mRNA_M-pyrifera_M_contig119298.3975.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119298.3975.1
Unique NamemRNA_M-pyrifera_M_contig119298.3975.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119298.3975.1 vs. uniprot
Match: A0A7S4IBY3_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IBY3_9EUKA)

HSP 1 Score: 117 bits (293), Expect = 1.200e-28
Identity = 61/178 (34.27%), Postives = 106/178 (59.55%), Query Frame = 1
Query:    7 ETVEWINRMMLIAWPTMGPHISNIIMEKSVDALEANKPMMVSRMCLEGVTMGMVPPILSDVIVYKSDANILDIECTINLDSQIAMEMAAYTKPARVPILVKEPQFKARSRVTAWLIPREPFLSQMRVSFLERPDIDVTVKPISVGPDVINLVPGLSGAIKDMFIGMFSDQWIHPKYLE 540
            E+ +W+N+ +   W T    I++ ++ ++    E NKP MV  + L+ V +G   P LS+VIV+    +    +    L S+++ME+ A     + P+LV++   K++ R+ AWLIP+ PF+S +++SF+  P ID+ VK I +GPDV++ +PGLS AIK M   +    +++P + E
Sbjct:   75 ESAKWMNKCIQNIWFTSEEFITSTVISEATTLFENNKPSMVHELSLKNVKIGRKCPTLSEVIVHDVAPDQFHFDAQFQLYSEMSMELEAKLGLTKFPVLVRDVFIKSQIRIHAWLIPQPPFISHVQISFVGEPVIDMIVKLIKIGPDVMS-IPGLSAAIKKMMCDIIHQLFVYPNFYE 251          
BLAST of mRNA_M-pyrifera_M_contig119298.3975.1 vs. uniprot
Match: A0A7S4MIX7_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MIX7_9EUKA)

HSP 1 Score: 117 bits (293), Expect = 6.460e-28
Identity = 61/178 (34.27%), Postives = 106/178 (59.55%), Query Frame = 1
Query:    7 ETVEWINRMMLIAWPTMGPHISNIIMEKSVDALEANKPMMVSRMCLEGVTMGMVPPILSDVIVYKSDANILDIECTINLDSQIAMEMAAYTKPARVPILVKEPQFKARSRVTAWLIPREPFLSQMRVSFLERPDIDVTVKPISVGPDVINLVPGLSGAIKDMFIGMFSDQWIHPKYLE 540
            E+ +W+N+ +   W T    I++ ++ ++    E NKP MV  + L+ V +G   P LS+VIV+    +    +    L S+++ME+ A     + P+LV++   K++ R+ AWLIP+ PF+S +++SF+  P ID+ VK I +GPDV++ +PGLS AIK M   +    +++P + E
Sbjct:   75 ESAKWMNKCIQNIWFTSEEFITSTVISEATTLFENNKPSMVHELSLKNVKIGRKCPTLSEVIVHDVAPDQFHFDAQFQLYSEMSMELEAKLGLTKFPVLVRDVFIKSQIRIHAWLIPQPPFISHVQISFVGEPVIDMIVKLIKIGPDVMS-IPGLSAAIKKMMCDIIHQLFVYPNFYE 251          
BLAST of mRNA_M-pyrifera_M_contig119298.3975.1 vs. uniprot
Match: A0A388L5W7_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L5W7_CHABU)

HSP 1 Score: 64.3 bits (155), Expect = 9.000e-9
Identity = 55/199 (27.64%), Postives = 91/199 (45.73%), Query Frame = 1
Query:    1 EVETVEWINRMMLIAWPT-MGPHISNIIMEKSVDALEANKPMMVSRMCLEGVTMGMVPPILSDVIVYKSDANILDIECTINLDSQIAMEMAAYTKPARVPILVKEPQFKARSRV------TAW---------------LIPREPFLSQMRVSFLERPDIDVTVKP-ISVGPDVINLVPGLSGAIKDMFIGMFSDQWIHP 528
            E ETV W+N +M   WP  +   + + ++      LE  KP  + +  L+ + +G  PP++  + V++            N D    +EM      A    +V E Q + R RV      TA+                +P  PF+ +MRV F+ERP++DV+VKP ++ G DV   +PG+S  +  +   +FS   + P
Sbjct:  140 ESETVVWLNVLMSRIWPMFLRDLVQDAVLPVMPFFLERFKPWTLRKAVLKSLKLGSSPPVVLQMRVFEEP----------NEDDHAVVEMVVEFLAA--DDMVAELQARVRKRVGLGVWATAYASDLHLEGKVLVGLKFLPGFPFIERMRVCFVERPNLDVSVKPLVNAGVDVTE-IPGISTYVDSIIDTLFSQALVKP 325          
BLAST of mRNA_M-pyrifera_M_contig119298.3975.1 vs. uniprot
Match: A0A060TC41_BLAAD (ARAD1D36784p n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060TC41_BLAAD)

HSP 1 Score: 62.8 bits (151), Expect = 3.180e-8
Identity = 47/187 (25.13%), Postives = 86/187 (45.99%), Query Frame = 1
Query:    1 EVETVEWINRMMLIAWPTMGPHISNIIMEKSVDALEANKPMMVSRMCLEGVTMGMVPPILSDVIVY---KSDANILD-----------------IECTINLDSQIAMEMAAYTKPARVPILVKEPQFKARSRVTAWLIPREPFLSQMRVSFLERPDIDVTVKPI---SVGPDVINLVPGLSGAIKDM 492
            + ET+EW+N  ++  W    P +S  ++  +   L    P  +  + L   T+G  PP +  V  +   + D  ++D                 ++  +N    +++ +        +PILV++  F    RV   ++   P +  + VSFLE P+ D  +KP+   + G D IN++PGL+G IK+M
Sbjct:  202 DTETLEWLNTFLVKFWLIYEPVLSATVIATANQVLVDATPGFIESLSLSTFTLGTKPPRVDHVRTFPKTQEDIAVMDWRFSFTPNDTEDLTARQLKSKVNPKVVLSVRIGKGVVSKSLPILVEDMSFSGFVRVRIKMMTSFPHIQTVDVSFLEPPEFDFVLKPVGGETFGFD-INVIPGLTGFIKEM 387          
BLAST of mRNA_M-pyrifera_M_contig119298.3975.1 vs. uniprot
Match: A0A8H3TVC9_9TREE (Uncharacterized protein n=1 Tax=Naganishia liquefaciens TaxID=104408 RepID=A0A8H3TVC9_9TREE)

HSP 1 Score: 60.5 bits (145), Expect = 2.000e-7
Identity = 49/185 (26.49%), Postives = 86/185 (46.49%), Query Frame = 1
Query:    1 EVETVEWINRMMLIAWPTMGPHISNIIMEKSVDALEANKPMM--VSRMCLEGVTMGMVPPILSDVIVYKS--DANIL----------DIE--------CTINLDSQIAMEMAAYTKPARVPILVKEPQFKARSRVTAWLIPREPFLSQMRVSFLERPDIDVTVKPISVGPDVINLVPGLSGAIKD 489
            E ET +WIN ++  AW    P +   ++   VD + AN P+   +  + +   T+G   P +  V  Y    D  ++          D+E          +N    + + +      A +PIL+++  F  + R+   L+   P +  ++VSF+E+PD D  +KP++  P  +N +PGLS  IKD
Sbjct:  293 ETETADWINNLLDRAWLIAEPLLGATVVAM-VDDILANSPLPPGLDSVRMTTFTLGNKAPKIDSVRTYPETPDDQVIMEWALSFTPNDVEDLTPRQARSKVNPKIALDVRIGKGVVSAGLPILLEDISFTGKMRIKLKLMTNFPHVQTVQVSFMEKPDFDYVLKPLT--PFDVNSIPGLSSFIKD 474          
BLAST of mRNA_M-pyrifera_M_contig119298.3975.1 vs. uniprot
Match: A0A1E1KTS8_9HELO (Probable transmembrane protein n=6 Tax=cellular organisms TaxID=131567 RepID=A0A1E1KTS8_9HELO)

HSP 1 Score: 57.0 bits (136), Expect = 3.090e-6
Identity = 45/184 (24.46%), Postives = 82/184 (44.57%), Query Frame = 1
Query:    1 EVETVEWINRMMLIAWPTMGPHISNIIMEKSVDALEANKPMMVSRMCLEGVTMGMVPPILSDVIVY-KSDANIL-------------------DIECTINLDSQIAMEMAAYTKPARVPILVKEPQFKARSRVTAWLIPREPFLSQMRVSFLERPDIDVTVKPIS---VGPDVINLVPGLSGAI 483
            + E++EWIN  ++  WP   P ++  I+      L  + P  +  + ++  T+G  PP +  V  Y K+D +++                    I+  +N    + + +        + ++V++  F    RV   L    P + ++ +SFLE+P ID + KPI    +G D IN +PGL   I
Sbjct:  243 DTESLEWINSFLVKFWPIFQPVLAETIINSVDQVLSTSTPAFLDSLRMKTFTLGNKPPRMEHVKTYPKADDDVVLMDWKFSFTPNDHADMTSRQIKNKVNPKIVLEIRIGKAMISKGLDVIVEDMAFSGLMRVKIKLQIPFPHVEKIEISFLEKPTIDYSCKPIGGEMLGFD-INFIPGLESFI 425          
BLAST of mRNA_M-pyrifera_M_contig119298.3975.1 vs. uniprot
Match: A0A5J4YSL8_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSL8_PORPP)

HSP 1 Score: 55.1 bits (131), Expect = 1.350e-5
Identity = 39/183 (21.31%), Postives = 89/183 (48.63%), Query Frame = 1
Query:    1 EVETVEWINRMMLIAWPTMGPHISNIIMEKSVDALEANKPMMVSRMCLEGVTMGMVPPILSDVIVYKSDAN----ILDIECTINLDSQIAMEMAAYTKPARVPIL-VKEPQFKARSRVTAWLIPREPFLSQMRVSFLERPDIDVTVKPISVGPDVINLVPGLSGAIKDMFIGMFSDQWIHPKY 534
            ++E+  W+NR++   W    P  + I++E     +  N P  V  + ++ + +G   P L  +  +++       +LD +    L S+    +A     A +P++ V++   + + R+   L         ++V+F+ERP ++++V+P+S+  D+ +L P LS  + +      S+  + P++
Sbjct:   62 QMESAAWLNRILAQLWLRQAPFFAAILLETLRAKISENPPPFVPDLFVQNLCLGNRAPQLDHLKTFRTSQEDKRLVLDADVDW-LTSKFEFRLATKWMTANIPLISVEKLNVRCKLRLVLELDDYTGEFHALKVAFVERPRVEMSVEPLSLSFDICSL-PALSNWVFNFISVTMSEALLWPRF 242          
BLAST of mRNA_M-pyrifera_M_contig119298.3975.1 vs. uniprot
Match: A0A6A5PJS3_LUPAL (Uncharacterized protein n=2 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5PJS3_LUPAL)

HSP 1 Score: 54.7 bits (130), Expect = 1.780e-5
Identity = 49/190 (25.79%), Postives = 86/190 (45.26%), Query Frame = 1
Query:    1 EVETVEWINRMMLIAWPTMGPHIS--NIIMEKSVDALEANKPMMVSRMCLEGVTMGMVPPILSDV-IVYKSDANILDIECTINLDSQIAMEMAAYTKPAR-------VPILVKEPQFKARSRVTAWLIPREPFLSQMRVSFLERPDIDVTVKPISV-GPDVINLVPGLSGAIKDMFIGMFSDQWIHPKYL 537
            + ETV W+N  +   WP     I+  NI++      LE  KP       ++ + +G  PP+++++ ++ KS+ + L +E  +N  +   M      K  +         + +     + +  V    I   PF+S++RV F+E P   +TVKPI   G DV  L PG++G +  +    F    + P  L
Sbjct:   71 DFETVRWLNHAIKNIWPICMEQIASQNILLPIIPWFLEKYKPWTAKEAVVQHLYLGKNPPLITEMRVLRKSNDDHLVLELGMNFLTADDMSAILSVKLRKRLGFGMTAKLHITGMHVEGKVLVGVKFIQARPFISRVRVCFVEPPYFQMTVKPIFTHGLDVTEL-PGIAGWLDKILSIAFEQTLVEPNML 259          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119298.3975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A7S4IBY3_9EUKA1.200e-2834.27Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4MIX7_9EUKA6.460e-2834.27Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A388L5W7_CHABU9.000e-927.64Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A060TC41_BLAAD3.180e-825.13ARAD1D36784p n=1 Tax=Blastobotrys adeninivorans Ta... [more]
A0A8H3TVC9_9TREE2.000e-726.49Uncharacterized protein n=1 Tax=Naganishia liquefa... [more]
A0A1E1KTS8_9HELO3.090e-624.46Probable transmembrane protein n=6 Tax=cellular or... [more]
A0A5J4YSL8_PORPP1.350e-521.31Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A6A5PJS3_LUPAL1.780e-525.79Uncharacterized protein n=2 Tax=Lupinus albus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119298contigM-pyrifera_M_contig119298:5..544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size540
Cds size510
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815712.465204-UTR-M-pyrifera_M_contig119298:4..341622815712.465204-UTR-M-pyrifera_M_contig119298:4..34Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119298 5..34 +
1692277534.1954327-UTR-M-pyrifera_M_contig119298:4..341692277534.1954327-UTR-M-pyrifera_M_contig119298:4..34Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119298 5..34 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815712.4811635-CDS-M-pyrifera_M_contig119298:34..5441622815712.4811635-CDS-M-pyrifera_M_contig119298:34..544Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119298 35..544 +
1692277534.2036867-CDS-M-pyrifera_M_contig119298:34..5441692277534.2036867-CDS-M-pyrifera_M_contig119298:34..544Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119298 35..544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119298.3975.1prot_M-pyrifera_M_contig119298.3975.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119298 35..544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119298.3975.1

>prot_M-pyrifera_M_contig119298.3975.1 ID=prot_M-pyrifera_M_contig119298.3975.1|Name=mRNA_M-pyrifera_M_contig119298.3975.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp
MMLIAWPTMGPHISNIIMEKSVDALEANKPMMVSRMCLEGVTMGMVPPIL
SDVIVYKSDANILDIECTINLDSQIAMEMAAYTKPARVPILVKEPQFKAR
SRVTAWLIPREPFLSQMRVSFLERPDIDVTVKPISVGPDVINLVPGLSGA
IKDMFIGMFSDQWIHPKYLE
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mRNA from alignment at M-pyrifera_M_contig119298:5..544+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119298.3975.1 ID=mRNA_M-pyrifera_M_contig119298.3975.1|Name=mRNA_M-pyrifera_M_contig119298.3975.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig119298:5..544+ (Macrocystis pyrifera P11B4 male)
GAGGTTGAGACCGTGGAGTGGATCAACCGCATGATGCTTATCGCCTGGCC CACGATGGGCCCTCACATTTCCAACATCATCATGGAGAAGAGTGTTGACG CTCTTGAGGCCAACAAGCCTATGATGGTCTCCCGCATGTGCCTGGAGGGC GTGACGATGGGCATGGTCCCTCCGATCCTCAGCGACGTCATCGTGTACAA GTCGGACGCCAACATCCTGGACATTGAGTGCACCATCAACCTCGACAGCC AGATTGCCATGGAAATGGCTGCCTACACGAAGCCCGCCCGCGTGCCCATC CTCGTGAAGGAGCCGCAGTTCAAGGCCCGTTCTAGAGTCACCGCCTGGCT CATCCCTCGCGAGCCTTTCCTCTCACAGATGCGCGTCTCGTTCCTCGAGC GCCCCGACATCGACGTCACCGTCAAGCCTATCTCGGTCGGCCCGGACGTG ATCAACCTCGTGCCCGGCCTCAGCGGTGCCATCAAGGACATGTTCATCGG CATGTTCAGCGACCAGTGGATTCACCCCAAGTACCTGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119298:5..544+

>mRNA_M-pyrifera_M_contig119298.3975.1 ID=mRNA_M-pyrifera_M_contig119298.3975.1|Name=mRNA_M-pyrifera_M_contig119298.3975.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1020bp|location=Sequence derived from alignment at M-pyrifera_M_contig119298:5..544+ (Macrocystis pyrifera P11B4 male)
ATGATGCTTATCGCCTGGCCCACGATGGGCCCTCACATTTCCAACATCAT
CATGGAGAAGAGTGTTGACGCTCTTGAGGCCAACAAGCCTATGATGGTCT
CCCGCATGTGCCTGGAGGGCGTGACGATGGGCATGGTCCCTCCGATCCTC
AGCGACGTCATCGTGTACAAGTCGGACGCCAACATCCTGGACATTGAGTG
CACCATCAACCTCGACAGCCAGATTGCCATGGAAATGGCTGCCTACACGA
AGCCCGCCCGCGTGCCCATCCTCGTGAAGGAGCCGCAGTTCAAGGCCCGT
TCTAGAGTCACCGCCTGGCTCATCCCTCGCGAGCCTTTCCTCTCACAGAT
GCGCGTCTCGTTCCTCGAGCGCCCCGACATCGACGTCACCGTCAAGCCTA
TCTCGGTCGGCCCGGACGTGATCAACCTCGTGCCCGGCCTCAGCGGTGCC
ATCAAGGACATGTTCATCGGCATGTTCAGCGACCAGTGGATTCACCCCAA
GTACCTGGAAATGATGCTTATCGCCTGGCCCACGATGGGCCCTCACATTT
CCAACATCATCATGGAGAAGAGTGTTGACGCTCTTGAGGCCAACAAGCCT
ATGATGGTCTCCCGCATGTGCCTGGAGGGCGTGACGATGGGCATGGTCCC
TCCGATCCTCAGCGACGTCATCGTGTACAAGTCGGACGCCAACATCCTGG
ACATTGAGTGCACCATCAACCTCGACAGCCAGATTGCCATGGAAATGGCT
GCCTACACGAAGCCCGCCCGCGTGCCCATCCTCGTGAAGGAGCCGCAGTT
CAAGGCCCGTTCTAGAGTCACCGCCTGGCTCATCCCTCGCGAGCCTTTCC
TCTCACAGATGCGCGTCTCGTTCCTCGAGCGCCCCGACATCGACGTCACC
GTCAAGCCTATCTCGGTCGGCCCGGACGTGATCAACCTCGTGCCCGGCCT
CAGCGGTGCCATCAAGGACATGTTCATCGGCATGTTCAGCGACCAGTGGA
TTCACCCCAAGTACCTGGAA
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