mRNA_M-pyrifera_M_contig119426.4004.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119426.4004.1
Unique NamemRNA_M-pyrifera_M_contig119426.4004.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119426.4004.1 vs. uniprot
Match: A0A6T7WK53_9CRYP (CCT-eta n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A6T7WK53_9CRYP)

HSP 1 Score: 164 bits (415), Expect = 7.780e-46
Identity = 81/112 (72.32%), Postives = 97/112 (86.61%), Query Frame = 1
Query:   67 ETRELLVRCAATAMNSKLIGSHKDFFAPLVVDAVLKLDLDQDLNLIGVKKVPGGSMEDSVLVEGVAFKKTFSYAGFEQQPKKIVNPKIIALNLELELKAEKDNAEVRLETAE 402
            E RELL++CAAT++NSKLI   KDFFAP+VVDAVL LD D  L++IGVKK+PGG++EDS LV+GVAFKKTFSYAGFEQQPKK  NPKI  LN+ELELK+EK+NAE+RL+  E
Sbjct:   90 ERRELLIKCAATSLNSKLISHQKDFFAPIVVDAVLSLDEDLSLDMIGVKKIPGGALEDSFLVKGVAFKKTFSYAGFEQQPKKFKNPKICLLNIELELKSEKENAEIRLDDPE 201          
BLAST of mRNA_M-pyrifera_M_contig119426.4004.1 vs. uniprot
Match: A0A2P6N9U7_9EUKA (CCT-eta n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N9U7_9EUKA)

HSP 1 Score: 162 bits (411), Expect = 8.030e-45
Identity = 82/112 (73.21%), Postives = 96/112 (85.71%), Query Frame = 1
Query:   67 ETRELLVRCAATAMNSKLIGSHKDFFAPLVVDAVLKLDLDQDLNLIGVKKVPGGSMEDSVLVEGVAFKKTFSYAGFEQQPKKIVNPKIIALNLELELKAEKDNAEVRLETAE 402
            E R+LL +CAATA+NSKL+ SH+DFFA +VVDAV  LD D  LNLIG+KK  GGS+ DS LV+GVAFKKTFSYAGFEQQPKK VNPKIIALN+ELELK+EK+NAE+R+E  E
Sbjct:  155 EKRQLLEKCAATALNSKLVSSHRDFFAKMVVDAVFHLDDDLTLNLIGIKKENGGSLGDSYLVDGVAFKKTFSYAGFEQQPKKFVNPKIIALNIELELKSEKENAEIRIENPE 266          
BLAST of mRNA_M-pyrifera_M_contig119426.4004.1 vs. uniprot
Match: A0A367IIB2_RHIST (T-complex protein 1 subunit eta (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367IIB2_RHIST)

HSP 1 Score: 155 bits (393), Expect = 3.900e-44
Identity = 84/115 (73.04%), Postives = 95/115 (82.61%), Query Frame = 1
Query:   67 ETRELLVRCAATAMNSKLIGSHKDFFAPLVVDAVLKLDLDQDLN--LIGVKKVPGGSMEDSVLVEGVAFKKTFSYAGFEQQPKKIVNPKIIALNLELELKAEKDNAEVRLETAED 405
            E R+LL +CAATAMNSKLI S KDFF  +VVDAVL LD  + LN  LIG+K+VPGG+M+DSVLV GVAFKKTFSYAGFEQQPK   NPKI+ LN+ELELKAEKDNAEVR+E   D
Sbjct:    1 EFRDLLSKCAATAMNSKLIYSQKDFFTKMVVDAVLSLD-QESLNERLIGIKRVPGGAMQDSVLVNGVAFKKTFSYAGFEQQPKSFKNPKILCLNVELELKAEKDNAEVRVEQVSD 114          
BLAST of mRNA_M-pyrifera_M_contig119426.4004.1 vs. uniprot
Match: A0A192ZHV3_9EUKA (CCT-eta n=1 Tax=Stygiella incarcerata TaxID=1712417 RepID=A0A192ZHV3_9EUKA)

HSP 1 Score: 160 bits (405), Expect = 5.890e-44
Identity = 84/131 (64.12%), Postives = 104/131 (79.39%), Query Frame = 1
Query:    1 KSETYALSFLALPRTG-ADLLLSETRELLVRCAATAMNSKLIGSHKDFFAPLVVDAVLKLDLDQDLNLIGVKKVPGGSMEDSVLVEGVAFKKTFSYAGFEQQPKKIVNPKIIALNLELELKAEKDNAEVRL 390
            K+ +++LS+L       AD    E R++LV CA T +NSKLI  HKDFFA + VDAV+ LD D +++LIGVKKVPGGSM+DS LV+GVAFKKTFSYAGFEQQ KK VNPKI+ LN+ELELKAE++NAE+RL
Sbjct:  128 KALSFSLSYLETHSISIADKKKEELRKVLVNCARTTLNSKLISGHKDFFAEMAVDAVMALDEDLNMDLIGVKKVPGGSMQDSFLVDGVAFKKTFSYAGFEQQKKKFVNPKILLLNVELELKAERENAEIRL 258          
BLAST of mRNA_M-pyrifera_M_contig119426.4004.1 vs. uniprot
Match: A0A699L2M8_TANCI (T-complex protein 1 subunit eta (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699L2M8_TANCI)

HSP 1 Score: 154 bits (389), Expect = 8.340e-44
Identity = 76/108 (70.37%), Postives = 90/108 (83.33%), Query Frame = 1
Query:   67 ETRELLVRCAATAMNSKLIGSHKDFFAPLVVDAVLKLDLDQDLNLIGVKKVPGGSMEDSVLVEGVAFKKTFSYAGFEQQPKKIVNPKIIALNLELELKAEKDNAEVRL 390
            E R LL +CAAT ++SKLIG  KDFFA +VVDAV+ +  D  LN+IG+KKVPGG+M DS LV GVAFKKTFSYAGFEQQPKK  NPKI+ LN+ELELK+EK+NAE+RL
Sbjct:   61 EKRSLLAKCAATTLSSKLIGGEKDFFATMVVDAVVAIGNDDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFSNPKILLLNIELELKSEKENAEIRL 168          
BLAST of mRNA_M-pyrifera_M_contig119426.4004.1 vs. uniprot
Match: L8GWE7_ACACA (CCT-eta n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GWE7_ACACA)

HSP 1 Score: 159 bits (402), Expect = 1.270e-43
Identity = 81/114 (71.05%), Postives = 96/114 (84.21%), Query Frame = 1
Query:   64 SETRELLVRCAATAMNSKLIGSHKDFFAPLVVDAVLKLDLDQDLNLIGVKKVPGGSMEDSVLVEGVAFKKTFSYAGFEQQPKKIVNPKIIALNLELELKAEKDNAEVRLETAED 405
            +E R +L RCA TA+NSKLIGSH  FF+ +VVDAV+ LD D +++LIG+KK  GGSMEDS+L+EGVAFKK FSYAGFEQQPKKI NPKI+ LNLELELKAEKDNAE+R+E   D
Sbjct:  153 TEMRTVLERCAGTALNSKLIGSHNAFFSKMVVDAVMHLDEDLNIDLIGIKKEKGGSMEDSLLIEGVAFKKCFSYAGFEQQPKKIPNPKILLLNLELELKAEKDNAELRIEDPAD 266          
BLAST of mRNA_M-pyrifera_M_contig119426.4004.1 vs. uniprot
Match: A0A1R2CQ77_9CILI (CCT-eta n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CQ77_9CILI)

HSP 1 Score: 158 bits (399), Expect = 1.910e-43
Identity = 78/113 (69.03%), Postives = 97/113 (85.84%), Query Frame = 1
Query:   67 ETRELLVRCAATAMNSKLIGSHKDFFAPLVVDAVLKLDLDQDLNLIGVKKVPGGSMEDSVLVEGVAFKKTFSYAGFEQQPKKIVNPKIIALNLELELKAEKDNAEVRLETAED 405
            E RELLV+CA T++NSKL+ S+K+FFA +VVDAV+KLD D + N+IG+K V GGS+ +S LV+GVAFKKTFSYAGFEQQPKK  NPKI+ LNLELELK+EK+NAE+R+E  ED
Sbjct:  105 EFRELLVKCAKTSLNSKLVASYKEFFAEIVVDAVMKLDADLEKNMIGIKHVQGGSVLNSFLVDGVAFKKTFSYAGFEQQPKKFENPKIVILNLELELKSEKENAEIRIENPED 217          
BLAST of mRNA_M-pyrifera_M_contig119426.4004.1 vs. uniprot
Match: UPI001C16611D (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C16611D)

HSP 1 Score: 153 bits (387), Expect = 1.980e-43
Identity = 79/109 (72.48%), Postives = 97/109 (88.99%), Query Frame = 1
Query:   73 RELLVRCAATAMNSKLIGSHKDFFAPLVVDAVLKLDLDQDLN--LIGVKKVPGGSMEDSVLVEGVAFKKTFSYAGFEQQPKKIVNPKIIALNLELELKAEKDNAEVRLE 393
            R+LL +CA TAM+SKLI SH+DFF  +VV+AVLKLD  ++LN  LIGVK++PGG+MEDS+LV+GVAFKKTFSYAGFEQQPK   NPKI++LN+ELELKAEKDNAEVR++
Sbjct:  158 RDLLKKCAGTAMSSKLIHSHEDFFTDMVVNAVLKLD-QEELNEKLIGVKRIPGGAMEDSLLVDGVAFKKTFSYAGFEQQPKSFKNPKILSLNIELELKAEKDNAEVRID 265          
BLAST of mRNA_M-pyrifera_M_contig119426.4004.1 vs. uniprot
Match: A0A7S3J9Y8_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3J9Y8_9SPIT)

HSP 1 Score: 150 bits (380), Expect = 2.310e-43
Identity = 74/113 (65.49%), Postives = 94/113 (83.19%), Query Frame = 1
Query:   67 ETRELLVRCAATAMNSKLIGSHKDFFAPLVVDAVLKLDLDQDLNLIGVKKVPGGSMEDSVLVEGVAFKKTFSYAGFEQQPKKIVNPKIIALNLELELKAEKDNAEVRLETAED 405
            E +++L +CA T++NSKLI S+KDFF+ +VV AV KLD D D+ +IG+KKV GGS+ DS+L+EGVAFKKTFSYAGFEQQ KK  NPKI  LNLELELK+EK+NAE+R+E  +D
Sbjct:   59 EKKDMLKKCAMTSLNSKLINSYKDFFSDMVVTAVTKLDEDLDMKMIGIKKVTGGSVTDSLLIEGVAFKKTFSYAGFEQQSKKFENPKICLLNLELELKSEKENAEIRIENPDD 171          
BLAST of mRNA_M-pyrifera_M_contig119426.4004.1 vs. uniprot
Match: A0A6J0NYD2_RAPSA (T-complex protein 1 subunit eta-like n=2 Tax=malvids TaxID=91836 RepID=A0A6J0NYD2_RAPSA)

HSP 1 Score: 153 bits (387), Expect = 3.010e-43
Identity = 75/108 (69.44%), Postives = 92/108 (85.19%), Query Frame = 1
Query:   67 ETRELLVRCAATAMNSKLIGSHKDFFAPLVVDAVLKLDLDQDLNLIGVKKVPGGSMEDSVLVEGVAFKKTFSYAGFEQQPKKIVNPKIIALNLELELKAEKDNAEVRL 390
            E + LL +CAAT ++SKLIG  K+FFA +VVDAV+ +  D  LNLIG+KKVPGG+M DS LV+GVAFKKTFSYAGFEQQPKK +NPKI+ LN+ELELK+EK+NAE+RL
Sbjct:  153 EKKGLLAKCAATTLSSKLIGGEKEFFATMVVDAVMAIGDDDRLNLIGIKKVPGGNMRDSFLVDGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRL 260          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119426.4004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6T7WK53_9CRYP7.780e-4672.32CCT-eta n=1 Tax=Cryptomonas curvata TaxID=233186 R... [more]
A0A2P6N9U7_9EUKA8.030e-4573.21CCT-eta n=1 Tax=Planoprotostelium fungivorum TaxID... [more]
A0A367IIB2_RHIST3.900e-4473.04T-complex protein 1 subunit eta (Fragment) n=1 Tax... [more]
A0A192ZHV3_9EUKA5.890e-4464.12CCT-eta n=1 Tax=Stygiella incarcerata TaxID=171241... [more]
A0A699L2M8_TANCI8.340e-4470.37T-complex protein 1 subunit eta (Fragment) n=1 Tax... [more]
L8GWE7_ACACA1.270e-4371.05CCT-eta n=1 Tax=Acanthamoeba castellanii str. Neff... [more]
A0A1R2CQ77_9CILI1.910e-4369.03CCT-eta n=1 Tax=Stentor coeruleus TaxID=5963 RepID... [more]
UPI001C16611D1.980e-4372.48Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
A0A7S3J9Y8_9SPIT2.310e-4365.49Hypothetical protein (Fragment) n=1 Tax=Euplotes h... [more]
A0A6J0NYD2_RAPSA3.010e-4369.44T-complex protein 1 subunit eta-like n=2 Tax=malvi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119426contigM-pyrifera_M_contig119426:2..460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score157.9
Seed ortholog evalue3.3e-36
Seed eggNOG ortholog15368.BRADI3G04430.1
KEGG koko:K09499
Hectar predicted targeting categoryother localisation
EggNOG free text desc.assists the folding of proteins upon ATP hydrolysis
EggNOG OGs37PEU@33090,3G748@35493,3I9Y5@38820,3KXTW@4447,COG0459@1,KOG0361@2759
COG Functional cat.O
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110,ko04147
Exons2
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815713.9012604-CDS-M-pyrifera_M_contig119426:1..1691622815713.9012604-CDS-M-pyrifera_M_contig119426:1..169Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119426 2..169 -
1692277534.8076093-CDS-M-pyrifera_M_contig119426:1..1691692277534.8076093-CDS-M-pyrifera_M_contig119426:1..169Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119426 2..169 -
1622815713.9139988-CDS-M-pyrifera_M_contig119426:223..4601622815713.9139988-CDS-M-pyrifera_M_contig119426:223..460Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119426 224..460 -
1692277534.8207479-CDS-M-pyrifera_M_contig119426:223..4601692277534.8207479-CDS-M-pyrifera_M_contig119426:223..460Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119426 224..460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119426.4004.1prot_M-pyrifera_M_contig119426.4004.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119426 2..460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119426.4004.1

>prot_M-pyrifera_M_contig119426.4004.1 ID=prot_M-pyrifera_M_contig119426.4004.1|Name=mRNA_M-pyrifera_M_contig119426.4004.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
KSETYALSFLALPRTGADLLLSETRELLVRCAATAMNSKLIGSHKDFFAP
LVVDAVLKLDLDQDLNLIGVKKVPGGSMEDSVLVEGVAFKKTFSYAGFEQ
QPKKIVNPKIIALNLELELKAEKDNAEVRLETAED
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mRNA from alignment at M-pyrifera_M_contig119426:2..460-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119426.4004.1 ID=mRNA_M-pyrifera_M_contig119426.4004.1|Name=mRNA_M-pyrifera_M_contig119426.4004.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig119426:2..460- (Macrocystis pyrifera P11B4 male)
AAGAGTGAGACGTACGCACTTTCATTCCTTGCGCTGCCGCGTACTGGCGC TGACCTGCTCCTCAGCGAGACCAGGGAGCTCCTCGTTCGCTGCGCTGCCA CGGCGATGAACTCTAAGCTCATCGGAAGCCACAAGGACTTCTTTGCGCCC CTCGTGGTCGACGCCGTCCTCAAACTGGACCTCGACCAGGACCTGAACCT CATCGGAGTCAAGAAGGTGCCCGGCGGCTCGATGGAGGTGCGTCGCCGCC TGCTCATGTGCCGCTTTCGTCCGCTTGCTAACATAAGGCAGGACTCTGTG CTCGTGGAGGGAGTGGCCTTCAAGAAGACCTTCTCCTACGCTGGCTTCGA GCAGCAGCCCAAGAAGATCGTCAACCCTAAGATCATTGCGCTGAACCTTG AGCTCGAACTGAAGGCTGAGAAGGACAACGCCGAGGTGCGCCTGGAGACG GCGGAGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119426:2..460-

>mRNA_M-pyrifera_M_contig119426.4004.1 ID=mRNA_M-pyrifera_M_contig119426.4004.1|Name=mRNA_M-pyrifera_M_contig119426.4004.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig119426:2..460- (Macrocystis pyrifera P11B4 male)
AAGAGTGAGACGTACGCACTTTCATTCCTTGCGCTGCCGCGTACTGGCGC
TGACCTGCTCCTCAGCGAGACCAGGGAGCTCCTCGTTCGCTGCGCTGCCA
CGGCGATGAACTCTAAGCTCATCGGAAGCCACAAGGACTTCTTTGCGCCC
CTCGTGGTCGACGCCGTCCTCAAACTGGACCTCGACCAGGACCTGAACCT
CATCGGAGTCAAGAAGGTGCCCGGCGGCTCGATGGAGAAGAGTGAGACGT
ACGCACTTTCATTCCTTGCGCTGCCGCGTACTGGCGCTGACCTGCTCCTC
AGCGAGACCAGGGAGCTCCTCGTTCGCTGCGCTGCCACGGCGATGAACTC
TAAGCTCATCGGAAGCCACAAGGACTTCTTTGCGCCCCTCGTGGTCGACG
CCGTCCTCAAACTGGACCTCGACCAGGACCTGAACCTCATCGGAGTCAAG
AAGGTGCCCGGCGGCTCGATGGAGGACTCTGTGCTCGTGGAGGGAGTGGC
CTTCAAGAAGACCTTCTCCTACGCTGGCTTCGAGCAGCAGCCCAAGAAGA
TCGTCAACCCTAAGATCATTGCGCTGAACCTTGAGCTCGAACTGAAGGCT
GAGAAGGACAACGCCGAGGTGCGCCTGGAGACGGCGGAGGACGACTCTGT
GCTCGTGGAGGGAGTGGCCTTCAAGAAGACCTTCTCCTACGCTGGCTTCG
AGCAGCAGCCCAAGAAGATCGTCAACCCTAAGATCATTGCGCTGAACCTT
GAGCTCGAACTGAAGGCTGAGAAGGACAACGCCGAGGTGCGCCTGGAGAC
GGCGGAGGAC
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