN V+V 
Sbjct:  165 LAMLNEAGYGTAGSGLVLDLVYNPLGAFLPPDQQMLEDKYREELLDNFGIQFNHLYTMTNMPIKRFADFLYRRGELQEYMELLVRNFNTDTIEGLMCRNTVSVG 268          
BLAST of mRNA_M-pyrifera_M_contig119824.4078.1 vs. uniprot
Match: A0A6V1UUT3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UUT3_HETAK)

HSP 1 Score: 160 bits (405), Expect = 4.050e-45
Identity = 75/105 (71.43%), Postives = 87/105 (82.86%), Query Frame = 1
Query:    1 LIKLNERGFGREGSGLGLDLVYNPLGAFLPPPQEELHNRYKAELKEAFGIDFNNLFTMTNMPIKRFADFLWRRGELKEYLDLLVRNFNFDTVEGLMCRNHVNVAW 315
            L KLNE G+GREG+GL LDLVYNPLGAFLPPPQ  L  +Y+ EL E FGI+FN LFT++NMPIKRFADFL RRGEL+EY+ LLVR FN   V+GLMCRNH++V W
Sbjct:  289 LRKLNELGYGREGTGLHLDLVYNPLGAFLPPPQAALEEKYREELMEHFGIEFNGLFTISNMPIKRFADFLHRRGELEEYMGLLVRTFNPAAVQGLMCRNHLSVRW 393          
BLAST of mRNA_M-pyrifera_M_contig119824.4078.1 vs. uniprot
Match: A0A836C7A2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7A2_9STRA)

HSP 1 Score: 159 bits (402), Expect = 6.580e-45
Identity = 75/105 (71.43%), Postives = 88/105 (83.81%), Query Frame = 1
Query:    1 LIKLNERGFGREGSGLGLDLVYNPLGAFLPPPQEELHNRYKAELKEAFGIDFNNLFTMTNMPIKRFADFLWRRGELKEYLDLLVRNFNFDTVEGLMCRNHVNVAW 315
            L +LN  G+G EGSGL LDLVYNPLGAFLPPPQE L  +YK EL EAFGI FN+LFT+TNMPIKRFADFL+RRGELK+Y++LLVRNFN    +GLMC++ V+V W
Sbjct:  257 LRQLNALGYGVEGSGLSLDLVYNPLGAFLPPPQEALEAKYKEELMEAFGITFNSLFTITNMPIKRFADFLYRRGELKDYMELLVRNFNPAATKGLMCKDTVSVGW 361          
BLAST of mRNA_M-pyrifera_M_contig119824.4078.1 vs. uniprot
Match: A0A8B8ADA8_CRAVI (uncharacterized protein LOC111101300 n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8ADA8_CRAVI)

HSP 1 Score: 149 bits (376), Expect = 3.070e-44
Identity = 71/105 (67.62%), Postives = 82/105 (78.10%), Query Frame = 1
Query:    1 LIKLNERGFGREGSGLGLDLVYNPLGAFLPPPQEELHNRYKAELKEAFGIDFNNLFTMTNMPIKRFADFLWRRGELKEYLDLLVRNFNFDTVEGLMCRNHVNVAW 315
            L K N  G+  E SGL LDLVYNP+GAFLPPPQE L  +Y+ EL E FGI FN LFT+TNMPIKRFADFL RR EL++YL+LLVRNFN  TV+ +MCRN +NV W
Sbjct:   15 LRKFNSLGYADETSGLKLDLVYNPIGAFLPPPQEPLAEKYREELWEYFGIRFNQLFTITNMPIKRFADFLIRRNELEDYLELLVRNFNIHTVDNIMCRNLINVNW 119          
BLAST of mRNA_M-pyrifera_M_contig119824.4078.1 vs. uniprot
Match: UPI0018D6A746 (uncharacterized protein LOC119721737 n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D6A746)

HSP 1 Score: 157 bits (398), Expect = 7.090e-44
Identity = 72/105 (68.57%), Postives = 87/105 (82.86%), Query Frame = 1
Query:    1 LIKLNERGFGREGSGLGLDLVYNPLGAFLPPPQEELHNRYKAELKEAFGIDFNNLFTMTNMPIKRFADFLWRRGELKEYLDLLVRNFNFDTVEGLMCRNHVNVAW 315
            L+ LN+ G+GR+  GL LDLVYNPLG FLPP Q EL  +YK EL + FGI+FNNL+T+TNMPIKRFADFL+RR EL++Y+ LLVRNFN  +VEGLMCRNH+NV W
Sbjct:  317 LLLLNQLGYGRQDGGLRLDLVYNPLGGFLPPSQAELEAKYKEELWDTFGIEFNNLYTITNMPIKRFADFLYRRNELEDYMQLLVRNFNPASVEGLMCRNHLNVNW 421          
BLAST of mRNA_M-pyrifera_M_contig119824.4078.1 vs. uniprot
Match: A0A7S4NJP5_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NJP5_9EUKA)

HSP 1 Score: 155 bits (392), Expect = 2.570e-43
Identity = 74/105 (70.48%), Postives = 85/105 (80.95%), Query Frame = 1
Query:    1 LIKLNERGFGREGSGLGLDLVYNPLGAFLPPPQEELHNRYKAELKEAFGIDFNNLFTMTNMPIKRFADFLWRRGELKEYLDLLVRNFNFDTVEGLMCRNHVNVAW 315
            L KLNE G+G+  S L LDLVYNPLGAFLPPPQ  L  +YK EL E FGI FNNL T+TNMPIKRFADFL+RRGEL+EY++LLVRNFN  T EGLMCR+ ++V W
Sbjct:  274 LQKLNEVGYGQPESDLKLDLVYNPLGAFLPPPQGPLEEKYKEELMEHFGIKFNNLLTITNMPIKRFADFLYRRGELEEYMELLVRNFNPSTTEGLMCRDTISVGW 378          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119824.4078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2AR26_9STRA1.700e-4874.29Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2WVW2_9STRA3.210e-4770.48Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J1YD72_OWEFU1.370e-4671.43Ofus.G25393 protein n=1 Tax=Owenia fusiformis TaxI... [more]
F0XY08_AURAN3.460e-4674.51Selenoprotein (Fragment) n=1 Tax=Aureococcus anoph... [more]
A0A7S1BVR4_9STRA1.260e-4571.15Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A6V1UUT3_HETAK4.050e-4571.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836C7A2_9STRA6.580e-4571.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8B8ADA8_CRAVI3.070e-4467.62uncharacterized protein LOC111101300 n=1 Tax=Crass... [more]
UPI0018D6A7467.090e-4468.57uncharacterized protein LOC119721737 n=1 Tax=Patir... [more]
A0A7S4NJP5_9EUKA2.570e-4370.48Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119824contigM-pyrifera_M_contig119824:6..542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue3.6e-38
Seed eggNOG ortholog44056.XP_009033129.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF3641)
EggNOG OGs2QWFM@2759,COG0535@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.6137881-CDS-M-pyrifera_M_contig119824:5..1561622815717.6137881-CDS-M-pyrifera_M_contig119824:5..156Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119824 6..156 -
1692277536.4093947-CDS-M-pyrifera_M_contig119824:5..1561692277536.4093947-CDS-M-pyrifera_M_contig119824:5..156Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119824 6..156 -
1622815717.6258667-CDS-M-pyrifera_M_contig119824:378..5421622815717.6258667-CDS-M-pyrifera_M_contig119824:378..542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119824 379..542 -
1692277536.4216204-CDS-M-pyrifera_M_contig119824:378..5421692277536.4216204-CDS-M-pyrifera_M_contig119824:378..542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119824 379..542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119824.4078.1prot_M-pyrifera_M_contig119824.4078.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119824 6..542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119824.4078.1

>prot_M-pyrifera_M_contig119824.4078.1 ID=prot_M-pyrifera_M_contig119824.4078.1|Name=mRNA_M-pyrifera_M_contig119824.4078.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
LIKLNERGFGREGSGLGLDLVYNPLGAFLPPPQEELHNRYKAELKEAFGI
DFNNLFTMTNMPIKRFADFLWRRGELKEYLDLLVRNFNFDTVEGLMCRNH
VNVAW
back to top

mRNA from alignment at M-pyrifera_M_contig119824:6..542-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119824.4078.1 ID=mRNA_M-pyrifera_M_contig119824.4078.1|Name=mRNA_M-pyrifera_M_contig119824.4078.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=537bp|location=Sequence derived from alignment at M-pyrifera_M_contig119824:6..542- (Macrocystis pyrifera P11B4 male)
CTGATCAAGCTGAACGAGCGGGGGTTTGGCAGGGAAGGGAGCGGCCTGGG ACTCGACCTCGTCTACAATCCCCTGGGCGCTTTCTTGCCCCCTCCCCAGG AGGAGCTGCACAACCGCTACAAAGCAGAGCTGAAAGAAGCCTTTGGCATT GACTTCAACAACTTGTACGCATTACCCTCCTATGTCTCTCCCTGTTTCAC ACTCCATCGCTTCTCTGACCTGAAGAAGAGAGGTTGTGCGAGAGGGCTTT CGTTTCGCATATTTTCTCTCCCTCTGTGTCTCTCACGTACATTCCACTCT CCCGTTCTCACTCTTGCTCTCGCTCGTTCTCGCTCTCTCACTGTGTCTCA ATCTCGCCGTCACTGACATGGTTGCGACTCTGTCAGGTTCACGATGACAA ACATGCCAATCAAACGCTTTGCAGACTTCTTGTGGAGGAGGGGAGAATTG AAGGAGTATTTGGACCTGCTCGTCCGGAATTTCAACTTTGACACAGTGGA GGGCCTGATGTGCAGGAACCACGTGAATGTGGCCTGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig119824:6..542-

>mRNA_M-pyrifera_M_contig119824.4078.1 ID=mRNA_M-pyrifera_M_contig119824.4078.1|Name=mRNA_M-pyrifera_M_contig119824.4078.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig119824:6..542- (Macrocystis pyrifera P11B4 male)
CTGATCAAGCTGAACGAGCGGGGGTTTGGCAGGGAAGGGAGCGGCCTGGG
ACTCGACCTCGTCTACAATCCCCTGGGCGCTTTCTTGCCCCCTCCCCAGG
AGGAGCTGCACAACCGCTACAAAGCAGAGCTGAAAGAAGCCTTTGGCATT
GACTTCAACAACTTCTGATCAAGCTGAACGAGCGGGGGTTTGGCAGGGAA
GGGAGCGGCCTGGGACTCGACCTCGTCTACAATCCCCTGGGCGCTTTCTT
GCCCCCTCCCCAGGAGGAGCTGCACAACCGCTACAAAGCAGAGCTGAAAG
AAGCCTTTGGCATTGACTTCAACAACTTGTTCACGATGACAAACATGCCA
ATCAAACGCTTTGCAGACTTCTTGTGGAGGAGGGGAGAATTGAAGGAGTA
TTTGGACCTGCTCGTCCGGAATTTCAACTTTGACACAGTGGAGGGCCTGA
TGTGCAGGAACCACGTGAATGTGGCCTGGGTTCACGATGACAAACATGCC
AATCAAACGCTTTGCAGACTTCTTGTGGAGGAGGGGAGAATTGAAGGAGT
ATTTGGACCTGCTCGTCCGGAATTTCAACTTTGACACAGTGGAGGGCCTG
ATGTGCAGGAACCACGTGAATGTGGCCTGG
back to top