mRNA_M-pyrifera_M_contig118578.3836.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig118578.3836.1 vs. uniprot
Match: UPI001C3FC7AC (DNA mismatch repair protein Msh6 n=1 Tax=Callorhinchus milii TaxID=7868 RepID=UPI001C3FC7AC) HSP 1 Score: 199 bits (506), Expect = 2.270e-60 Identity = 105/193 (54.40%), Postives = 140/193 (72.54%), Query Frame = 1
Query: 1 LSLADWSSSGDTGIAEDLCRPQF-VPE---ASVLEIEGGRHPCVTLALRDAGSSSDFVPNDIRIG--------GRDSDALASCVLLTGPNMGGKSTLLRQACVTTLLAHLGVFVPAKSCRLSLTDRIFTRAGASDRILAGQSTFFVELAETSTILKFATKHSLVILDELGRGTSTFDGSAIASAVTRHLADHV 543
+SLA +S GD +CRP +PE S LE+ G RHPCV+ DF+PND+ +G G D A ASC+L+TGPNMGGKSTL+RQA + ++A LG +VPA+SC+L+ DR+FTR GASDRI++G+STFFVEL+ETS+IL+ AT+HSLV+LDELGRGT+T+DG+AIASAV + LA+++
Sbjct: 14 ISLAHYSQGGDG----PMCRPVVCLPEEDACSFLELRGSRHPCVSKTF----FGDDFIPNDLVVGRGESEDAEGSDGAAQASCMLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAESCKLTPVDRVFTRLGASDRIMSGESTFFVELSETSSILQHATQHSLVLLDELGRGTATYDGTAIASAVVKELAENI 198
BLAST of mRNA_M-pyrifera_M_contig118578.3836.1 vs. uniprot
Match: A0A7K8XS96_9PICI (MSH6 protein (Fragment) n=7 Tax=Piciformes TaxID=9219 RepID=A0A7K8XS96_9PICI) HSP 1 Score: 205 bits (522), Expect = 5.920e-58 Identity = 110/187 (58.82%), Postives = 141/187 (75.40%), Query Frame = 1
Query: 1 LSLADWSSSGDTGIAEDLCRPQFV-PEASV---LEIEGGRHPCVTLALRDAGSSSDFVPNDIRIGGRDSDAL--ASCVLLTGPNMGGKSTLLRQACVTTLLAHLGVFVPAKSCRLSLTDRIFTRAGASDRILAGQSTFFVELAETSTILKFATKHSLVILDELGRGTSTFDGSAIASAVTRHLADHV 543
+SLA++S GD G+ LCRP V P S LE++ RHPC+T DF+PNDI IG RD D ASCVL+TGPNMGGKSTL+RQA + ++A LG +VPA++CRL+ DR+FTR GASDRI++G+STFFVEL+ETS+IL+ ATKHSLV++DELGRGT+TFDG+AIASAV + LA+ +
Sbjct: 984 MSLANYSQDGD-GL---LCRPVIVLPVDSAPPFLELKNSRHPCITKTF----FGDDFIPNDIVIGSRDEDGSSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEACRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATKHSLVLVDELGRGTATFDGTAIASAVVKELAEQI 1162
BLAST of mRNA_M-pyrifera_M_contig118578.3836.1 vs. uniprot
Match: A0A1X2HZ46_9FUNG (Muts domain V-domain-containing protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2HZ46_9FUNG) HSP 1 Score: 204 bits (520), Expect = 8.320e-58 Identity = 108/176 (61.36%), Postives = 128/176 (72.73%), Query Frame = 1
Query: 22 SSGDTGIAEDLCRPQFVP-EASVLEIEGGRHPCVTLALRDAGSSSDFVPNDIRIGGRDSDALASCVLLTGPNMGGKSTLLRQACVTTLLAHLGVFVPAKSCRLSLTDRIFTRAGASDRILAGQSTFFVELAETSTILKFATKHSLVILDELGRGTSTFDGSAIASAVTRHLADHVG 546
S G T I E CRP+F E SVLE E RHPCV AG S+DF+PND+++G +D + +LTGPNMGGKSTLLRQ CV ++A LG +VPAKSCR++ DRI+TR GA+D I+AGQSTF VELAETS IL AT S+VILDELGRGTSTFDG AIA +V +LA HVG
Sbjct: 849 SEGSTKIGEPACRPEFTDQETSVLEFEELRHPCVV-----AGPSTDFIPNDVKLGDKDEPNIT---VLTGPNMGGKSTLLRQTCVAIIMAQLGGYVPAKSCRMTACDRIYTRIGANDNIMAGQSTFMVELAETSKILHEATPRSMVILDELGRGTSTFDGYAIAYSVLHYLATHVG 1016
BLAST of mRNA_M-pyrifera_M_contig118578.3836.1 vs. uniprot
Match: A0A8H7UCI3_9FUNG (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UCI3_9FUNG) HSP 1 Score: 192 bits (488), Expect = 9.350e-58 Identity = 101/166 (60.84%), Postives = 122/166 (73.49%), Query Frame = 1
Query: 52 LCRPQFVP-EASVLEIEGGRHPCVTLALRDAGSSSDFVPNDIRIGGRDSDALASCVLLTGPNMGGKSTLLRQACVTTLLAHLGVFVPAKSCRLSLTDRIFTRAGASDRILAGQSTFFVELAETSTILKFATKHSLVILDELGRGTSTFDGSAIASAVTRHLADHVG 546
+CRP+FV E SVLE+ RHPC+ AG ++DF+PND +GG + ++LTGPNMGGKSTLLRQ CV ++A LG +VPA CR++ DRI+TR GA+D ILAGQSTF VEL+ETS IL AT HS+VILDELGRGTSTFDG AIA AV +LA HVG
Sbjct: 2 VCRPEFVDSEKSVLELHDLRHPCIA-----AGVATDFIPNDTYLGGERPNI----IVLTGPNMGGKSTLLRQTCVAIIMAQLGCYVPASKCRMTPFDRIYTRIGANDNILAGQSTFMVELSETSKILHEATPHSMVILDELGRGTSTFDGYAIAYAVLHYLATHVG 158
BLAST of mRNA_M-pyrifera_M_contig118578.3836.1 vs. uniprot
Match: A0A8C5MKP8_9ANUR (DNA mismatch repair protein n=2 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5MKP8_9ANUR) HSP 1 Score: 203 bits (517), Expect = 2.790e-57 Identity = 105/187 (56.15%), Postives = 138/187 (73.80%), Query Frame = 1
Query: 1 LSLADWSSSGDTGIAEDLCRPQFV---PEASVLEIEGGRHPCVTLALRDAGSSSDFVPNDIRIGGRDSDAL---ASCVLLTGPNMGGKSTLLRQACVTTLLAHLGVFVPAKSCRLSLTDRIFTRAGASDRILAGQSTFFVELAETSTILKFATKHSLVILDELGRGTSTFDGSAIASAVTRHLADHV 543
+ L+ +S GD + +CRP+FV A LE++G RHPC+T DF+PNDI IG R D A CVL+TGPNMGGKSTLLRQA + ++A LG +VPA++CRL+ DR+FTR GASDRI++G+STFFVEL+ETS+IL+ AT+HSLV+LDELGRGT+TFDG+AIASAV + L++ +
Sbjct: 984 MCLSQYSKGGD----DPVCRPEFVLPGDTAPFLELKGSRHPCITKTF----FGDDFIPNDILIGCRGEDCSNSEAHCVLVTGPNMGGKSTLLRQAGLLVVMAQLGCYVPAETCRLTPVDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLLDELGRGTATFDGTAIASAVVKELSESI 1162
BLAST of mRNA_M-pyrifera_M_contig118578.3836.1 vs. uniprot
Match: A0A2D4KGH4_9SAUR (DNA_MISMATCH_REPAIR_2 domain-containing protein (Fragment) n=1 Tax=Micrurus paraensis TaxID=1970185 RepID=A0A2D4KGH4_9SAUR) HSP 1 Score: 195 bits (495), Expect = 4.000e-57 Identity = 103/186 (55.38%), Postives = 140/186 (75.27%), Query Frame = 1
Query: 1 LSLADWSSSGDTGIAEDLCRPQFV-PE--ASVLEIEGGRHPCVTLALRDAGSSSDFVPNDIRIGGRD--SDALASCVLLTGPNMGGKSTLLRQACVTTLLAHLGVFVPAKSCRLSLTDRIFTRAGASDRILAGQSTFFVELAETSTILKFATKHSLVILDELGRGTSTFDGSAIASAVTRHLADHV 543
L LA +S D LCRP+ + PE + LE++ RHPC+T DF+PNDI IG D +++ A+CVL+TGPNMGGKSTL+RQA + ++A LG +VPA+SCRL+ DR+FTR GASDRI++G+STFFVEL+ETS+IL+ AT+HSLV++DELGRGT+TFDG+AIASAV + L++++
Sbjct: 169 LCLACYSQGCDG----PLCRPEILLPENTSPFLELKSSRHPCITKTY----FGDDFIPNDIIIGLEDEKTNSRATCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAESCRLTPVDRVFTRLGASDRIMSGESTFFVELSETSSILQHATQHSLVLMDELGRGTATFDGTAIASAVVKELSENI 346
BLAST of mRNA_M-pyrifera_M_contig118578.3836.1 vs. uniprot
Match: A0A852CPY8_9PICI (MSH6 protein (Fragment) n=1 Tax=Ramphastos sulfuratus TaxID=322582 RepID=A0A852CPY8_9PICI) HSP 1 Score: 202 bits (515), Expect = 5.170e-57 Identity = 108/187 (57.75%), Postives = 138/187 (73.80%), Query Frame = 1
Query: 1 LSLADWSSSGDTGIAEDLCRPQFV-PEASV---LEIEGGRHPCVTLALRDAGSSSDFVPNDIRIGGRDSDAL--ASCVLLTGPNMGGKSTLLRQACVTTLLAHLGVFVPAKSCRLSLTDRIFTRAGASDRILAGQSTFFVELAETSTILKFATKHSLVILDELGRGTSTFDGSAIASAVTRHLADHV 543
+SLA++S GD LCRP V P S LE++ RHPC+T DF+PNDI IG D D ASCVL+TGPNMGGKSTL+RQA + ++A LG +VPA++CRL+ DR+FTR GASDRI++G+STFFVEL+ETS+IL+ ATKHSLV++DELGRGT+TFDG+AIASAV + LA+ +
Sbjct: 997 MSLANYSQDGDG----PLCRPVIVLPVDSAPPFLELKNSRHPCITKTF----FGDDFIPNDIVIGSADEDGSSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEACRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATKHSLVLVDELGRGTATFDGTAIASAVMKELAEQI 1175
BLAST of mRNA_M-pyrifera_M_contig118578.3836.1 vs. uniprot
Match: A0A7L2Z5B2_JACJC (MSH6 protein (Fragment) n=6 Tax=Neognathae TaxID=8825 RepID=A0A7L2Z5B2_JACJC) HSP 1 Score: 202 bits (514), Expect = 7.070e-57 Identity = 106/187 (56.68%), Postives = 141/187 (75.40%), Query Frame = 1
Query: 1 LSLADWSSSGDTGIAEDLCRPQFV-PEASV---LEIEGGRHPCVTLALRDAGSSSDFVPNDIRIGGRDSDAL--ASCVLLTGPNMGGKSTLLRQACVTTLLAHLGVFVPAKSCRLSLTDRIFTRAGASDRILAGQSTFFVELAETSTILKFATKHSLVILDELGRGTSTFDGSAIASAVTRHLADHV 543
+SLA++S GD LCRP + P S LE++ RHPC+T DF+PNDI IG +D D+ ASCVL+TGPNMGGKSTL+RQA + ++A LG +VPA++CRL+ DR+FTR GASDRI++G+STFFVEL+ETS+IL+ AT+HSLV++DELGRGT+TFDG+AIASAV + LA+++
Sbjct: 980 MSLANYSQDGDG----PLCRPVILLPVDSAPPFLELKNSRHPCITKTF----FGDDFIPNDIVIGSKDDDSQSDASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEACRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVKELAENI 1158
BLAST of mRNA_M-pyrifera_M_contig118578.3836.1 vs. uniprot
Match: MSH6_CHICK (DNA mismatch repair protein Msh6 n=21 Tax=Neognathae TaxID=8825 RepID=MSH6_CHICK) HSP 1 Score: 202 bits (513), Expect = 9.720e-57 Identity = 107/187 (57.22%), Postives = 140/187 (74.87%), Query Frame = 1
Query: 1 LSLADWSSSGDTGIAEDLCRPQFV-PEASV---LEIEGGRHPCVTLALRDAGSSSDFVPNDIRIGGRDSD--ALASCVLLTGPNMGGKSTLLRQACVTTLLAHLGVFVPAKSCRLSLTDRIFTRAGASDRILAGQSTFFVELAETSTILKFATKHSLVILDELGRGTSTFDGSAIASAVTRHLADHV 543
+SLA++S GD LCRP + P S LE++ RHPC+T DF+PNDI IG +D D + ASCVL+TGPNMGGKSTL+RQA + ++A LG +VPA+ CRL+ DR+FTR GASDRI++G+STFFVEL+ETS+IL+ AT+HSLV++DELGRGT+TFDG+AIASAV R LA+++
Sbjct: 1038 MSLANYSQDGDG----PLCRPVILLPVDSAPPFLELKNARHPCITKTF----FGDDFIPNDIVIGSKDEDGGSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVRELAENI 1216
BLAST of mRNA_M-pyrifera_M_contig118578.3836.1 vs. uniprot
Match: A0A8C2SNQ3_COTJA (DNA mismatch repair protein n=1 Tax=Coturnix japonica TaxID=93934 RepID=A0A8C2SNQ3_COTJA) HSP 1 Score: 202 bits (513), Expect = 9.730e-57 Identity = 106/187 (56.68%), Postives = 137/187 (73.26%), Query Frame = 1
Query: 1 LSLADWSSSGDTGIAEDLCRPQFVPEAS----VLEIEGGRHPCVTLALRDAGSSSDFVPNDIRIGGRDSDAL--ASCVLLTGPNMGGKSTLLRQACVTTLLAHLGVFVPAKSCRLSLTDRIFTRAGASDRILAGQSTFFVELAETSTILKFATKHSLVILDELGRGTSTFDGSAIASAVTRHLADHV 543
+S A++S GD LCRP + A LE++ RHPC+T DF+PNDI IG +D D ASCVL+TGPNMGGKSTL+RQA + ++A LG +VPA+ CRL+ DR+FTR GASDRI+AG+STFFVEL+ETS+IL+ AT+HSLV++DELGRGT+TFDG+AIASAV R LA+++
Sbjct: 1039 MSFANYSQDGDG----PLCRPVILLPADGSPPFLELKSARHPCITKTF----FGDDFIPNDIVIGSKDEDGGGGASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMAGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVRELAENI 1217 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118578.3836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig118578.3836.1 >prot_M-pyrifera_M_contig118578.3836.1 ID=prot_M-pyrifera_M_contig118578.3836.1|Name=mRNA_M-pyrifera_M_contig118578.3836.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=182bp LSLADWSSSGDTGIAEDLCRPQFVPEASVLEIEGGRHPCVTLALRDAGSSback to top mRNA from alignment at M-pyrifera_M_contig118578:2..547+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig118578.3836.1 ID=mRNA_M-pyrifera_M_contig118578.3836.1|Name=mRNA_M-pyrifera_M_contig118578.3836.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig118578:2..547+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig118578:2..547+ >mRNA_M-pyrifera_M_contig118578.3836.1 ID=mRNA_M-pyrifera_M_contig118578.3836.1|Name=mRNA_M-pyrifera_M_contig118578.3836.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1092bp|location=Sequence derived from alignment at M-pyrifera_M_contig118578:2..547+ (Macrocystis pyrifera P11B4 male)back to top |