mRNA_M-pyrifera_M_contig119176.3949.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119176.3949.1
Unique NamemRNA_M-pyrifera_M_contig119176.3949.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119176.3949.1 vs. uniprot
Match: A0A5A8CUI3_CAFRO (Sphingomyelin phosphodiesterase n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CUI3_CAFRO)

HSP 1 Score: 108 bits (270), Expect = 7.730e-25
Identity = 52/138 (37.68%), Postives = 73/138 (52.90%), Query Frame = 1
Query:    1 LCSGIVKVFGPEFTYLAGQIALEPERDCKAMGFCTDGGVGDSAAIEQFIASLSPNGANGASEQVEEQQKEWKREDVYRVVHLTDVHWDQMYEVGAKSDCGEPLCCRSVQGKGENKSDSCGYWGDQFGDTNNATVDLIM 414
            LC GI  +F PE  ++A   AL+PERDC A+G C    + ++  +    A   P+    A   +             +V+ +TD+HWD  Y +GA++DCGEP CCR VQG       +CGYWGD  GDT    VD ++
Sbjct:  102 LCRGITSLFTPEILFIAAHAALDPERDCTALGLCNASTLAEAPILR--AAPSFPSAPREAGTTI-------------KVMQITDLHWDPNYTMGARTDCGEPDCCRGVQGMATGSETACGYWGDHAGDTPTVMVDSML 224          
BLAST of mRNA_M-pyrifera_M_contig119176.3949.1 vs. uniprot
Match: A0A812J149_9DINO (Hydroxymethylbilane synthase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812J149_9DINO)

HSP 1 Score: 108 bits (270), Expect = 9.450e-25
Identity = 52/138 (37.68%), Postives = 73/138 (52.90%), Query Frame = 1
Query:    1 LCSGIVKVFGPEFTYLAGQIALEPERDCKAMGFCTDGGVGDSAAIEQFIASLSPNGANGASEQVEEQQKEWKREDVYRVVHLTDVHWDQMYEVGAKSDCGEPLCCRSVQGKGENKSDSCGYWGDQFGDTNNATVDLIM 414
            LC GI  +F PE  ++A   AL+PERDC A+G C    + ++  +    A   P+    A   +             +V+ +TD+HWD  Y +GA++DCGEP CCR VQG       +CGYWGD  GDT    VD ++
Sbjct: 1012 LCRGITSLFTPEILFIAAHAALDPERDCTALGLCNASTLAEAPILR--AAPSFPSAPREAGTTI-------------KVMQITDLHWDPNYTMGARTDCGEPDCCRGVQGMATGSETACGYWGDHAGDTPTVMVDSML 1134          
BLAST of mRNA_M-pyrifera_M_contig119176.3949.1 vs. uniprot
Match: UPI000C786C09 (sphingomyelin phosphodiesterase-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C786C09)

HSP 1 Score: 80.5 bits (197), Expect = 5.820e-15
Identity = 44/125 (35.20%), Postives = 62/125 (49.60%), Query Frame = 1
Query:    1 LCSGIVKVFGPEFTYLAGQIALEPERDCKAMGFCTDGGVGDSAAIE-QFIASLSPNGANGASEQVEEQQKEWKREDVYRVVHLTDVHWDQMYEVGAKSDCGEPLCCRSVQGKGENKSDSCGYWGD 372
            +CSG+V+ FGPE   +   I+  PE  C   GF       +    + ++   L P      SE       E    + +RV+HL+D HWD  Y+ G+ ++CGEPLCCRS      +  D  GYWGD
Sbjct:  158 ICSGLVESFGPEIYTVVSNISQSPEEMC---GFMFGEACNNPYNPKHEWTILLPPVSKPNYSE------PELSTGETFRVLHLSDTHWDPFYQEGSNANCGEPLCCRSTSSAVSDPEDKAGYWGD 273          
BLAST of mRNA_M-pyrifera_M_contig119176.3949.1 vs. uniprot
Match: UPI000C76CFB4 (uncharacterized protein LOC111711040 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C76CFB4)

HSP 1 Score: 80.5 bits (197), Expect = 6.390e-15
Identity = 44/125 (35.20%), Postives = 62/125 (49.60%), Query Frame = 1
Query:    1 LCSGIVKVFGPEFTYLAGQIALEPERDCKAMGFCTDGGVGDSAAIE-QFIASLSPNGANGASEQVEEQQKEWKREDVYRVVHLTDVHWDQMYEVGAKSDCGEPLCCRSVQGKGENKSDSCGYWGD 372
            +CSG+V+ FGPE   +   I+  PE  C   GF       +    + ++   L P      SE       E    + +RV+HL+D HWD  Y+ G+ ++CGEPLCCRS      +  D  GYWGD
Sbjct:  922 ICSGLVESFGPEIYTVVSNISQSPEEMC---GFMFGEACNNPYNPKHEWTILLPPVSKPNYSE------PELSTGETFRVLHLSDTHWDPFYQEGSNANCGEPLCCRSTSSAVSDPEDKAGYWGD 1037          
BLAST of mRNA_M-pyrifera_M_contig119176.3949.1 vs. uniprot
Match: UPI000C2043A7 (sphingomyelin phosphodiesterase-like isoform X1 n=4 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C2043A7)

HSP 1 Score: 75.1 bits (183), Expect = 3.470e-13
Identity = 46/139 (33.09%), Postives = 67/139 (48.20%), Query Frame = 1
Query:    1 LCSGIVKVFGPEFTYLAGQIALEPERDCKAMGFCTDGGVGDSAAIEQFIASLSPNGANGASEQVEEQQKEWKREDVYRVVHLTDVHWDQMYEVGAKSDCGEPLCCRSVQGKGENKSDSCGYWGD-QFGDTNNATVDLIM 414
            +C GI + F PE  Y+ GQ+ + PE  C    F    G GD          + P         + EQ+    +   ++V+HL+D H+D  Y  G+ +DC EPLCCR   G   +K  + G WGD +  DT   TVD ++
Sbjct:  188 VCEGITEQFAPEVIYVLGQVKIGPEEICS---FVIGDGCGDVYNPYHDWEVIFPPVPKPT---LIEQKIPEIQAPTFKVLHLSDTHYDPYYLEGSNADCNEPLCCRLTNGPAASKEQAAGKWGDYRKCDTPKRTVDNLL 320          
BLAST of mRNA_M-pyrifera_M_contig119176.3949.1 vs. uniprot
Match: A0A6A4K536_APOLU (Sphingomyelin phosphodiesterase n=1 Tax=Apolygus lucorum TaxID=248454 RepID=A0A6A4K536_APOLU)

HSP 1 Score: 72.4 bits (176), Expect = 3.930e-12
Identity = 41/139 (29.50%), Postives = 66/139 (47.48%), Query Frame = 1
Query:    1 LCSGIVKVFGPEFTYLAGQIALEPERDCKAMGFCTDGGVGDSAAIEQFIASLSPNGANGASEQVEEQQKEWKREDVYRVVHLTDVHWDQMYEVGAKSDCGEPLCCRSVQGKGENKSDSCGYWGD-QFGDTNNATVDLIM 414
            +C GI ++FG EF Y+  ++ L P   C    F      GD        + + P       +Q+   +        ++V+H++D H+D  Y+ G  ++C EPLCCR   G   N + + G WGD +  DT   TVD ++
Sbjct:  181 VCEGITEIFGGEFVYVLRRVTLSPNEICS---FVIGDACGDDDVPAHEWSVVFPPVPKPQPKQILAPKD---GASTFKVLHISDTHYDPYYQEGTNAECNEPLCCRLTNGPAPNAAAAAGRWGDYRKCDTPKRTVDNML 313          
BLAST of mRNA_M-pyrifera_M_contig119176.3949.1 vs. uniprot
Match: A0A6V7II33_9HYME (Uncharacterized protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7II33_9HYME)

HSP 1 Score: 68.2 bits (165), Expect = 5.480e-12
Identity = 41/133 (30.83%), Postives = 62/133 (46.62%), Query Frame = 1
Query:   31 PEFTYLAGQIALEPERDCKAM-----GFCTDGGVGDSAAIEQFIASLSPNGANGASEQVEEQQKEWKREDVYRVVHLTDVHWDQMYEVGAKSDCGEPLCCRSVQGKGENKSDSCGYWGDQFGDTNNATVDLIM 414
            PEF Y+  +  + P++ C  M     GF           I  +   L P      S+ V            ++V+HL+D H+D +Y+ G+ ++CGEPLCCR   GK  N  D+ G WG    DT   T+D ++
Sbjct:    1 PEFVYVLRRAEMYPKQICSFMYGEVCGFTYSN-------IHDWNIPLLPTKKPPVSQPVAPNADA----KTFKVLHLSDTHFDPLYQEGSNANCGEPLCCRPNSGKPSNPGDAAGKWGAYTCDTPKRTIDHML 122          
BLAST of mRNA_M-pyrifera_M_contig119176.3949.1 vs. uniprot
Match: D6WVW3_TRICA (Sphingomyelin phosphodiesterase n=8 Tax=Tribolium TaxID=7069 RepID=D6WVW3_TRICA)

HSP 1 Score: 71.2 bits (173), Expect = 9.910e-12
Identity = 42/139 (30.22%), Postives = 67/139 (48.20%), Query Frame = 1
Query:    1 LCSGIVKVFGPEFTYLAGQIALEPERDCKAMGFCTDGGVGDSAAIEQFIASLSPNGANGASEQVEEQQKEWKREDVYRVVHLTDVHWDQMYEVGAKSDCGEPLCCRSVQGKGENKSDSCGYWGD-QFGDTNNATVDLIM 414
            +C GI ++F  E  Y+ G++ + P+  C  +     G V +     + +    P  A      + EQ+        ++V+HL+D H+D  Y  G+ +DC EPLCCR   G    K  + G WGD +  DT   TVD ++
Sbjct:  150 VCEGITELFAGEVIYVLGKVTIGPDEVCSFVIGDACGDVYNPLHEWEVMFPPVPKPA------IVEQKIPEINAPTFKVLHLSDTHYDPYYHEGSNADCSEPLCCRLTNGLASTKEQAAGKWGDYRKCDTPKITVDNML 282          
BLAST of mRNA_M-pyrifera_M_contig119176.3949.1 vs. uniprot
Match: A0A6L5CRG0_9INSE (Sphingomyelin phosphodiesterase n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5CRG0_9INSE)

HSP 1 Score: 71.2 bits (173), Expect = 9.980e-12
Identity = 45/140 (32.14%), Postives = 67/140 (47.86%), Query Frame = 1
Query:    1 LCSGIVKVFGPEFTYLAGQIALEPERDCKAMGFCTDGGVGDS-AAIEQFIASLSPNGANGASEQVEEQQKEWKREDVYRVVHLTDVHWDQMYEVGAKSDCGEPLCCRSVQGKGENKSDSCGYWGD-QFGDTNNATVDLIM 414
            +C GI ++FG E TY+  ++ L PE  C   GF      GD      ++  +  P         V   +        ++V+HL+D H+D  Y  GA +DC EPLCCR   G   + + + G WGD +  DT   TVD ++
Sbjct:  193 VCDGITELFGGEVTYVLQRLKLSPEEIC---GFVIGDACGDIYTPHHEWQLTFPPV----PKPPVIPMKPPKPGSPTFKVLHLSDTHYDPYYHEGANADCAEPLCCRLTNGPPASAATAAGRWGDYRKCDTPKRTVDSML 325          
BLAST of mRNA_M-pyrifera_M_contig119176.3949.1 vs. uniprot
Match: A0A834IPD3_RHYFE (Sphingomyelin phosphodiesterase n=2 Tax=Rhynchophorus ferrugineus TaxID=354439 RepID=A0A834IPD3_RHYFE)

HSP 1 Score: 71.2 bits (173), Expect = 1.000e-11
Identity = 42/144 (29.17%), Postives = 70/144 (48.61%), Query Frame = 1
Query:    1 LCSGIVKVFGPEFTYLAGQIALEPERDCKAMGFCTDGGVGDSAA-----IEQFIASLSPNGANGASEQVEEQQKEWKREDVYRVVHLTDVHWDQMYEVGAKSDCGEPLCCRSVQGKGENKSDSCGYWGD-QFGDTNNATVDLIM 414
            +C GI ++F  E  ++ G++ + P+  C  +       +GD+         ++  +  P      +EQ   +Q        ++V+HL+D H+D  Y  GA +DC EPLCCR   G   +K  + G WGD +  DT   TVD ++
Sbjct:  224 VCEGITELFASEVIHVLGKVNIGPDEICSFV-------IGDACGDVYNPYHEWEVAFPPVPKPTPTEQEIPEQSA----PTFKVLHLSDTHYDPYYMEGANADCSEPLCCRLTNGPASSKESAAGKWGDYRKCDTPKITVDNML 356          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119176.3949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CUI3_CAFRO7.730e-2537.68Sphingomyelin phosphodiesterase n=4 Tax=Cafeteria ... [more]
A0A812J149_9DINO9.450e-2537.68Hydroxymethylbilane synthase n=1 Tax=Symbiodinium ... [more]
UPI000C786C095.820e-1535.20sphingomyelin phosphodiesterase-like n=1 Tax=Euryt... [more]
UPI000C76CFB46.390e-1535.20uncharacterized protein LOC111711040 n=1 Tax=Euryt... [more]
UPI000C2043A73.470e-1333.09sphingomyelin phosphodiesterase-like isoform X1 n=... [more]
A0A6A4K536_APOLU3.930e-1229.50Sphingomyelin phosphodiesterase n=1 Tax=Apolygus l... [more]
A0A6V7II33_9HYME5.480e-1230.83Uncharacterized protein (Fragment) n=1 Tax=Bracon ... [more]
D6WVW3_TRICA9.910e-1230.22Sphingomyelin phosphodiesterase n=8 Tax=Tribolium ... [more]
A0A6L5CRG0_9INSE9.980e-1232.14Sphingomyelin phosphodiesterase n=1 Tax=Ephemera d... [more]
A0A834IPD3_RHYFE1.000e-1129.17Sphingomyelin phosphodiesterase n=2 Tax=Rhynchopho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119176contigM-pyrifera_M_contig119176:101..514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score75.1
Seed ortholog evalue2.9e-11
Seed eggNOG ortholog7070.TC005858-PA
KEGG rclassRC00017,RC00425
KEGG koko:K12350
KEGG ReactionR02541
KEGG Pathwayko00600,ko01100,ko04071,ko04142,ko04217,map00600,map01100,map04071,map04142,map04217
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Converts sphingomyelin to ceramide
EggNOG OGs38DAR@33154,3BDX1@33208,3CR57@33213,3SHD6@50557,41WND@6656,KOG3770@1,KOG3770@2759
EC3.1.4.12
COG Functional cat.I
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815711.1267378-CDS-M-pyrifera_M_contig119176:100..5141622815711.1267378-CDS-M-pyrifera_M_contig119176:100..514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119176 101..514 +
1692277533.5625808-CDS-M-pyrifera_M_contig119176:100..5141692277533.5625808-CDS-M-pyrifera_M_contig119176:100..514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119176 101..514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119176.3949.1prot_M-pyrifera_M_contig119176.3949.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119176 101..514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119176.3949.1

>prot_M-pyrifera_M_contig119176.3949.1 ID=prot_M-pyrifera_M_contig119176.3949.1|Name=mRNA_M-pyrifera_M_contig119176.3949.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
LCSGIVKVFGPEFTYLAGQIALEPERDCKAMGFCTDGGVGDSAAIEQFIA
SLSPNGANGASEQVEEQQKEWKREDVYRVVHLTDVHWDQMYEVGAKSDCG
EPLCCRSVQGKGENKSDSCGYWGDQFGDTNNATVDLIM
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mRNA from alignment at M-pyrifera_M_contig119176:101..514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119176.3949.1 ID=mRNA_M-pyrifera_M_contig119176.3949.1|Name=mRNA_M-pyrifera_M_contig119176.3949.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig119176:101..514+ (Macrocystis pyrifera P11B4 male)
TTGTGTTCTGGGATTGTCAAGGTGTTTGGACCAGAATTCACATACCTTGC TGGACAAATTGCTTTGGAACCAGAGAGAGATTGCAAAGCGATGGGATTTT GTACCGATGGTGGAGTTGGAGATTCCGCAGCTATTGAGCAATTCATTGCA TCCTTGTCACCAAATGGAGCAAATGGAGCAAGTGAGCAAGTCGAAGAGCA GCAGAAAGAGTGGAAGCGCGAGGATGTGTACCGTGTGGTTCATCTCACAG ACGTGCACTGGGATCAGATGTATGAAGTGGGAGCAAAGAGTGATTGTGGA GAGCCACTTTGTTGCCGGTCCGTGCAAGGAAAAGGAGAAAACAAGAGCGA TAGTTGTGGATATTGGGGTGATCAATTTGGAGATACGAACAATGCCACAG TGGACTTGATTATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119176:101..514+

>mRNA_M-pyrifera_M_contig119176.3949.1 ID=mRNA_M-pyrifera_M_contig119176.3949.1|Name=mRNA_M-pyrifera_M_contig119176.3949.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig119176:101..514+ (Macrocystis pyrifera P11B4 male)
TTGTGTTCTGGGATTGTCAAGGTGTTTGGACCAGAATTCACATACCTTGC
TGGACAAATTGCTTTGGAACCAGAGAGAGATTGCAAAGCGATGGGATTTT
GTACCGATGGTGGAGTTGGAGATTCCGCAGCTATTGAGCAATTCATTGCA
TCCTTGTCACCAAATGGAGCAAATGGAGCAAGTGAGCAAGTCGAAGAGCA
GCAGAAAGAGTGGAAGCGCGAGGATGTGTACCGTGTGGTTCATCTCACAG
ACGTGCACTGGGATCAGATGTATGAAGTGGGAGCAAAGAGTGATTGTGGA
GAGCCACTTTGTTGCCGGTCCGTGCAAGGAAAAGGAGAAAACAAGAGCGA
TAGTTGTGGATATTGGGGTGATCAATTTGGAGATACGAACAATGCCACAG
TGGACTTGATTATGTTGTGTTCTGGGATTGTCAAGGTGTTTGGACCAGAA
TTCACATACCTTGCTGGACAAATTGCTTTGGAACCAGAGAGAGATTGCAA
AGCGATGGGATTTTGTACCGATGGTGGAGTTGGAGATTCCGCAGCTATTG
AGCAATTCATTGCATCCTTGTCACCAAATGGAGCAAATGGAGCAAGTGAG
CAAGTCGAAGAGCAGCAGAAAGAGTGGAAGCGCGAGGATGTGTACCGTGT
GGTTCATCTCACAGACGTGCACTGGGATCAGATGTATGAAGTGGGAGCAA
AGAGTGATTGTGGAGAGCCACTTTGTTGCCGGTCCGTGCAAGGAAAAGGA
GAAAACAAGAGCGATAGTTGTGGATATTGGGGTGATCAATTTGGAGATAC
GAACAATGCCACAGTGGACTTGATTATG
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