prot_M-pyrifera_M_contig118578.3836.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig118578.3836.1
Unique Nameprot_M-pyrifera_M_contig118578.3836.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length182
Homology
BLAST of mRNA_M-pyrifera_M_contig118578.3836.1 vs. uniprot
Match: UPI001C3FC7AC (DNA mismatch repair protein Msh6 n=1 Tax=Callorhinchus milii TaxID=7868 RepID=UPI001C3FC7AC)

HSP 1 Score: 199 bits (506), Expect = 2.270e-60
Identity = 105/193 (54.40%), Postives = 140/193 (72.54%), Query Frame = 0
Query:    1 LSLADWSSSGDTGIAEDLCRPQF-VPE---ASVLEIEGGRHPCVTLALRDAGSSSDFVPNDIRIG--------GRDSDALASCVLLTGPNMGGKSTLLRQACVTTLLAHLGVFVPAKSCRLSLTDRIFTRAGASDRILAGQSTFFVELAETSTILKFATKHSLVILDELGRGTSTFDGSAIASAVTRHLADHV 181
            +SLA +S  GD      +CRP   +PE    S LE+ G RHPCV+          DF+PND+ +G        G D  A ASC+L+TGPNMGGKSTL+RQA +  ++A LG +VPA+SC+L+  DR+FTR GASDRI++G+STFFVEL+ETS+IL+ AT+HSLV+LDELGRGT+T+DG+AIASAV + LA+++
Sbjct:   14 ISLAHYSQGGDG----PMCRPVVCLPEEDACSFLELRGSRHPCVSKTF----FGDDFIPNDLVVGRGESEDAEGSDGAAQASCMLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAESCKLTPVDRVFTRLGASDRIMSGESTFFVELSETSSILQHATQHSLVLLDELGRGTATYDGTAIASAVVKELAENI 198          
BLAST of mRNA_M-pyrifera_M_contig118578.3836.1 vs. uniprot
Match: A0A7K8XS96_9PICI (MSH6 protein (Fragment) n=7 Tax=Piciformes TaxID=9219 RepID=A0A7K8XS96_9PICI)

HSP 1 Score: 205 bits (522), Expect = 5.920e-58
Identity = 110/187 (58.82%), Postives = 141/187 (75.40%), Query Frame = 0
Query:    1 LSLADWSSSGDTGIAEDLCRPQFV-PEASV---LEIEGGRHPCVTLALRDAGSSSDFVPNDIRIGGRDSDAL--ASCVLLTGPNMGGKSTLLRQACVTTLLAHLGVFVPAKSCRLSLTDRIFTRAGASDRILAGQSTFFVELAETSTILKFATKHSLVILDELGRGTSTFDGSAIASAVTRHLADHV 181
            +SLA++S  GD G+   LCRP  V P  S    LE++  RHPC+T          DF+PNDI IG RD D    ASCVL+TGPNMGGKSTL+RQA +  ++A LG +VPA++CRL+  DR+FTR GASDRI++G+STFFVEL+ETS+IL+ ATKHSLV++DELGRGT+TFDG+AIASAV + LA+ +
Sbjct:  984 MSLANYSQDGD-GL---LCRPVIVLPVDSAPPFLELKNSRHPCITKTF----FGDDFIPNDIVIGSRDEDGSSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEACRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATKHSLVLVDELGRGTATFDGTAIASAVVKELAEQI 1162          
BLAST of mRNA_M-pyrifera_M_contig118578.3836.1 vs. uniprot
Match: A0A1X2HZ46_9FUNG (Muts domain V-domain-containing protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2HZ46_9FUNG)

HSP 1 Score: 204 bits (520), Expect = 8.320e-58
Identity = 108/176 (61.36%), Postives = 128/176 (72.73%), Query Frame = 0
Query:    8 SSGDTGIAEDLCRPQFVP-EASVLEIEGGRHPCVTLALRDAGSSSDFVPNDIRIGGRDSDALASCVLLTGPNMGGKSTLLRQACVTTLLAHLGVFVPAKSCRLSLTDRIFTRAGASDRILAGQSTFFVELAETSTILKFATKHSLVILDELGRGTSTFDGSAIASAVTRHLADHVG 182
            S G T I E  CRP+F   E SVLE E  RHPCV      AG S+DF+PND+++G +D   +    +LTGPNMGGKSTLLRQ CV  ++A LG +VPAKSCR++  DRI+TR GA+D I+AGQSTF VELAETS IL  AT  S+VILDELGRGTSTFDG AIA +V  +LA HVG
Sbjct:  849 SEGSTKIGEPACRPEFTDQETSVLEFEELRHPCVV-----AGPSTDFIPNDVKLGDKDEPNIT---VLTGPNMGGKSTLLRQTCVAIIMAQLGGYVPAKSCRMTACDRIYTRIGANDNIMAGQSTFMVELAETSKILHEATPRSMVILDELGRGTSTFDGYAIAYSVLHYLATHVG 1016          
BLAST of mRNA_M-pyrifera_M_contig118578.3836.1 vs. uniprot
Match: A0A8H7UCI3_9FUNG (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UCI3_9FUNG)

HSP 1 Score: 192 bits (488), Expect = 9.350e-58
Identity = 101/166 (60.84%), Postives = 122/166 (73.49%), Query Frame = 0
Query:   18 LCRPQFVP-EASVLEIEGGRHPCVTLALRDAGSSSDFVPNDIRIGGRDSDALASCVLLTGPNMGGKSTLLRQACVTTLLAHLGVFVPAKSCRLSLTDRIFTRAGASDRILAGQSTFFVELAETSTILKFATKHSLVILDELGRGTSTFDGSAIASAVTRHLADHVG 182
            +CRP+FV  E SVLE+   RHPC+      AG ++DF+PND  +GG   +     ++LTGPNMGGKSTLLRQ CV  ++A LG +VPA  CR++  DRI+TR GA+D ILAGQSTF VEL+ETS IL  AT HS+VILDELGRGTSTFDG AIA AV  +LA HVG
Sbjct:    2 VCRPEFVDSEKSVLELHDLRHPCIA-----AGVATDFIPNDTYLGGERPNI----IVLTGPNMGGKSTLLRQTCVAIIMAQLGCYVPASKCRMTPFDRIYTRIGANDNILAGQSTFMVELSETSKILHEATPHSMVILDELGRGTSTFDGYAIAYAVLHYLATHVG 158          
BLAST of mRNA_M-pyrifera_M_contig118578.3836.1 vs. uniprot
Match: A0A8C5MKP8_9ANUR (DNA mismatch repair protein n=2 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5MKP8_9ANUR)

HSP 1 Score: 203 bits (517), Expect = 2.790e-57
Identity = 105/187 (56.15%), Postives = 138/187 (73.80%), Query Frame = 0
Query:    1 LSLADWSSSGDTGIAEDLCRPQFV---PEASVLEIEGGRHPCVTLALRDAGSSSDFVPNDIRIGGRDSDAL---ASCVLLTGPNMGGKSTLLRQACVTTLLAHLGVFVPAKSCRLSLTDRIFTRAGASDRILAGQSTFFVELAETSTILKFATKHSLVILDELGRGTSTFDGSAIASAVTRHLADHV 181
            + L+ +S  GD    + +CRP+FV     A  LE++G RHPC+T          DF+PNDI IG R  D     A CVL+TGPNMGGKSTLLRQA +  ++A LG +VPA++CRL+  DR+FTR GASDRI++G+STFFVEL+ETS+IL+ AT+HSLV+LDELGRGT+TFDG+AIASAV + L++ +
Sbjct:  984 MCLSQYSKGGD----DPVCRPEFVLPGDTAPFLELKGSRHPCITKTF----FGDDFIPNDILIGCRGEDCSNSEAHCVLVTGPNMGGKSTLLRQAGLLVVMAQLGCYVPAETCRLTPVDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLLDELGRGTATFDGTAIASAVVKELSESI 1162          
BLAST of mRNA_M-pyrifera_M_contig118578.3836.1 vs. uniprot
Match: A0A2D4KGH4_9SAUR (DNA_MISMATCH_REPAIR_2 domain-containing protein (Fragment) n=1 Tax=Micrurus paraensis TaxID=1970185 RepID=A0A2D4KGH4_9SAUR)

HSP 1 Score: 195 bits (495), Expect = 4.000e-57
Identity = 103/186 (55.38%), Postives = 140/186 (75.27%), Query Frame = 0
Query:    1 LSLADWSSSGDTGIAEDLCRPQFV-PE--ASVLEIEGGRHPCVTLALRDAGSSSDFVPNDIRIGGRD--SDALASCVLLTGPNMGGKSTLLRQACVTTLLAHLGVFVPAKSCRLSLTDRIFTRAGASDRILAGQSTFFVELAETSTILKFATKHSLVILDELGRGTSTFDGSAIASAVTRHLADHV 181
            L LA +S   D      LCRP+ + PE  +  LE++  RHPC+T          DF+PNDI IG  D  +++ A+CVL+TGPNMGGKSTL+RQA +  ++A LG +VPA+SCRL+  DR+FTR GASDRI++G+STFFVEL+ETS+IL+ AT+HSLV++DELGRGT+TFDG+AIASAV + L++++
Sbjct:  169 LCLACYSQGCDG----PLCRPEILLPENTSPFLELKSSRHPCITKTY----FGDDFIPNDIIIGLEDEKTNSRATCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAESCRLTPVDRVFTRLGASDRIMSGESTFFVELSETSSILQHATQHSLVLMDELGRGTATFDGTAIASAVVKELSENI 346          
BLAST of mRNA_M-pyrifera_M_contig118578.3836.1 vs. uniprot
Match: A0A852CPY8_9PICI (MSH6 protein (Fragment) n=1 Tax=Ramphastos sulfuratus TaxID=322582 RepID=A0A852CPY8_9PICI)

HSP 1 Score: 202 bits (515), Expect = 5.170e-57
Identity = 108/187 (57.75%), Postives = 138/187 (73.80%), Query Frame = 0
Query:    1 LSLADWSSSGDTGIAEDLCRPQFV-PEASV---LEIEGGRHPCVTLALRDAGSSSDFVPNDIRIGGRDSDAL--ASCVLLTGPNMGGKSTLLRQACVTTLLAHLGVFVPAKSCRLSLTDRIFTRAGASDRILAGQSTFFVELAETSTILKFATKHSLVILDELGRGTSTFDGSAIASAVTRHLADHV 181
            +SLA++S  GD      LCRP  V P  S    LE++  RHPC+T          DF+PNDI IG  D D    ASCVL+TGPNMGGKSTL+RQA +  ++A LG +VPA++CRL+  DR+FTR GASDRI++G+STFFVEL+ETS+IL+ ATKHSLV++DELGRGT+TFDG+AIASAV + LA+ +
Sbjct:  997 MSLANYSQDGDG----PLCRPVIVLPVDSAPPFLELKNSRHPCITKTF----FGDDFIPNDIVIGSADEDGSSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEACRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATKHSLVLVDELGRGTATFDGTAIASAVMKELAEQI 1175          
BLAST of mRNA_M-pyrifera_M_contig118578.3836.1 vs. uniprot
Match: A0A7L2Z5B2_JACJC (MSH6 protein (Fragment) n=6 Tax=Neognathae TaxID=8825 RepID=A0A7L2Z5B2_JACJC)

HSP 1 Score: 202 bits (514), Expect = 7.070e-57
Identity = 106/187 (56.68%), Postives = 141/187 (75.40%), Query Frame = 0
Query:    1 LSLADWSSSGDTGIAEDLCRPQFV-PEASV---LEIEGGRHPCVTLALRDAGSSSDFVPNDIRIGGRDSDAL--ASCVLLTGPNMGGKSTLLRQACVTTLLAHLGVFVPAKSCRLSLTDRIFTRAGASDRILAGQSTFFVELAETSTILKFATKHSLVILDELGRGTSTFDGSAIASAVTRHLADHV 181
            +SLA++S  GD      LCRP  + P  S    LE++  RHPC+T          DF+PNDI IG +D D+   ASCVL+TGPNMGGKSTL+RQA +  ++A LG +VPA++CRL+  DR+FTR GASDRI++G+STFFVEL+ETS+IL+ AT+HSLV++DELGRGT+TFDG+AIASAV + LA+++
Sbjct:  980 MSLANYSQDGDG----PLCRPVILLPVDSAPPFLELKNSRHPCITKTF----FGDDFIPNDIVIGSKDDDSQSDASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEACRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVKELAENI 1158          
BLAST of mRNA_M-pyrifera_M_contig118578.3836.1 vs. uniprot
Match: MSH6_CHICK (DNA mismatch repair protein Msh6 n=21 Tax=Neognathae TaxID=8825 RepID=MSH6_CHICK)

HSP 1 Score: 202 bits (513), Expect = 9.720e-57
Identity = 107/187 (57.22%), Postives = 140/187 (74.87%), Query Frame = 0
Query:    1 LSLADWSSSGDTGIAEDLCRPQFV-PEASV---LEIEGGRHPCVTLALRDAGSSSDFVPNDIRIGGRDSD--ALASCVLLTGPNMGGKSTLLRQACVTTLLAHLGVFVPAKSCRLSLTDRIFTRAGASDRILAGQSTFFVELAETSTILKFATKHSLVILDELGRGTSTFDGSAIASAVTRHLADHV 181
            +SLA++S  GD      LCRP  + P  S    LE++  RHPC+T          DF+PNDI IG +D D  + ASCVL+TGPNMGGKSTL+RQA +  ++A LG +VPA+ CRL+  DR+FTR GASDRI++G+STFFVEL+ETS+IL+ AT+HSLV++DELGRGT+TFDG+AIASAV R LA+++
Sbjct: 1038 MSLANYSQDGDG----PLCRPVILLPVDSAPPFLELKNARHPCITKTF----FGDDFIPNDIVIGSKDEDGGSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVRELAENI 1216          
BLAST of mRNA_M-pyrifera_M_contig118578.3836.1 vs. uniprot
Match: A0A8C2SNQ3_COTJA (DNA mismatch repair protein n=1 Tax=Coturnix japonica TaxID=93934 RepID=A0A8C2SNQ3_COTJA)

HSP 1 Score: 202 bits (513), Expect = 9.730e-57
Identity = 106/187 (56.68%), Postives = 137/187 (73.26%), Query Frame = 0
Query:    1 LSLADWSSSGDTGIAEDLCRPQFVPEAS----VLEIEGGRHPCVTLALRDAGSSSDFVPNDIRIGGRDSDAL--ASCVLLTGPNMGGKSTLLRQACVTTLLAHLGVFVPAKSCRLSLTDRIFTRAGASDRILAGQSTFFVELAETSTILKFATKHSLVILDELGRGTSTFDGSAIASAVTRHLADHV 181
            +S A++S  GD      LCRP  +  A      LE++  RHPC+T          DF+PNDI IG +D D    ASCVL+TGPNMGGKSTL+RQA +  ++A LG +VPA+ CRL+  DR+FTR GASDRI+AG+STFFVEL+ETS+IL+ AT+HSLV++DELGRGT+TFDG+AIASAV R LA+++
Sbjct: 1039 MSFANYSQDGDG----PLCRPVILLPADGSPPFLELKSARHPCITKTF----FGDDFIPNDIVIGSKDEDGGGGASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMAGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVRELAENI 1217          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118578.3836.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3FC7AC2.270e-6054.40DNA mismatch repair protein Msh6 n=1 Tax=Callorhin... [more]
A0A7K8XS96_9PICI5.920e-5858.82MSH6 protein (Fragment) n=7 Tax=Piciformes TaxID=9... [more]
A0A1X2HZ46_9FUNG8.320e-5861.36Muts domain V-domain-containing protein n=1 Tax=Ab... [more]
A0A8H7UCI3_9FUNG9.350e-5860.84DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A8C5MKP8_9ANUR2.790e-5756.15DNA mismatch repair protein n=2 Tax=Leptobrachium ... [more]
A0A2D4KGH4_9SAUR4.000e-5755.38DNA_MISMATCH_REPAIR_2 domain-containing protein (F... [more]
A0A852CPY8_9PICI5.170e-5757.75MSH6 protein (Fragment) n=1 Tax=Ramphastos sulfura... [more]
A0A7L2Z5B2_JACJC7.070e-5756.68MSH6 protein (Fragment) n=6 Tax=Neognathae TaxID=8... [more]
MSH6_CHICK9.720e-5757.22DNA mismatch repair protein Msh6 n=21 Tax=Neognath... [more]
A0A8C2SNQ3_COTJA9.730e-5756.68DNA mismatch repair protein n=1 Tax=Coturnix japon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000432DNA mismatch repair protein MutS, C-terminalSMARTSM00534mutATP5coord: 69..182
e-value: 5.9E-34
score: 128.8
IPR000432DNA mismatch repair protein MutS, C-terminalPFAMPF00488MutS_Vcoord: 73..180
e-value: 1.7E-48
score: 165.1
IPR000432DNA mismatch repair protein MutS, C-terminalPROSITEPS00486DNA_MISMATCH_REPAIR_2coord: 150..166
NoneNo IPR availableGENE3D3.40.50.300coord: 17..182
e-value: 3.3E-66
score: 225.2
NoneNo IPR availablePANTHERPTHR11361DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBERcoord: 2..181
NoneNo IPR availablePANTHERPTHR11361:SF34DNA MISMATCH REPAIR PROTEIN MSH6coord: 2..181
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 19..180

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118578contigM-pyrifera_M_contig118578:2..547 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118578.3836.1mRNA_M-pyrifera_M_contig118578.3836.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig118578 2..547 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig118578.3836.1 ID=prot_M-pyrifera_M_contig118578.3836.1|Name=mRNA_M-pyrifera_M_contig118578.3836.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=182bp
LSLADWSSSGDTGIAEDLCRPQFVPEASVLEIEGGRHPCVTLALRDAGSS
SDFVPNDIRIGGRDSDALASCVLLTGPNMGGKSTLLRQACVTTLLAHLGV
FVPAKSCRLSLTDRIFTRAGASDRILAGQSTFFVELAETSTILKFATKHS
LVILDELGRGTSTFDGSAIASAVTRHLADHVG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000432DNA_mismatch_repair_MutS_C
IPR027417P-loop_NTPase